Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0280

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0278 and Psest_0279 are separated by 26 nucleotidesPsest_0279 and Psest_0280 are separated by 9 nucleotidesPsest_0280 and Psest_0281 are separated by 128 nucleotides Psest_0278: Psest_0278 - hypothetical protein, at 293,585 to 294,007 _0278 Psest_0279: Psest_0279 - methionine biosynthesis protein MetW, at 294,034 to 294,633 _0279 Psest_0280: Psest_0280 - homoserine O-acetyltransferase, at 294,643 to 295,782 _0280 Psest_0281: Psest_0281 - Dynamin family., at 295,911 to 297,872 _0281 Position (kb) 294 295 296Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 293.649 kb on - strand, within Psest_0278at 293.703 kb on + strand, within Psest_0278at 293.703 kb on + strand, within Psest_0278at 293.704 kb on - strand, within Psest_0278at 293.704 kb on - strand, within Psest_0278at 293.704 kb on - strand, within Psest_0278at 293.706 kb on + strand, within Psest_0278at 293.706 kb on + strand, within Psest_0278at 293.706 kb on + strand, within Psest_0278at 293.706 kb on + strand, within Psest_0278at 293.706 kb on + strand, within Psest_0278at 293.707 kb on - strand, within Psest_0278at 293.707 kb on - strand, within Psest_0278at 293.707 kb on - strand, within Psest_0278at 293.707 kb on - strand, within Psest_0278at 293.707 kb on - strand, within Psest_0278at 293.913 kb on + strand, within Psest_0278at 293.913 kb on + strand, within Psest_0278at 293.913 kb on + strand, within Psest_0278at 293.913 kb on + strand, within Psest_0278at 293.914 kb on - strand, within Psest_0278at 293.914 kb on - strand, within Psest_0278at 293.914 kb on - strand, within Psest_0278at 293.914 kb on - strand, within Psest_0278at 293.914 kb on - strand, within Psest_0278at 293.914 kb on - strand, within Psest_0278at 293.914 kb on - strand, within Psest_0278at 293.914 kb on - strand, within Psest_0278at 293.925 kb on + strand, within Psest_0278at 293.926 kb on - strand, within Psest_0278at 293.926 kb on - strand, within Psest_0278at 293.926 kb on - strand, within Psest_0278at 294.007 kb on + strandat 294.007 kb on + strandat 294.007 kb on + strandat 294.008 kb on - strandat 294.008 kb on - strandat 294.013 kb on + strandat 294.059 kb on + strandat 294.060 kb on - strandat 294.218 kb on + strand, within Psest_0279at 294.218 kb on + strand, within Psest_0279at 294.219 kb on - strand, within Psest_0279at 294.219 kb on - strand, within Psest_0279at 294.219 kb on - strand, within Psest_0279at 294.219 kb on - strand, within Psest_0279at 294.219 kb on - strand, within Psest_0279at 294.219 kb on - strand, within Psest_0279at 294.219 kb on - strand, within Psest_0279at 294.227 kb on + strand, within Psest_0279at 294.227 kb on + strand, within Psest_0279at 294.228 kb on - strand, within Psest_0279at 294.228 kb on - strand, within Psest_0279at 294.644 kb on + strandat 294.644 kb on + strandat 294.645 kb on - strandat 294.646 kb on + strandat 294.646 kb on + strandat 294.646 kb on + strandat 294.646 kb on + strandat 294.646 kb on + strandat 294.646 kb on + strandat 294.647 kb on - strandat 294.647 kb on - strandat 294.665 kb on + strandat 294.743 kb on + strandat 294.744 kb on - strandat 294.905 kb on + strand, within Psest_0280at 294.906 kb on - strand, within Psest_0280at 294.906 kb on - strand, within Psest_0280at 294.906 kb on - strand, within Psest_0280at 294.932 kb on + strand, within Psest_0280at 294.933 kb on - strand, within Psest_0280at 294.933 kb on - strand, within Psest_0280at 294.933 kb on - strand, within Psest_0280at 294.933 kb on - strand, within Psest_0280at 294.933 kb on - strand, within Psest_0280at 294.933 kb on - strand, within Psest_0280at 294.937 kb on - strand, within Psest_0280at 294.937 kb on - strand, within Psest_0280at 294.937 kb on - strand, within Psest_0280at 294.983 kb on + strand, within Psest_0280at 294.984 kb on - strand, within Psest_0280at 294.984 kb on - strand, within Psest_0280at 295.019 kb on + strand, within Psest_0280at 295.019 kb on + strand, within Psest_0280at 295.019 kb on + strand, within Psest_0280at 295.019 kb on + strand, within Psest_0280at 295.020 kb on - strand, within Psest_0280at 295.082 kb on + strand, within Psest_0280at 295.083 kb on - strand, within Psest_0280at 295.083 kb on - strand, within Psest_0280at 295.419 kb on - strand, within Psest_0280at 295.512 kb on + strand, within Psest_0280at 295.512 kb on + strand, within Psest_0280at 295.512 kb on + strand, within Psest_0280at 295.513 kb on - strand, within Psest_0280at 295.513 kb on - strand, within Psest_0280at 295.513 kb on - strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.516 kb on + strand, within Psest_0280at 295.517 kb on - strand, within Psest_0280at 295.517 kb on - strand, within Psest_0280at 295.517 kb on - strand, within Psest_0280at 295.517 kb on - strand, within Psest_0280at 295.517 kb on - strand, within Psest_0280at 295.560 kb on + strand, within Psest_0280at 295.658 kb on + strand, within Psest_0280at 295.658 kb on + strand, within Psest_0280at 295.658 kb on + strand, within Psest_0280at 295.658 kb on + strand, within Psest_0280at 295.658 kb on + strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.659 kb on - strand, within Psest_0280at 295.668 kb on - strand, within Psest_0280at 295.668 kb on - strand, within Psest_0280at 295.826 kb on - strandat 296.399 kb on - strand, within Psest_0281at 296.757 kb on + strand, within Psest_0281at 296.757 kb on + strand, within Psest_0281at 296.757 kb on + strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281at 296.758 kb on - strand, within Psest_0281

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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293,649 - Psest_0278 0.15 -0.7
293,703 + Psest_0278 0.28 -0.6
293,703 + Psest_0278 0.28 -1.6
293,704 - Psest_0278 0.28 +0.3
293,704 - Psest_0278 0.28 -4.1
293,704 - Psest_0278 0.28 -0.7
293,706 + Psest_0278 0.29 -1.2
293,706 + Psest_0278 0.29 +0.3
293,706 + Psest_0278 0.29 +0.9
293,706 + Psest_0278 0.29 +0.2
293,706 + Psest_0278 0.29 -2.0
293,707 - Psest_0278 0.29 -1.3
293,707 - Psest_0278 0.29 -0.8
293,707 - Psest_0278 0.29 -1.4
293,707 - Psest_0278 0.29 -0.1
293,707 - Psest_0278 0.29 -0.9
293,913 + Psest_0278 0.78 -0.4
293,913 + Psest_0278 0.78 -1.1
293,913 + Psest_0278 0.78 +0.6
293,913 + Psest_0278 0.78 -0.7
293,914 - Psest_0278 0.78 -2.8
293,914 - Psest_0278 0.78 -0.7
293,914 - Psest_0278 0.78 -0.2
293,914 - Psest_0278 0.78 -1.3
293,914 - Psest_0278 0.78 -0.4
293,914 - Psest_0278 0.78 -0.3
293,914 - Psest_0278 0.78 -0.8
