Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31950

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c31930 and PGA1_c31940 overlap by 4 nucleotidesPGA1_c31940 and PGA1_c31950 overlap by 28 nucleotidesPGA1_c31950 and PGA1_c31960 are separated by 146 nucleotides PGA1_c31930: PGA1_c31930 - putative transporter, MFS family, at 3,347,535 to 3,348,899 _c31930 PGA1_c31940: PGA1_c31940 - penicillin-insensitive murein endopeptidase MepA, at 3,348,896 to 3,349,819 _c31940 PGA1_c31950: PGA1_c31950 - Uncharacterized protein conserved in bacteria, at 3,349,792 to 3,350,721 _c31950 PGA1_c31960: PGA1_c31960 - conserved hypothetical integral membrane protein, at 3,350,868 to 3,351,500 _c31960 Position (kb) 3349 3350 3351Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3348.800 kb on + strandat 3348.808 kb on + strandat 3348.808 kb on - strandat 3348.869 kb on - strandat 3348.874 kb on - strandat 3348.874 kb on - strandat 3348.877 kb on + strandat 3348.880 kb on - strandat 3348.901 kb on - strandat 3348.910 kb on + strandat 3348.912 kb on + strandat 3348.931 kb on + strandat 3348.931 kb on + strandat 3348.939 kb on - strandat 3348.939 kb on - strandat 3348.939 kb on - strandat 3348.977 kb on - strandat 3349.001 kb on + strand, within PGA1_c31940at 3349.078 kb on - strand, within PGA1_c31940at 3349.117 kb on + strand, within PGA1_c31940at 3349.125 kb on - strand, within PGA1_c31940at 3349.125 kb on - strand, within PGA1_c31940at 3349.135 kb on - strand, within PGA1_c31940at 3349.164 kb on - strand, within PGA1_c31940at 3349.177 kb on + strand, within PGA1_c31940at 3349.202 kb on + strand, within PGA1_c31940at 3349.202 kb on + strand, within PGA1_c31940at 3349.202 kb on + strand, within PGA1_c31940at 3349.202 kb on + strand, within PGA1_c31940at 3349.202 kb on + strand, within PGA1_c31940at 3349.202 kb on + strand, within PGA1_c31940at 3349.210 kb on - strand, within PGA1_c31940at 3349.360 kb on + strand, within PGA1_c31940at 3349.368 kb on - strand, within PGA1_c31940at 3349.405 kb on + strand, within PGA1_c31940at 3349.405 kb on + strand, within PGA1_c31940at 3349.428 kb on - strand, within PGA1_c31940at 3349.444 kb on + strand, within PGA1_c31940at 3349.452 kb on - strand, within PGA1_c31940at 3349.515 kb on + strand, within PGA1_c31940at 3349.525 kb on - strand, within PGA1_c31940at 3349.583 kb on - strand, within PGA1_c31940at 3349.585 kb on + strand, within PGA1_c31940at 3349.633 kb on - strand, within PGA1_c31940at 3349.653 kb on - strand, within PGA1_c31940at 3349.668 kb on + strand, within PGA1_c31940at 3349.698 kb on - strand, within PGA1_c31940at 3349.732 kb on + strandat 3349.739 kb on - strandat 3349.740 kb on - strandat 3349.755 kb on - strandat 3349.755 kb on - strandat 3349.786 kb on - strandat 3349.838 kb on + strandat 3349.846 kb on - strandat 3349.846 kb on - strandat 3349.846 kb on - strandat 3349.846 kb on - strandat 3349.856 kb on - strandat 3349.877 kb on - strandat 3349.896 kb on + strand, within PGA1_c31950at 3349.896 kb on + strand, within PGA1_c31950at 3349.911 kb on + strand, within PGA1_c31950at 3349.929 kb on - strand, within PGA1_c31950at 3349.939 kb on - strand, within PGA1_c31950at 3350.007 kb on - strand, within PGA1_c31950at 