Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0376 and Psest_0377 are separated by 108 nucleotides Psest_0377 and Psest_0378 are separated by 93 nucleotides
Psest_0376: Psest_0376 - glucarate dehydratase, at 403,607 to 404,947
_0376
Psest_0377: Psest_0377 - galactarate dehydratase, at 405,056 to 406,621
_0377
Psest_0378: Psest_0378 - Lactate dehydrogenase and related dehydrogenases, at 406,715 to 407,644
_0378
Position (kb) 405
406
407 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 404.195 kb on + strand, within Psest_0376 at 404.195 kb on + strand, within Psest_0376 at 404.894 kb on + strand at 404.895 kb on - strand at 404.895 kb on - strand at 404.895 kb on - strand at 405.412 kb on + strand, within Psest_0377 at 405.412 kb on + strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.413 kb on - strand, within Psest_0377 at 405.623 kb on + strand, within Psest_0377 at 405.623 kb on + strand, within Psest_0377 at 405.623 kb on + strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.624 kb on - strand, within Psest_0377 at 405.962 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.183 kb on + strand, within Psest_0377 at 406.523 kb on + strand at 406.523 kb on + strand at 406.523 kb on + strand at 406.523 kb on + strand at 406.524 kb on - strand at 406.524 kb on - strand at 406.524 kb on - strand at 406.526 kb on + strand at 406.527 kb on - strand at 406.527 kb on - strand at 406.527 kb on - strand at 406.688 kb on + strand at 406.688 kb on + strand at 406.722 kb on - strand at 406.722 kb on - strand at 407.154 kb on + strand, within Psest_0378 at 407.154 kb on + strand, within Psest_0378 at 407.155 kb on - strand, within Psest_0378 at 407.155 kb on - strand, within Psest_0378 at 407.219 kb on + strand, within Psest_0378 at 407.220 kb on - strand, within Psest_0378 at 407.522 kb on - strand, within Psest_0378
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 404,195 + Psest_0376 0.44 +0.8 404,195 + Psest_0376 0.44 -0.5 404,894 + -0.8 404,895 - -1.1 404,895 - +0.3 404,895 - +1.5 405,412 + Psest_0377 0.23 +1.6 405,412 + Psest_0377 0.23 +0.8 405,413 - Psest_0377 0.23 +0.3 405,413 - Psest_0377 0.23 -0.1 405,413 - Psest_0377 0.23 +1.7 405,413 - Psest_0377 0.23 -1.1 405,413 - Psest_0377 0.23 -0.0 405,413 - Psest_0377 0.23 +0.2 405,413 - Psest_0377 0.23 -0.8 405,623 + Psest_0377 0.36 -0.1 405,623 + Psest_0377 0.36 -1.1 405,623 + Psest_0377 0.36 -1.1 405,624 - Psest_0377 0.36 -0.7 405,624 - Psest_0377 0.36 -2.0 405,624 - Psest_0377 0.36 +1.4 405,624 - Psest_0377 0.36 +0.4 405,624 - Psest_0377 0.36 +0.1 405,624 - Psest_0377 0.36 +0.7 405,624 - Psest_0377 0.36 -0.2 405,962 + Psest_0377 0.58 +0.2 406,037 + Psest_0377 0.63 +2.2 406,037 + Psest_0377 0.63 +1.6 406,037 + Psest_0377 0.63 +2.2 406,037 + Psest_0377 0.63 +0.9 406,037 + Psest_0377 0.63 +0.9 406,037 + Psest_0377 0.63 +0.8 406,038 - Psest_0377 0.63 +0.0 406,038 - Psest_0377 0.63 -1.6 406,038 - Psest_0377 0.63 +0.4 406,038 - Psest_0377 0.63 -1.8 406,038 - Psest_0377 0.63 +0.8 406,038 - Psest_0377 0.63 +0.3 406,038 - Psest_0377 0.63 +0.0 406,038 - Psest_0377 0.63 -0.3 406,038 - Psest_0377 0.63 +0.1 406,038 - Psest_0377 0.63 -0.4 406,038 - Psest_0377 0.63 +2.8 406,183 + Psest_0377 0.72 +0.8 406,523 + +1.1 406,523 + +0.6 406,523 + -0.8 406,523 + +0.8 406,524 - +1.5 406,524 - +0.6 406,524 - +0.5 406,526 + +2.5 406,527 - +0.3 406,527 - +0.3 406,527 - +0.4 406,688 + +1.6 406,688 + +1.2 406,722 - +0.6 406,722 - +0.7 407,154 + Psest_0378 0.47 +1.2 407,154 + Psest_0378 0.47 +4.7 407,155 - Psest_0378 0.47 -0.1 407,155 - Psest_0378 0.47 +1.2 407,219 + Psest_0378 0.54 +2.2 407,220 - Psest_0378 0.54 +0.2 407,522 - Psest_0378 0.87 -0.8
Or see this region's nucleotide sequence