Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00230

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00220 and PGA1_262p00230 overlap by 4 nucleotidesPGA1_262p00230 and PGA1_262p00240 are separated by 126 nucleotidesPGA1_262p00240 and PGA1_262p00250 are separated by 41 nucleotidesPGA1_262p00250 and PGA1_262p00260 are separated by 109 nucleotides PGA1_262p00220: PGA1_262p00220 - putative mandelate racemase/muconate lactonizing enzyme, at 26,417 to 27,592 _262p00220 PGA1_262p00230: PGA1_262p00230 - betaine aldehyde dehydrogenase BetB, at 27,589 to 29,073 _262p00230 PGA1_262p00240: PGA1_262p00240 - Protein of unknown function (DUF1289)., at 29,200 to 29,445 _262p00240 PGA1_262p00250: PGA1_262p00250 - ferritin-like protein, at 29,487 to 29,960 _262p00250 PGA1_262p00260: PGA1_262p00260 - hypothetical protein, at 30,070 to 30,510 _262p00260 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 26.594 kb on + strand, within PGA1_262p00220at 26.629 kb on + strand, within PGA1_262p00220at 26.655 kb on - strand, within PGA1_262p00220at 26.826 kb on - strand, within PGA1_262p00220at 26.928 kb on - strand, within PGA1_262p00220at 27.002 kb on + strand, within PGA1_262p00220at 27.002 kb on + strand, within PGA1_262p00220at 27.010 kb on - strand, within PGA1_262p00220at 27.010 kb on - strand, within PGA1_262p00220at 27.010 kb on - strand, within PGA1_262p00220at 27.010 kb on - strand, within PGA1_262p00220at 27.123 kb on - strand, within PGA1_262p00220at 27.144 kb on + strand, within PGA1_262p00220at 27.159 kb on - strand, within PGA1_262p00220at 27.193 kb on + strand, within PGA1_262p00220at 27.251 kb on - strand, within PGA1_262p00220at 27.333 kb on - strand, within PGA1_262p00220at 27.390 kb on + strand, within PGA1_262p00220at 27.390 kb on + strand, within PGA1_262p00220at 27.390 kb on + strand, within PGA1_262p00220at 27.390 kb on + strand, within PGA1_262p00220at 27.398 kb on - strand, within PGA1_262p00220at 27.400 kb on + strand, within PGA1_262p00220at 27.419 kb on - strand, within PGA1_262p00220at 27.419 kb on - strand, within PGA1_262p00220at 27.447 kb on - strand, within PGA1_262p00220at 27.447 kb on - strand, within PGA1_262p00220at 27.523 kb on - strandat 27.530 kb on - strandat 27.563 kb on + strandat 27.576 kb on - strandat 27.676 kb on + strandat 27.730 kb on + strandat 28.180 kb on + strand, within PGA1_262p00230at 28.312 kb on + strand, within PGA1_262p00230at 28.334 kb on + strand, within PGA1_262p00230at 28.336 kb on - strand, within PGA1_262p00230at 28.352 kb on + strand, within PGA1_262p00230at 28.366 kb on + strand, within PGA1_262p00230at 28.373 kb on + strand, within PGA1_262p00230at 28.438 kb on - strand, within PGA1_262p00230at 28.639 kb on + strand, within PGA1_262p00230at 28.698 kb on - strand, within PGA1_262p00230at 28.743 kb on + strand, within PGA1_262p00230at 28.818 kb on + strand, within PGA1_262p00230at 28.913 kb on - strand, within PGA1_262p00230at 28.913 kb on - strand, within PGA1_262p00230at 28.942 kb on + strandat 28.943 kb on - strandat 28.964 kb on + strandat 29.088 kb on - strandat 29.153 kb on - strandat 29.174 kb on - strandat 29.230 kb on - strand, within PGA1_262p00240at 29.230 kb on - strand, within PGA1_262p00240at 29.230 kb on - strand, within PGA1_262p00240at 29.250 kb on + strand, within PGA1_262p00240at 29.348 kb on + strand, within PGA1_262p00240at 29.380 kb on + strand, within PGA1_262p00240at 29.484 kb on + strandat 29.484 kb on + strandat 29.484 kb on + strandat 29.492 kb on - strandat 29.492 kb on - strandat 29.632 kb on + strand, within PGA1_262p00250at 29.733 kb on + strand, within PGA1_262p00250at 29.897 kb on + strand, within PGA1_262p00250at 29.901 kb on - strand, within PGA1_262p00250at 29.906 kb on - strand, within PGA1_262p00250at 29.954 kb on + strandat 30.013 kb on + strandat 30.022 kb on - strandat 30.032 kb on - strandat 30.047 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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26,594 + PGA1_262p00220 0.15 -2.3
26,629 + PGA1_262p00220 0.18 -2.6
26,655 - PGA1_262p00220 0.20 +0.1
26,826 - PGA1_262p00220 0.35 -1.0
26,928 - PGA1_262p00220 0.43 +1.0
27,002 + PGA1_262p00220 0.50 -1.3
27,002 + PGA1_262p00220 0.50 +1.1
27,010 - PGA1_262p00220 0.50 -1.3
27,010 - PGA1_262p00220 0.50 +0.0
27,010 - PGA1_262p00220 0.50 +1.0
27,010 - PGA1_262p00220 0.50 +1.0
27,123 - PGA1_262p00220 0.60 -2.1
27,144 + PGA1_262p00220 0.62 -0.2
27,159 - PGA1_262p00220 0.63 +1.2
27,193 + PGA1_262p00220 0.66 -2.9
27,251 - PGA1_262p00220 0.71 +2.3
27,333 - PGA1_262p00220 0.78 -0.8
27,390 + PGA1_262p00220 0.83 +0.3
27,390 + PGA1_262p00220 0.83 +0.6
27,390 + PGA1_262p00220 0.83 +0.6
27,390 + PGA1_262p00220 0.83 -0.7
27,398 - PGA1_262p00220 0.83 +0.0
27,400 + PGA1_262p00220 0.84 +1.4
27,419 - PGA1_262p00220 0.85 +0.7
27,419 - PGA1_262p00220 0.85 -3.2
27,447 - PGA1_262p00220 0.88 -0.2
27,447 - PGA1_262p00220 0.88 -2.1
27,523 - -0.0
27,530 - -0.1
27,563 + +1.1
27,576 - +1.4
27,676 + -0.2
27,730 + +0.8
28,180 + PGA1_262p00230 0.40 -1.0
28,312 + PGA1_262p00230 0.49 -0.3
28,334 + PGA1_262p00230 0.50 +1.0
28,336 - PGA1_262p00230 0.50 -0.9
28,352 + PGA1_262p00230 0.51 -0.3
28,366 + PGA1_262p00230 0.52 -1.2
28,373 + PGA1_262p00230 0.53 +0.7
28,438 - PGA1_262p00230 0.57 +0.0
28,639 + PGA1_262p00230 0.71 -0.3
28,698 - PGA1_262p00230 0.75 +1.0
28,743 + PGA1_262p00230 0.78 +0.4
28,818 + PGA1_262p00230 0.83 -1.3
28,913 - PGA1_262p00230 0.89 +1.4
28,913 - PGA1_262p00230 0.89 -2.2
28,942 + -0.6
28,943 - +2.2
28,964 + +0.2
29,088 - -0.6
29,153 - -2.2
29,174 - +0.9
29,230 - PGA1_262p00240 0.12 -3.0
29,230 - PGA1_262p00240 0.12 -1.1
29,230 - PGA1_262p00240 0.12 +0.1
29,250 + PGA1_262p00240 0.20 -2.6
29,348 + PGA1_262p00240 0.60 -1.7
29,380 + PGA1_262p00240 0.73 -1.7
29,484 + +1.1
29,484 + -0.9
29,484 + +0.4
29,492 - +1.0
29,492 - +0.5
29,632 + PGA1_262p00250 0.31 +1.0
29,733 + PGA1_262p00250 0.52 -0.2
29,897 + PGA1_262p00250 0.86 -0.0
29,901 - PGA1_262p00250 0.87 -1.7
29,906 - PGA1_262p00250 0.88 +0.4
29,954 + +0.3
30,013 + +1.0
30,022 - -2.0
30,032 - +2.4
30,047 + +1.4

Or see this region's nucleotide sequence