3350.041 kb on - strand, within PGA1_c31950at 3350.054 kb on - strand, within PGA1_c31950at 3350.061 kb on - strand, within PGA1_c31950at 3350.062 kb on + strand, within PGA1_c31950at 3350.067 kb on + strand, within PGA1_c31950at 3350.103 kb on + strand, within PGA1_c31950at 3350.116 kb on - strand, within PGA1_c31950at 3350.117 kb on + strand, within PGA1_c31950at 3350.197 kb on - strand, within PGA1_c31950at 3350.198 kb on - strand, within PGA1_c31950at 3350.220 kb on + strand, within PGA1_c31950at 3350.227 kb on + strand, within PGA1_c31950at 3350.228 kb on - strand, within PGA1_c31950at 3350.235 kb on - strand, within PGA1_c31950at 3350.235 kb on - strand, within PGA1_c31950at 3350.235 kb on - strand, within PGA1_c31950at 3350.283 kb on + strand, within PGA1_c31950at 3350.299 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.325 kb on + strand, within PGA1_c31950at 3350.333 kb on - strand, within PGA1_c31950at 3350.333 kb on - strand, within PGA1_c31950at 3350.333 kb on - strand, within PGA1_c31950at 3350.333 kb on - strand, within PGA1_c31950at 3350.333 kb on - strand, within PGA1_c31950at 3350.333 kb on - strand, within PGA1_c31950at 3350.333 kb on - strand, within PGA1_c31950at 3350.333 kb on - strand, within PGA1_c31950at 3350.333 kb on - strand, within PGA1_c31950at 3350.333 kb on - strand, within PGA1_c31950at 3350.333 kb on - strand, within PGA1_c31950at 3350.333 kb on - strand, within PGA1_c31950at 3350.335 kb on - strand, within PGA1_c31950at 3350.337 kb on + strand, within PGA1_c31950at 3350.392 kb on - strand, within PGA1_c31950at 3350.493 kb on - strand, within PGA1_c31950at 3350.497 kb on + strand, within PGA1_c31950at 3350.505 kb on - strand, within PGA1_c31950at 3350.641 kb on - strandat 3350.641 kb on - strandat 3350.655 kb on + strandat 3350.663 kb on - strandat 3350.711 kb on + strandat 3350.711 kb on + strandat 3350.726 kb on + strandat 3350.729 kb on - strandat 3350.729 kb on - strandat 3350.732 kb on + strandat 3350.738 kb on + strandat 3350.740 kb on - strandat 3350.744 kb on + strandat 3350.744 kb on + strandat 3350.752 kb on - strandat 3350.752 kb on - strandat 3350.752 kb on - strandat 3350.752 kb on - strandat 3350.805 kb on + strandat 3350.835 kb on - strandat 3350.908 kb on + strandat 3350.927 kb on - strandat 3350.971 kb on + strand, within PGA1_c31960at 3350.978 kb on - strand, within PGA1_c31960at 3350.988 kb on - strand, within PGA1_c31960at 3350.989 kb on - strand, within PGA1_c31960at 3350.994 kb on + strand, within PGA1_c31960at 3351.030 kb on + strand, within PGA1_c31960at 3351.033 kb on - strand, within PGA1_c31960at 3351.051 kb on - strand, within PGA1_c31960at 3351.106 kb on - strand, within PGA1_c31960at 3351.150 kb on + strand, within PGA1_c31960at 3351.150 kb on + strand, within PGA1_c31960at 3351.158 kb on - strand, within PGA1_c31960at 3351.158 kb on - strand, within PGA1_c31960at 3351.191 kb on - strand, within PGA1_c31960at 3351.203 kb on + strand, within PGA1_c31960at 3351.206 kb on - strand, within PGA1_c31960at 3351.211 kb on - strand, within PGA1_c31960at 3351.228 kb on + strand, within PGA1_c31960at 3351.233 kb on + strand, within PGA1_c31960at 3351.243 kb on - strand, within PGA1_c31960at 3351.267 