Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3472

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3470 and Psest_3471 are separated by 150 nucleotidesPsest_3471 and Psest_3472 overlap by 17 nucleotidesPsest_3472 and Psest_3473 are separated by 15 nucleotidesPsest_3473 and Psest_3474 overlap by 14 nucleotides Psest_3470: Psest_3470 - Uncharacterized conserved protein, at 3,640,548 to 3,640,943 _3470 Psest_3471: Psest_3471 - Thermostable hemolysin., at 3,641,094 to 3,641,783 _3471 Psest_3472: Psest_3472 - Long-chain acyl-CoA synthetases (AMP-forming), at 3,641,767 to 3,643,212 _3472 Psest_3473: Psest_3473 - hypothetical protein, at 3,643,228 to 3,643,899 _3473 Psest_3474: Psest_3474 - Short-chain dehydrogenases of various substrate specificities, at 3,643,886 to 3,644,719 _3474 Position (kb) 3641 3642 3643 3644Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3640.772 kb on + strand, within Psest_3470at 3640.786 kb on + strand, within Psest_3470at 3640.786 kb on + strand, within Psest_3470at 3640.888 kb on + strand, within Psest_3470at 3640.888 kb on + strand, within Psest_3470at 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.972 kb on + strandat 3640.973 kb on - strandat 3640.973 kb on - strandat 3640.973 kb on - strandat 3640.973 kb on - strandat 3640.973 kb on - strandat 3640.973 kb on - strandat 3640.973 kb on - strandat 3640.973 kb on - strandat 3640.973 kb on - strandat 3640.973 kb on - strandat 3640.973 kb on - strandat 3640.973 kb on - strandat 3640.973 kb on - strandat 3641.034 kb on + strandat 3641.034 kb on + strandat 3641.034 kb on + strandat 3641.034 kb on + strandat 3641.035 kb on - strandat 3641.035 kb on - strandat 3641.035 kb on - strandat 3641.035 kb on - strandat 3641.035 kb on - strandat 3641.035 kb on - strandat 3641.045 kb on + strandat 3641.045 kb on + strandat 3641.045 kb on + strandat 3641.046 kb on - strandat 3641.046 kb on - strandat 3641.046 kb on - strandat 3641.125 kb on + strandat 3641.125 kb on + strandat 3641.125 kb on + strandat 3641.125 kb on + strandat 3641.126 kb on - strandat 3641.126 kb on - strandat 3641.643 kb on + strand, within Psest_3471at 3641.643 kb on + strand, within Psest_3471at 3641.644 kb on - strand, within Psest_3471at 3641.644 kb on - strand, within Psest_3471at 3641.644 kb on - strand, within Psest_3471at 3641.644 kb on - strand, within Psest_3471at 3641.644 kb on - strand, within Psest_3471at 3641.644 kb on - strand, within Psest_3471at 3641.646 kb on + strand, within Psest_3471at 3641.646 kb on + strand, within Psest_3471at 3641.646 kb on + strand, within Psest_3471at 3641.647 kb on - strand, within Psest_3471at 3641.719 kb on - strandat 3641.851 kb on + strandat 3641.903 kb on + strandat 3641.903 kb on + strandat 3641.904 kb on - strandat 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.181 kb on + strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.182 kb on - strand, within Psest_3472at 3642.183 kb on + strand, within Psest_3472at 3642.183 kb on + strand, within Psest_3472at 3642.183 kb on + strand, within Psest_3472at 3642.183 kb on + strand, within Psest_3472at 3642.184 kb on - strand, within Psest_3472at 3642.184 kb on - strand, within Psest_3472at 3642.184 kb on - strand, within Psest_3472at 3642.184 kb on - strand, within Psest_3472at 3642.184 kb on - strand, within Psest_3472at 3642.184 kb on - strand, within Psest_3472at 3642.184 kb on - strand, within Psest_3472at 3642.628 kb on + strand, within Psest_3472at 3643.276 kb on + strandat 3643.276 kb on + strandat 3643.277 kb on - strandat 3643.336 kb on + strand, within Psest_3473at 3643.336 kb on + strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.337 kb on - strand, within Psest_3473at 3643.360 kb on + strand, within Psest_3473at 3643.361 kb on - strand, within Psest_3473at 3643.453 kb on + strand, within Psest_3473at 3643.454 kb on - strand, within Psest_3473at 3643.574 kb on - strand, within Psest_3473at 3643.574 kb on - strand, within Psest_3473at 3643.574 kb on - strand, within Psest_3473at 3643.579 kb on + strand, within Psest_3473at 3643.579 kb on + strand, within Psest_3473at 3643.835 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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3,640,772 + Psest_3470 0.57 +1.0
