Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0371

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0370 and Psest_0371 are separated by 10 nucleotidesPsest_0371 and Psest_0372 are separated by 67 nucleotides Psest_0370: Psest_0370 - Uncharacterized protein conserved in bacteria, at 396,146 to 397,666 _0370 Psest_0371: Psest_0371 - hypothetical protein, at 397,677 to 398,171 _0371 Psest_0372: Psest_0372 - Uncharacterized protein conserved in bacteria, at 398,239 to 399,219 _0372 Position (kb) 397 398 399Strain fitness (log2 ratio) -2 -1 0 1 2at 396.780 kb on + strand, within Psest_0370at 396.781 kb on - strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.819 kb on + strand, within Psest_0370at 396.820 kb on - strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.233 kb on + strand, within Psest_0370at 397.234 kb on - strand, within Psest_0370at 397.234 kb on - strand, within Psest_0370at 397.234 kb on - strand, within Psest_0370at 397.460 kb on - strand, within Psest_0370at 397.655 kb on + strandat 397.655 kb on + strandat 397.655 kb on + strandat 397.655 kb on + strandat 397.656 kb on - strandat 397.656 kb on - strandat 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.738 kb on + strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.739 kb on - strand, within Psest_0371at 397.828 kb on + strand, within Psest_0371at 397.828 kb on + strand, within Psest_0371at 397.829 kb on - strand, within Psest_0371at 397.829 kb on - strand, within Psest_0371at 397.834 kb on + strand, within Psest_0371at 397.834 kb on + strand, within Psest_0371at 397.834 kb on + strand, within Psest_0371at 397.835 kb on - strand, within Psest_0371at 397.835 kb on - strand, within Psest_0371at 397.835 kb on - strand, within Psest_0371at 397.882 kb on + strand, within Psest_0371at 397.882 kb on + strand, within Psest_0371at 397.882 kb on + strand, within Psest_0371at 397.883 kb on - strand, within Psest_0371at 397.883 kb on - strand, within Psest_0371at 397.883 kb on - strand, within Psest_0371at 397.968 kb on + strand, within Psest_0371at 398.085 kb on + strand, within Psest_0371at 398.086 kb on - strand, within Psest_0371at 398.107 kb on + strand, within Psest_0371at 398.107 kb on + strand, within Psest_0371at 398.107 kb on + strand, within Psest_0371at 398.108 kb on - strand, within Psest_0371at 398.108 kb on - strand, within Psest_0371at 398.134 kb on - strandat 398.134 kb on - strandat 398.240 kb on + strandat 398.240 kb on + strandat 398.241 kb on - strandat 398.241 kb on - strandat 398.241 kb on - strandat 398.327 kb on + strandat 398.328 kb on - strandat 398.330 kb on + strandat 398.369 kb on + strand, within Psest_0372at 398.456 kb on + strand, within Psest_0372at 398.456 kb on + strand, within Psest_0372at 398.457 kb on - strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.573 kb on + strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.574 kb on - strand, within Psest_0372at 398.591 kb on + strand, within Psest_0372at 398.591 kb on + strand, within Psest_0372at 398.591 kb on + strand, within Psest_0372at 398.592 kb on - strand, within Psest_0372at 398.592 kb on - strand, within Psest_0372at 398.741 kb on + strand, within Psest_0372at 398.741 kb on + strand, within Psest_0372at 398.873 kb on + strand, within Psest_0372at 398.873 kb on + strand, within Psest_0372at 399.004 kb on - strand, within Psest_0372at 399.044 kb on + strand, within Psest_0372at 399.044 kb on + strand, within Psest_0372at 399.044 kb on + strand, within Psest_0372at 399.045 kb on - strand, within Psest_0372at 399.045 kb on - strand, within Psest_0372at 399.045 kb on - strand, within Psest_0372