kb on + strand, within PGA1_c31960at 3351.267 kb on + strand, within PGA1_c31960at 3351.272 kb on + strand, within PGA1_c31960at 3351.280 kb on - strand, within PGA1_c31960at 3351.297 kb on + strand, within PGA1_c31960at 3351.305 kb on - strand, within PGA1_c31960at 3351.307 kb on + strand, within PGA1_c31960at 3351.307 kb on + strand, within PGA1_c31960at 3351.307 kb on + strand, within PGA1_c31960at 3351.307 kb on + strand, within PGA1_c31960at 3351.310 kb on - strand, within PGA1_c31960at 3351.310 kb on - strand, within PGA1_c31960at 3351.380 kb on + strand, within PGA1_c31960at 3351.385 kb on + strand, within PGA1_c31960at 3351.459 kb on + strandat 3351.476 kb on - strandat 3351.476 kb on - strandat 3351.479 kb on + strandat 3351.480 kb on + strandat 3351.488 kb on - strandat 3351.553 kb on - strandat 3351.553 kb on - strandat 3351.579 kb on + strandat 3351.593 kb on - strandat 3351.596 kb on + strandat 3351.610 kb on - strandat 3351.687 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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3,348,800 + -0.2
3,348,808 + +0.6
3,348,808 - -1.7
3,348,869 - -0.6
3,348,874 - -1.8
3,348,874 - +1.3
3,348,877 + +1.4
3,348,880 - +1.6
3,348,901 - -2.4
3,348,910 + -1.1
3,348,912 + +0.6
3,348,931 + +1.9
3,348,931 + +0.2
3,348,939 - -0.3
3,348,939 - +0.2
3,348,939 - -0.2
3,348,977 - +0.8
3,349,001 + PGA1_c31940 0.11 -1.8
3,349,078 - PGA1_c31940 0.20 +2.7
3,349,117 + PGA1_c31940 0.24 +1.9
3,349,125 - PGA1_c31940 0.25 +0.6
3,349,125 - PGA1_c31940 0.25 +0.0
3,349,135 - PGA1_c31940 0.26 -0.4
3,349,164 - PGA1_c31940 0.29 -1.1
3,349,177 + PGA1_c31940 0.30 -1.1
3,349,202 + PGA1_c31940 0.33 -0.1
3,349,202 + PGA1_c31940 0.33 +0.3
3,349,202 + PGA1_c31940 0.33 -0.5
3,349,202 + PGA1_c31940 0.33 -1.5
3,349,202 + PGA1_c31940 0.33 -2.4
3,349,202 + PGA1_c31940 0.33 -1.2
3,349,210 - PGA1_c31940 0.34 +0.4
3,349,360 + PGA1_c31940 0.50 +0.2
3,349,368 - PGA1_c31940 0.51 -2.2
3,349,405 + PGA1_c31940 0.55 +0.6
3,349,405 + PGA1_c31940 0.55 +0.8
3,349,428 - PGA1_c31940 0.58 -0.6
3,349,444 + PGA1_c31940 0.59 -2.7
3,349,452 - PGA1_c31940 0.60 +0.5
3,349,515 + PGA1_c31940 0.67 +2.3
3,349,525 - PGA1_c31940 0.68 +1.4
3,349,583 - PGA1_c31940 0.74 +0.2
3,349,585 + PGA1_c31940 0.75 -1.3
3,349,633 - PGA1_c31940 0.80 +0.8
3,349,653 - PGA1_c31940 0.82 -0.2
3,349,668 + PGA1_c31940 0.84 +0.4
3,349,698 - PGA1_c31940 0.87 +0.5
3,349,732 + -0.1
3,349,739 - -0.1
3,349,740 - -1.7
3,349,755 - -0.1
3,349,755 - +1.7
3,349,786 - +1.1
3,349,838 + -0.8
3,349,846 - -0.5
3,349,846 - +0.5
3,349,846 - +0.7
3,349,846 - +1.9
3,349,856 - +2.1
3,349,877 - -2.0
3,349,896 + PGA1_c31950 0.11 +0.0
3,349,896 + PGA1_c31950 0.11 -0.0
3,349,911 + PGA1_c31950 0.13 +0.3
3,349,929 - PGA1_c31950 0.15 +1.1
3,349,939 - PGA1_c31950 0.16 +0.3
3,350,007 - PGA1_c31950 0.23 +0.8
3,350,041 - PGA1_c31950 0.27 +2.8
3,350,054 - PGA1_c31950 0.28 +0.3
3,350,061 - PGA1_c31950 0.29 -2.2
3,350,062 + PGA1_c31950 0.29 -0.8
3,350,067 + PGA1_c31950 0.30 +1.4
3,350,103 + PGA1_c31950 0.33 +0.6
3,350,116 - PGA1_c31950 0.35 -0.5
3,350,117 + PGA1_c31950 0.35 -2.8
3,350,197 - PGA1_c31950 0.44 +1.2
3,350,198 - PGA1_c31950 0.44 +0.4
3,350,220 + PGA1_c31950 0.46 -1.5
3,350,227 + PGA1_c31950 0.47 +0.3
