Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03350 and PGA1_c03360 are separated by 269 nucleotides PGA1_c03360 and PGA1_c03365 are separated by 156 nucleotides PGA1_c03365 and PGA1_c03370 are separated by 163 nucleotides PGA1_c03370 and PGA1_c03380 are separated by 109 nucleotides
PGA1_c03350: PGA1_c03350 - octaprenyl-diphosphate synthase IspB, at 321,425 to 322,423
_c03350
PGA1_c03360: PGA1_c03360 - Predicted O-methyltransferase, at 322,693 to 323,460
_c03360
PGA1_c03365: PGA1_c03365 - Uncharacterized small protein, at 323,617 to 323,796
_c03365
PGA1_c03370: PGA1_c03370 - hypothetical protein, at 323,960 to 324,166
_c03370
PGA1_c03380: PGA1_c03380 - putative glycine cleavage system transcriptional activator, at 324,276 to 325,157
_c03380
Position (kb) 322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 322.448 kb on - strand at 322.620 kb on + strand at 322.627 kb on + strand at 322.628 kb on - strand at 322.643 kb on - strand at 322.649 kb on + strand at 322.700 kb on + strand at 323.059 kb on + strand, within PGA1_c03360 at 323.059 kb on + strand, within PGA1_c03360 at 323.082 kb on - strand, within PGA1_c03360 at 323.092 kb on - strand, within PGA1_c03360 at 323.092 kb on - strand, within PGA1_c03360 at 323.092 kb on - strand, within PGA1_c03360 at 323.242 kb on - strand, within PGA1_c03360 at 323.440 kb on + strand at 323.445 kb on + strand at 323.445 kb on + strand at 323.445 kb on + strand at 323.445 kb on + strand at 323.504 kb on - strand at 323.635 kb on - strand, within PGA1_c03365 at 323.685 kb on + strand, within PGA1_c03365 at 323.702 kb on + strand, within PGA1_c03365 at 323.777 kb on - strand, within PGA1_c03365 at 323.777 kb on - strand, within PGA1_c03365 at 323.777 kb on - strand, within PGA1_c03365 at 323.813 kb on + strand at 323.847 kb on - strand at 323.847 kb on - strand at 323.868 kb on + strand at 323.915 kb on - strand at 323.923 kb on + strand at 324.017 kb on + strand, within PGA1_c03370 at 324.017 kb on + strand, within PGA1_c03370 at 324.024 kb on + strand, within PGA1_c03370 at 324.087 kb on - strand, within PGA1_c03370 at 324.120 kb on + strand, within PGA1_c03370 at 324.128 kb on + strand, within PGA1_c03370 at 324.128 kb on + strand, within PGA1_c03370 at 324.199 kb on - strand at 324.222 kb on + strand at 324.227 kb on + strand at 324.232 kb on + strand at 324.235 kb on - strand at 324.235 kb on - strand at 324.235 kb on - strand at 324.235 kb on - strand at 324.240 kb on - strand at 324.277 kb on + strand at 324.278 kb on + strand at 324.278 kb on + strand at 324.278 kb on + strand at 324.286 kb on - strand at 324.286 kb on - strand at 324.286 kb on - strand at 324.339 kb on - strand at 324.370 kb on + strand, within PGA1_c03380 at 324.420 kb on - strand, within PGA1_c03380 at 324.434 kb on - strand, within PGA1_c03380
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 322,448 - -0.7 322,620 + -1.1 322,627 + -0.1 322,628 - -0.0 322,643 - -1.7 322,649 + -1.2 322,700 + -2.0 323,059 + PGA1_c03360 0.48 -2.4 323,059 + PGA1_c03360 0.48 +0.3 323,082 - PGA1_c03360 0.51 +1.8 323,092 - PGA1_c03360 0.52 +0.5 323,092 - PGA1_c03360 0.52 -0.0 323,092 - PGA1_c03360 0.52 -1.6 323,242 - PGA1_c03360 0.71 -1.8 323,440 + -1.9 323,445 + +1.1 323,445 + -0.9 323,445 + -1.6 323,445 + +1.5 323,504 - +0.2 323,635 - PGA1_c03365 0.10 +0.3 323,685 + PGA1_c03365 0.38 +1.8 323,702 + PGA1_c03365 0.47 -0.4 323,777 - PGA1_c03365 0.89 -0.4 323,777 - PGA1_c03365 0.89 +1.1 323,777 - PGA1_c03365 0.89 +0.1 323,813 + +1.6 323,847 - -2.6 323,847 - +1.4 323,868 + -0.4 323,915 - +0.6 323,923 + +0.0 324,017 + PGA1_c03370 0.28 -1.6 324,017 + PGA1_c03370 0.28 +0.1 324,024 + PGA1_c03370 0.31 -0.2 324,087 - PGA1_c03370 0.61 -0.4 324,120 + PGA1_c03370 0.77 -0.7 324,128 + PGA1_c03370 0.81 -0.0 324,128 + PGA1_c03370 0.81 +0.8 324,199 - +1.2 324,222 + +0.9 324,227 + +2.6 324,232 + -2.9 324,235 - -0.9 324,235 - +1.5 324,235 - +0.2 324,235 - -3.2 324,240 - -2.9 324,277 + +1.2 324,278 + +0.5 324,278 + +0.8 324,278 + -0.8 324,286 - -0.2 324,286 - -0.0 324,286 - -1.6 324,339 - +1.0 324,370 + PGA1_c03380 0.11 +0.8 324,420 - PGA1_c03380 0.16 +0.9 324,434 - PGA1_c03380 0.18 -0.4
Or see this region's nucleotide sequence