Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3793 and Psest_3794 are separated by 146 nucleotides Psest_3794 and Psest_3795 are separated by 103 nucleotides
Psest_3793: Psest_3793 - D-alanine dehydrogenase (EC 1.4.99.-) (from data) , at 3,961,602 to 3,962,900
_3793
Psest_3794: Psest_3794 - Transcriptional regulators, at 3,963,047 to 3,963,535
_3794
Psest_3795: Psest_3795 - Glycine/D-amino acid oxidases (deaminating), at 3,963,639 to 3,964,973
_3795
Position (kb)
3963
3964 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3962.134 kb on + strand, within Psest_3793 at 3962.135 kb on - strand, within Psest_3793 at 3962.156 kb on - strand, within Psest_3793 at 3962.156 kb on - strand, within Psest_3793 at 3962.513 kb on - strand, within Psest_3793 at 3962.560 kb on + strand, within Psest_3793 at 3962.560 kb on + strand, within Psest_3793 at 3962.644 kb on + strand, within Psest_3793 at 3962.750 kb on - strand, within Psest_3793 at 3962.848 kb on + strand at 3962.848 kb on + strand at 3962.848 kb on + strand at 3962.848 kb on + strand at 3962.848 kb on + strand at 3962.849 kb on - strand at 3962.849 kb on - strand at 3962.849 kb on - strand at 3962.849 kb on - strand at 3962.849 kb on - strand at 3962.852 kb on - strand at 3962.852 kb on - strand at 3962.893 kb on - strand at 3962.942 kb on - strand at 3962.957 kb on - strand at 3962.988 kb on - strand at 3963.106 kb on + strand, within Psest_3794 at 3963.106 kb on + strand, within Psest_3794 at 3963.106 kb on + strand, within Psest_3794 at 3963.387 kb on - strand, within Psest_3794 at 3963.387 kb on - strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.482 kb on + strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.483 kb on - strand, within Psest_3794 at 3963.627 kb on + strand at 3963.633 kb on - strand at 3963.711 kb on + strand at 3963.712 kb on - strand at 3963.712 kb on - strand at 3963.712 kb on - strand at 3963.812 kb on + strand, within Psest_3795 at 3963.812 kb on + strand, within Psest_3795 at 3963.813 kb on - strand, within Psest_3795 at 3963.813 kb on - strand, within Psest_3795 at 3964.111 kb on - strand, within Psest_3795 at 3964.340 kb on - strand, within Psest_3795 at 3964.402 kb on - strand, within Psest_3795 at 3964.455 kb on + strand, within Psest_3795 at 3964.455 kb on + strand, within Psest_3795 at 3964.455 kb on + strand, within Psest_3795 at 3964.455 kb on + strand, within Psest_3795 at 3964.455 kb on + strand, within Psest_3795 at 3964.456 kb on - strand, within Psest_3795 at 3964.456 kb on - strand, within Psest_3795 at 3964.456 kb on - strand, within Psest_3795 at 3964.456 kb on - strand, within Psest_3795 at 3964.456 kb on - strand, within Psest_3795 at 3964.456 kb on - strand, within Psest_3795 at 3964.456 kb on - strand, within Psest_3795 at 3964.456 kb on - strand, within Psest_3795 at 3964.456 kb on - strand, within Psest_3795 at 3964.456 kb on - strand, within Psest_3795 at 3964.457 kb on + strand, within Psest_3795 at 3964.457 kb on + strand, within Psest_3795 at 3964.458 kb on - strand, within Psest_3795 at 3964.458 kb on - strand, within Psest_3795