3,350,228 - PGA1_c31950 0.47 +0.8
3,350,235 - PGA1_c31950 0.48 +0.3
3,350,235 - PGA1_c31950 0.48 +3.0
3,350,235 - PGA1_c31950 0.48 +1.4
3,350,283 + PGA1_c31950 0.53 +1.0
3,350,299 + PGA1_c31950 0.55 -0.1
3,350,325 + PGA1_c31950 0.57 +0.4
3,350,325 + PGA1_c31950 0.57 -0.1
3,350,325 + PGA1_c31950 0.57 +0.7
3,350,325 + PGA1_c31950 0.57 +1.0
3,350,325 + PGA1_c31950 0.57 +1.2
3,350,325 + PGA1_c31950 0.57 +3.1
3,350,325 + PGA1_c31950 0.57 -0.8
3,350,325 + PGA1_c31950 0.57 -0.3
3,350,325 + PGA1_c31950 0.57 +0.7
3,350,325 + PGA1_c31950 0.57 +1.2
3,350,325 + PGA1_c31950 0.57 +1.3
3,350,325 + PGA1_c31950 0.57 -1.2
3,350,325 + PGA1_c31950 0.57 +1.5
3,350,325 + PGA1_c31950 0.57 +0.6
3,350,325 + PGA1_c31950 0.57 +1.2
3,350,325 + PGA1_c31950 0.57 -0.5
3,350,325 + PGA1_c31950 0.57 +0.1
3,350,325 + PGA1_c31950 0.57 -0.4
3,350,333 - PGA1_c31950 0.58 +0.8
3,350,333 - PGA1_c31950 0.58 -2.1
3,350,333 - PGA1_c31950 0.58 -0.6
3,350,333 - PGA1_c31950 0.58 -0.7
3,350,333 - PGA1_c31950 0.58 +0.3
3,350,333 - PGA1_c31950 0.58 -1.8
3,350,333 - PGA1_c31950 0.58 +1.8
3,350,333 - PGA1_c31950 0.58 -0.9
3,350,333 - PGA1_c31950 0.58 -0.0
3,350,333 - PGA1_c31950 0.58 +1.2
3,350,333 - PGA1_c31950 0.58 -1.1
3,350,333 - PGA1_c31950 0.58 +1.2
3,350,335 - PGA1_c31950 0.58 +0.8
3,350,337 + PGA1_c31950 0.59 +0.4
3,350,392 - PGA1_c31950 0.65 +0.6
3,350,493 - PGA1_c31950 0.75 -0.9
3,350,497 + PGA1_c31950 0.76 -0.4
3,350,505 - PGA1_c31950 0.77 +1.1
3,350,641 - -0.6
3,350,641 - -3.5
3,350,655 + -2.6
3,350,663 - -0.6
3,350,711 + +0.4
3,350,711 + +0.5
3,350,726 + +0.9
3,350,729 - -2.1
3,350,729 - -1.5
3,350,732 + +0.2
3,350,738 + +0.2
3,350,740 - -1.7
3,350,744 + -1.9
3,350,744 + -1.6
3,350,752 - +0.0
3,350,752 - +2.5
3,350,752 - +0.1
3,350,752 - +1.7
3,350,805 + -0.4
3,350,835 - +0.1
3,350,908 + +1.0
3,350,927 - +0.7
3,350,971 + PGA1_c31960 0.16 +1.2
3,350,978 - PGA1_c31960 0.17 +0.9
3,350,988 - PGA1_c31960 0.19 -0.7
3,350,989 - PGA1_c31960 0.19 +1.0
3,350,994 + PGA1_c31960 0.20 +1.0
3,351,030 + PGA1_c31960 0.26 +0.3
3,351,033 - PGA1_c31960 0.26 +1.1
3,351,051 - PGA1_c31960 0.29 +1.9
3,351,106 - PGA1_c31960 0.38 +1.4
3,351,150 + PGA1_c31960 0.45 +1.3
3,351,150 + PGA1_c31960 0.45 +1.3
3,351,158 - PGA1_c31960 0.46 +0.5
3,351,158 - PGA1_c31960 0.46 +1.4
3,351,191 - PGA1_c31960 0.51 +2.0
3,351,203 + PGA1_c31960 0.53 +1.2
3,351,206 - PGA1_c31960 0.53 +1.7
3,351,211 - PGA1_c31960 0.54 +1.1
3,351,228 + PGA1_c31960 0.57 -0.1
3,351,233 + PGA1_c31960 0.58 -0.4
3,351,243 - PGA1_c31960 0.59 -1.3
3,351,267 + PGA1_c31960 0.63 -0.3
3,351,267 + PGA1_c31960 0.63 +1.4
3,351,272 + PGA1_c31960 0.64 -2.4
3,351,280 - PGA1_c31960 0.65 +0.1
3,351,297 + PGA1_c31960 0.68 +1.0
3,351,305 - PGA1_c31960 0.69 -1.9
3,351,307 + PGA1_c31960 0.69 +1.8
3,351,307 + PGA1_c31960 0.69 -0.3
3,351,307 + PGA1_c31960 0.69 +1.3
3,351,307 + PGA1_c31960 0.69 +0.9
3,351,310 - PGA1_c31960 0.70 -0.2
3,351,310 - PGA1_c31960 0.70 +1.3
3,351,380 + PGA1_c31960 0.81 +0.6
3,351,385 + PGA1_c31960 0.82 +0.1
3,351,459 + +1.0
3,351,476 - +0.3
3,351,476 - -1.6
3,351,479 + +0.9
3,351,480 + +0.3
3,351,488 - -0.9
3,351,553 - +0.5
3,351,553 - +1.1
3,351,579 + -1.7
3,351,593 - +2.5
3,351,596 + -2.2
3,351,610 - +0.8
3,351,687 + +0.3

Or see this region's nucleotide sequence