3,640,786 + Psest_3470 0.60 +0.5
3,640,786 + Psest_3470 0.60 +0.4
3,640,888 + Psest_3470 0.86 +0.7
3,640,888 + Psest_3470 0.86 -1.5
3,640,972 + -0.0
3,640,972 + +0.3
3,640,972 + -2.9
3,640,972 + -0.7
3,640,972 + -1.1
3,640,972 + -0.0
3,640,972 + +0.7
3,640,972 + -0.9
3,640,972 + -1.3
3,640,972 + +0.3
3,640,972 + -0.8
3,640,972 + -0.5
3,640,972 + +0.1
3,640,972 + -0.5
3,640,972 + -1.3
3,640,972 + +0.3
3,640,973 - -0.0
3,640,973 - +0.8
3,640,973 - -1.0
3,640,973 - +1.0
3,640,973 - +0.3
3,640,973 - +0.1
3,640,973 - -0.8
3,640,973 - +0.8
3,640,973 - +0.6
3,640,973 - +0.3
3,640,973 - +1.7
3,640,973 - -0.4
3,640,973 - +2.5
3,641,034 + +1.3
3,641,034 + -2.0
3,641,034 + +0.3
3,641,034 + -0.3
3,641,035 - -0.0
3,641,035 - -0.9
3,641,035 - +1.3
3,641,035 - +0.0
3,641,035 - +0.3
3,641,035 - -0.3
3,641,045 + +0.4
3,641,045 + +0.5
3,641,045 + +1.0
3,641,046 - +0.7
3,641,046 - -0.3
3,641,046 - +0.5
3,641,125 + +0.3
3,641,125 + -0.4
3,641,125 + -0.4
3,641,125 + +2.1
3,641,126 - +0.5
3,641,126 - -0.2
3,641,643 + Psest_3471 0.80 +2.3
3,641,643 + Psest_3471 0.80 +0.1
3,641,644 - Psest_3471 0.80 +0.3
3,641,644 - Psest_3471 0.80 +0.6
3,641,644 - Psest_3471 0.80 +0.3
3,641,644 - Psest_3471 0.80 -3.4
3,641,644 - Psest_3471 0.80 +0.6
3,641,644 - Psest_3471 0.80 +0.1
3,641,646 + Psest_3471 0.80 +1.3
3,641,646 + Psest_3471 0.80 +0.3
3,641,646 + Psest_3471 0.80 +0.3
3,641,647 - Psest_3471 0.80 -0.3
3,641,719 - +0.7
3,641,851 + -0.6
3,641,903 + -0.1
3,641,903 + +1.2
3,641,904 - +1.8
3,642,181 + Psest_3472 0.29 +3.3
3,642,181 + Psest_3472 0.29 +0.2
3,642,181 + Psest_3472 0.29 -0.3
3,642,181 + Psest_3472 0.29 +0.5
3,642,181 + Psest_3472 0.29 -0.1
3,642,181 + Psest_3472 0.29 +0.3
3,642,181 + Psest_3472 0.29 -1.3
3,642,181 + Psest_3472 0.29 +1.3
3,642,181 + Psest_3472 0.29 +0.5
3,642,181 + Psest_3472 0.29 +0.3
3,642,181 + Psest_3472 0.29 +0.7
3,642,181 + Psest_3472 0.29 +1.6
3,642,181 + Psest_3472 0.29 -1.3
3,642,181 + Psest_3472 0.29 +0.5
3,642,181 + Psest_3472 0.29 +1.3
3,642,181 + Psest_3472 0.29 +0.3
3,642,182 - Psest_3472 0.29 +0.8
3,642,182 - Psest_3472 0.29 +1.3
3,642,182 - Psest_3472 0.29 -0.6
3,642,182 - Psest_3472 0.29 +1.9
3,642,182 - Psest_3472 0.29 +1.3
3,642,182 - Psest_3472 0.29 +0.0
3,642,182 - Psest_3472 0.29 +0.4
3,642,182 - Psest_3472 0.29 -1.7
3,642,182 - Psest_3472 0.29 +0.4
3,642,182 - Psest_3472 0.29 +0.6
3,642,182 - Psest_3472 0.29 +1.5
3,642,182 - Psest_3472 0.29 +1.1
3,642,182 - Psest_3472 0.29 -1.4
3,642,183 + Psest_3472 0.29 +2.0
3,642,183 + Psest_3472 0.29 -0.1
3,642,183 + Psest_3472 0.29 +2.6
3,642,183 + Psest_3472 0.29 +0.8
3,642,184 - Psest_3472 0.29 +0.0
3,642,184 - Psest_3472 0.29 -0.7
3,642,184 - Psest_3472 0.29 +0.1
3,642,184 - Psest_3472 0.29 +0.7
3,642,184 - Psest_3472 0.29 -0.3
3,642,184 - Psest_3472 0.29 +0.3
3,642,184 - Psest_3472 0.29 +0.9
3,642,628 + Psest_3472 0.60 +1.7
3,643,276 + +0.3
3,643,276 + -0.8
3,643,277 - +0.0
3,643,336 + Psest_3473 0.16 -0.8
3,643,336 + Psest_3473 0.16 +0.3
3,643,337 - Psest_3473 0.16 +0.3
3,643,337 - Psest_3473 0.16 -0.3
3,643,337 - Psest_3473 0.16 -0.5
3,643,337 - Psest_3473 0.16 +0.3
3,643,337 - Psest_3473 0.16 -0.5
3,643,337 - Psest_3473 0.16 +1.9
3,643,337 - Psest_3473 0.16 -0.5
3,643,360 + Psest_3473 0.20 -0.7
3,643,361 - Psest_3473 0.20 -0.3
3,643,453 + Psest_3473 0.33 +0.3
3,643,454 - Psest_3473 0.34 +1.3
3,643,574 - Psest_3473 0.51 +1.3
3,643,574 - Psest_3473 0.51 +1.1
3,643,574 - Psest_3473 0.51 +0.3
3,643,579 + Psest_3473 0.52 -0.9
3,643,579 + Psest_3473 0.52 +0.3
3,643,835 - +0.3

Or see this region's nucleotide sequence