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 3,962,134 + Psest_3793 0.41 -1.0 3,962,135 - Psest_3793 0.41 -1.4 3,962,156 - Psest_3793 0.43 +0.4 3,962,156 - Psest_3793 0.43 +1.2 3,962,513 - Psest_3793 0.70 +0.4 3,962,560 + Psest_3793 0.74 -1.1 3,962,560 + Psest_3793 0.74 -0.4 3,962,644 + Psest_3793 0.80 +0.6 3,962,750 - Psest_3793 0.88 +2.5 3,962,848 + -0.4 3,962,848 + -0.2 3,962,848 + -1.5 3,962,848 + -3.0 3,962,848 + -0.2 3,962,849 - +0.7 3,962,849 - +0.8 3,962,849 - +0.6 3,962,849 - +1.2 3,962,849 - -0.2 3,962,852 - +0.9 3,962,852 - +0.8 3,962,893 - +0.5 3,962,942 - +0.1 3,962,957 - -0.4 3,962,988 - -0.6 3,963,106 + Psest_3794 0.12 +0.8 3,963,106 + Psest_3794 0.12 -1.0 3,963,106 + Psest_3794 0.12 +1.1 3,963,387 - Psest_3794 0.70 -2.0 3,963,387 - Psest_3794 0.70 +0.2 3,963,482 + Psest_3794 0.89 -0.0 3,963,482 + Psest_3794 0.89 +0.4 3,963,482 + Psest_3794 0.89 +1.5 3,963,482 + Psest_3794 0.89 -0.2 3,963,482 + Psest_3794 0.89 +0.4 3,963,482 + Psest_3794 0.89 -0.0 3,963,482 + Psest_3794 0.89 +0.0 3,963,482 + Psest_3794 0.89 -1.7 3,963,482 + Psest_3794 0.89 -0.6 3,963,482 + Psest_3794 0.89 +1.1 3,963,482 + Psest_3794 0.89 -1.7 3,963,482 + Psest_3794 0.89 +2.1 3,963,482 + Psest_3794 0.89 +0.7 3,963,482 + Psest_3794 0.89 -2.3 3,963,482 + Psest_3794 0.89 +2.2 3,963,482 + Psest_3794 0.89 -0.4 3,963,482 + Psest_3794 0.89 -0.6 3,963,482 + Psest_3794 0.89 -0.4 3,963,482 + Psest_3794 0.89 +0.0 3,963,482 + Psest_3794 0.89 +0.2 3,963,482 + Psest_3794 0.89 -0.3 3,963,482 + Psest_3794 0.89 +1.5 3,963,482 + Psest_3794 0.89 -1.0 3,963,482 + Psest_3794 0.89 -0.4 3,963,482 + Psest_3794 0.89 -0.9 3,963,482 + Psest_3794 0.89 -1.6 3,963,482 + Psest_3794 0.89 +0.0 3,963,483 - Psest_3794 0.89 -1.0 3,963,483 - Psest_3794 0.89 -1.6 3,963,483 - Psest_3794 0.89 +0.2 3,963,483 - Psest_3794 0.89 -0.2 3,963,483 - Psest_3794 0.89 -0.1 3,963,483 - Psest_3794 0.89 -0.2 3,963,483 - Psest_3794 0.89 +0.6 3,963,483 - Psest_3794 0.89 +0.1 3,963,483 - Psest_3794 0.89 -1.0 3,963,483 - Psest_3794 0.89 +0.4 3,963,483 - Psest_3794 0.89 -1.8 3,963,483 - Psest_3794 0.89 -0.4 3,963,483 - Psest_3794 0.89 +0.4 3,963,483 - Psest_3794 0.89 -0.1 3,963,483 - Psest_3794 0.89 +2.2 3,963,483 - Psest_3794 0.89 -0.3 3,963,483 - Psest_3794 0.89 +1.8 3,963,483 - Psest_3794 0.89 -0.4 3,963,483 - Psest_3794 0.89 +0.6 3,963,483 - Psest_3794 0.89 +0.5 3,963,483 - Psest_3794 0.89 +1.4 3,963,483 - Psest_3794 0.89 +0.2 3,963,627 + -0.9 3,963,633 - -0.6 3,963,711 + +0.3 3,963,712 - -2.0 3,963,712 - -2.4 3,963,712 - +1.2 3,963,812 + Psest_3795 0.13 -0.8 3,963,812 + Psest_3795 0.13 -0.1 3,963,813 - Psest_3795 0.13 +0.2 3,963,813 - Psest_3795 0.13 -1.6 3,964,111 - Psest_3795 0.35 -1.5 3,964,340 - Psest_3795 0.53 -1.0 3,964,402 - Psest_3795 0.57 -0.8 3,964,455 + Psest_3795 0.61 -3.0 3,964,455 + Psest_3795 0.61 -2.4 3,964,455 + Psest_3795 0.61 -2.3 3,964,455 + Psest_3795 0.61 -1.8 3,964,455 + Psest_3795 0.61 -2.6 3,964,456 - Psest_3795 0.61 -1.1 3,964,456 - Psest_3795 0.61 -1.4 3,964,456 - Psest_3795 0.61 -2.1 3,964,456 - Psest_3795 0.61 -1.1 3,964,456 - Psest_3795 0.61 -0.5 3,964,456 - Psest_3795 0.61 -2.9 3,964,456 - Psest_3795 0.61 -0.7 3,964,456 - Psest_3795 0.61 -2.2 3,964,456 - Psest_3795 0.61 -1.6 3,964,456 - Psest_3795 0.61 -1.4 3,964,457 + Psest_3795 0.61 -2.6 3,964,457 + Psest_3795 0.61 -2.7 3,964,458 - Psest_3795 0.61 -0.1 3,964,458 - Psest_3795 0.61 +0.6
Or see this region's nucleotide sequence