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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396,780 + Psest_0370 0.42 +0.6
396,781 - Psest_0370 0.42 -0.8
396,819 + Psest_0370 0.44 +0.3
396,819 + Psest_0370 0.44 +0.7
396,819 + Psest_0370 0.44 +0.3
396,819 + Psest_0370 0.44 +0.7
396,819 + Psest_0370 0.44 +1.4
396,819 + Psest_0370 0.44 +2.0
396,819 + Psest_0370 0.44 +1.1
396,819 + Psest_0370 0.44 -0.1
396,819 + Psest_0370 0.44 +0.4
396,820 - Psest_0370 0.44 +0.1
397,233 + Psest_0370 0.71 +0.3
397,233 + Psest_0370 0.71 +0.8
397,233 + Psest_0370 0.71 -0.2
397,233 + Psest_0370 0.71 -0.8
397,233 + Psest_0370 0.71 -0.4
397,233 + Psest_0370 0.71 +0.2
397,234 - Psest_0370 0.72 +1.4
397,234 - Psest_0370 0.72 +0.3
397,234 - Psest_0370 0.72 +0.6
397,460 - Psest_0370 0.86 +0.4
397,655 + +0.2
397,655 + -1.2
397,655 + -0.2
397,655 + -1.6
397,656 - +0.2
397,656 - -2.0
397,738 + Psest_0371 0.12 -0.1
397,738 + Psest_0371 0.12 -1.0
397,738 + Psest_0371 0.12 -0.8
397,738 + Psest_0371 0.12 -0.8
397,738 + Psest_0371 0.12 +0.9
397,738 + Psest_0371 0.12 -0.9
397,739 - Psest_0371 0.13 +0.9
397,739 - Psest_0371 0.13 +0.9
397,739 - Psest_0371 0.13 -1.6
397,739 - Psest_0371 0.13 +0.1
397,739 - Psest_0371 0.13 -0.6
397,739 - Psest_0371 0.13 -0.9
397,739 - Psest_0371 0.13 -0.1
397,739 - Psest_0371 0.13 -0.7
397,739 - Psest_0371 0.13 -0.4
397,739 - Psest_0371 0.13 -0.5
397,739 - Psest_0371 0.13 -0.1
397,739 - Psest_0371 0.13 -1.0
397,739 - Psest_0371 0.13 +0.2
397,828 + Psest_0371 0.31 +0.4
397,828 + Psest_0371 0.31 +0.9
397,829 - Psest_0371 0.31 -0.9
397,829 - Psest_0371 0.31 -2.5
397,834 + Psest_0371 0.32 +0.2
397,834 + Psest_0371 0.32 -0.5
397,834 + Psest_0371 0.32 -1.6
397,835 - Psest_0371 0.32 +1.5
397,835 - Psest_0371 0.32 +0.6
397,835 - Psest_0371 0.32 -1.2
397,882 + Psest_0371 0.41 +0.1
397,882 + Psest_0371 0.41 -1.2
397,882 + Psest_0371 0.41 -0.6
397,883 - Psest_0371 0.42 -2.2
397,883 - Psest_0371 0.42 -0.4
397,883 - Psest_0371 0.42 -0.2
397,968 + Psest_0371 0.59 +0.1
398,085 + Psest_0371 0.82 -0.2
398,086 - Psest_0371 0.83 -0.5
398,107 + Psest_0371 0.87 +1.1
398,107 + Psest_0371 0.87 +0.5
398,107 + Psest_0371 0.87 -0.8
398,108 - Psest_0371 0.87 +2.2
398,108 - Psest_0371 0.87 -0.3
398,134 - -0.5
398,134 - +1.6
398,240 + +0.2
398,240 + -0.4
398,241 - +0.2
398,241 - +0.9
398,241 - -2.0
398,327 + +0.2
398,328 - +1.2
398,330 + +0.2
398,369 + Psest_0372 0.13 -0.4
398,456 + Psest_0372 0.22 +2.0
398,456 + Psest_0372 0.22 +1.4
398,457 - Psest_0372 0.22 +0.4
398,573 + Psest_0372 0.34 +1.1
398,573 + Psest_0372 0.34 +1.8
398,573 + Psest_0372 0.34 +0.1
398,573 + Psest_0372 0.34 +1.9
398,573 + Psest_0372 0.34 -0.3
398,573 + Psest_0372 0.34 -0.2
398,574 - Psest_0372 0.34 +0.3
398,574 - Psest_0372 0.34 +0.4
398,574 - Psest_0372 0.34 +0.7
398,574 - Psest_0372 0.34 +1.4
398,574 - Psest_0372 0.34 -1.4
398,591 + Psest_0372 0.36 -0.0
398,591 + Psest_0372 0.36 -0.7
398,591 + Psest_0372 0.36 +0.6
398,592 - Psest_0372 0.36 +1.2
398,592 - Psest_0372 0.36 +0.3
398,741 + Psest_0372 0.51 +1.2
398,741 + Psest_0372 0.51 +0.4
398,873 + Psest_0372 0.65 +1.4
398,873 + Psest_0372 0.65 +1.0
399,004 - Psest_0372 0.78 +0.3
399,044 + Psest_0372 0.82 -1.2
399,044 + Psest_0372 0.82 +0.6
399,044 + Psest_0372 0.82 -0.2
399,045 - Psest_0372 0.82 -0.0
399,045 - Psest_0372 0.82 -0.1
399,045 - Psest_0372 0.82 +0.6

Or see this region's nucleotide sequence