293,914 - Psest_0278 0.78 -0.1
293,925 + Psest_0278 0.80 -2.2
293,926 - Psest_0278 0.81 +0.1
293,926 - Psest_0278 0.81 -1.2
293,926 - Psest_0278 0.81 -2.6
294,007 + +0.1
294,007 + +0.6
294,007 + -1.7
294,008 - -1.0
294,008 - -1.2
294,013 + -0.4
294,059 + -1.5
294,060 - -0.0
294,218 + Psest_0279 0.31 -1.5
294,218 + Psest_0279 0.31 -1.7
294,219 - Psest_0279 0.31 -1.4
294,219 - Psest_0279 0.31 -2.3
294,219 - Psest_0279 0.31 -0.8
294,219 - Psest_0279 0.31 -0.9
294,219 - Psest_0279 0.31 -1.6
294,219 - Psest_0279 0.31 -3.9
294,219 - Psest_0279 0.31 -1.3
294,227 + Psest_0279 0.32 -0.3
294,227 + Psest_0279 0.32 -1.5
294,228 - Psest_0279 0.32 -1.7
294,228 - Psest_0279 0.32 -1.7
294,644 + -2.4
294,644 + -0.2
294,645 - -1.0
294,646 + -2.9
294,646 + -1.5
294,646 + -2.2
294,646 + -0.3
294,646 + -2.4
294,646 + -0.7
294,647 - -0.5
294,647 - +0.3
294,665 + -3.4
294,743 + -1.4
294,744 - -2.6
294,905 + Psest_0280 0.23 -1.2
294,906 - Psest_0280 0.23 -2.8
294,906 - Psest_0280 0.23 -1.2
294,906 - Psest_0280 0.23 -2.4
294,932 + Psest_0280 0.25 -2.1
294,933 - Psest_0280 0.25 -2.2
294,933 - Psest_0280 0.25 -2.4
294,933 - Psest_0280 0.25 -1.4
294,933 - Psest_0280 0.25 -1.2
294,933 - Psest_0280 0.25 -3.5
294,933 - Psest_0280 0.25 -2.1
294,937 - Psest_0280 0.26 -3.2
294,937 - Psest_0280 0.26 -3.6
294,937 - Psest_0280 0.26 -1.1
294,983 + Psest_0280 0.30 -1.8
294,984 - Psest_0280 0.30 -1.2
294,984 - Psest_0280 0.30 -3.3
295,019 + Psest_0280 0.33 -2.8
295,019 + Psest_0280 0.33 -2.8
295,019 + Psest_0280 0.33 -2.2
295,019 + Psest_0280 0.33 -3.6
295,020 - Psest_0280 0.33 -2.2
295,082 + Psest_0280 0.39 -1.2
295,083 - Psest_0280 0.39 -2.2
295,083 - Psest_0280 0.39 -1.8
295,419 - Psest_0280 0.68 -1.2
295,512 + Psest_0280 0.76 -0.7
295,512 + Psest_0280 0.76 -3.3
295,512 + Psest_0280 0.76 -1.1
295,513 - Psest_0280 0.76 -1.9
295,513 - Psest_0280 0.76 -0.3
295,513 - Psest_0280 0.76 -1.4
295,516 + Psest_0280 0.77 -3.1
295,516 + Psest_0280 0.77 -2.4
295,516 + Psest_0280 0.77 +0.2
295,516 + Psest_0280 0.77 -2.9
295,516 + Psest_0280 0.77 -3.6
295,516 + Psest_0280 0.77 -0.6
295,516 + Psest_0280 0.77 -3.1
295,516 + Psest_0280 0.77 -1.7
295,516 + Psest_0280 0.77 -3.1
295,516 + Psest_0280 0.77 -0.0
295,516 + Psest_0280 0.77 -2.3
295,517 - Psest_0280 0.77 -1.2
295,517 - Psest_0280 0.77 -1.0
295,517 - Psest_0280 0.77 -1.9
295,517 - Psest_0280 0.77 -1.5
295,517 - Psest_0280 0.77 -2.0
295,560 + Psest_0280 0.80 -2.0
295,658 + Psest_0280 0.89 -0.2
295,658 + Psest_0280 0.89 -0.4
295,658 + Psest_0280 0.89 -0.6
295,658 + Psest_0280 0.89 -3.7
295,658 + Psest_0280 0.89 -3.5
295,659 - Psest_0280 0.89 -2.0
295,659 - Psest_0280 0.89 -1.5
295,659 - Psest_0280 0.89 -0.8
295,659 - Psest_0280 0.89 -2.6
295,659 - Psest_0280 0.89 -2.1
295,659 - Psest_0280 0.89 -0.8
295,659 - Psest_0280 0.89 -2.0
295,668 - Psest_0280 0.90 -1.4
295,668 - Psest_0280 0.90 -2.9
295,826 - -2.0
296,399 - Psest_0281 0.25 +1.6
296,757 + Psest_0281 0.43 -1.0
296,757 + Psest_0281 0.43 +1.6
296,757 + Psest_0281 0.43 +0.7
296,758 - Psest_0281 0.43 -0.7
296,758 - Psest_0281 0.43 -0.7
296,758 - Psest_0281 0.43 +1.2
296,758 - Psest_0281 0.43 +0.0
296,758 - Psest_0281 0.43 -2.2
296,758 - Psest_0281 0.43 -2.4
296,758 - Psest_0281 0.43 +0.8
296,758 - Psest_0281 0.43 +0.3

Or see this region's nucleotide sequence