Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0273 and Psest_0274 are separated by 133 nucleotides Psest_0274 and Psest_0275 overlap by 4 nucleotides Psest_0275 and Psest_0276 are separated by 9 nucleotides Psest_0276 and Psest_0277 are separated by 65 nucleotides Psest_0277 and Psest_0278 overlap by 4 nucleotides
Psest_0273: Psest_0273 - arginine/ornithine antiporter, at 289,492 to 290,919
_0273
Psest_0274: Psest_0274 - hypothetical protein, at 291,053 to 291,466
_0274
Psest_0275: Psest_0275 - Protein of unknown function (DUF3392)., at 291,463 to 291,786
_0275
Psest_0276: Psest_0276 - putative oxygen-independent coproporphyrinogen III oxidase, at 291,796 to 292,929
_0276
Psest_0277: Psest_0277 - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family, at 292,995 to 293,588
_0277
Psest_0278: Psest_0278 - hypothetical protein, at 293,585 to 294,007
_0278
Position (kb) 291
292
293 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 290.891 kb on - strand at 290.891 kb on - strand at 290.891 kb on - strand at 290.891 kb on - strand at 290.891 kb on - strand at 290.924 kb on - strand at 290.955 kb on + strand at 290.955 kb on + strand at 290.979 kb on + strand at 290.980 kb on - strand at 290.980 kb on - strand at 291.023 kb on + strand at 291.024 kb on - strand at 291.123 kb on + strand, within Psest_0274 at 291.123 kb on + strand, within Psest_0274 at 291.123 kb on + strand, within Psest_0274 at 291.123 kb on + strand, within Psest_0274 at 291.124 kb on - strand, within Psest_0274 at 291.124 kb on - strand, within Psest_0274 at 291.124 kb on - strand, within Psest_0274 at 291.212 kb on + strand, within Psest_0274 at 291.212 kb on + strand, within Psest_0274 at 291.212 kb on + strand, within Psest_0274 at 291.213 kb on - strand, within Psest_0274 at 291.222 kb on + strand, within Psest_0274 at 291.243 kb on + strand, within Psest_0274 at 291.243 kb on + strand, within Psest_0274 at 291.243 kb on + strand, within Psest_0274 at 291.244 kb on - strand, within Psest_0274 at 291.244 kb on - strand, within Psest_0274 at 291.244 kb on - strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.246 kb on + strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.247 kb on - strand, within Psest_0274 at 291.249 kb on + strand, within Psest_0274 at 291.250 kb on - strand, within Psest_0274 at 291.250 kb on - strand, within Psest_0274 at 291.464 kb on + strand at 291.464 kb on + strand at 291.465 kb on - strand at 291.527 kb on + strand, within Psest_0275 at 291.527 kb on + strand, within Psest_0275 at 291.527 kb on + strand, within Psest_0275 at 291.527 kb on + strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.528 kb on - strand, within Psest_0275 at 291.723 kb on + strand, within Psest_0275 at 291.775 kb on + strand at 291.797 kb on + strand at 292.067 kb on + strand, within Psest_0276 at 292.106 kb on + strand, within Psest_0276 at 292.107 kb on - strand, within Psest_0276 at 292.107 kb on - strand, within Psest_0276 at 292.176 kb on - strand, within Psest_0276 at 292.176 kb on - strand, within Psest_0276 at 292.229 kb on + strand, within Psest_0276 at 292.230 kb on - strand, within Psest_0276 at 292.598 kb on + strand, within Psest_0276 at 292.820 kb on + strand at 292.821 kb on - strand at 292.821 kb on - strand at 292.907 kb on + strand at 292.907 kb on + strand at 292.908 kb on - strand at 292.956 kb on + strand at 292.957 kb on - strand at 292.999 kb on - strand at 293.332 kb on + strand, within Psest_0277 at 293.332 kb on + strand, within Psest_0277 at 293.333 kb on - strand, within Psest_0277 at 293.649 kb on - strand, within Psest_0278 at 293.703 kb on + strand, within Psest_0278 at 293.703 kb on + strand, within Psest_0278 at 293.704 kb on - strand, within Psest_0278 at 293.704 kb on - strand, within Psest_0278 at 293.704 kb on - strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.706 kb on + strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.707 kb on - strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.913 kb on + strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.914 kb on - strand, within Psest_0278 at 293.925 kb on + strand, within Psest_0278 at 293.926 kb on - strand, within Psest_0278 at 293.926 kb on - strand, within Psest_0278 at 293.926 kb on - strand, within Psest_0278
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 290,891 - -0.6 290,891 - -1.0 290,891 - +0.6 290,891 - -1.2 290,891 - -0.3 290,924 - -0.7 290,955 + -0.6 290,955 + -0.1 290,979 + +0.4 290,980 - -0.7 290,980 - -0.9 291,023 + +0.3 291,024 - -0.4 291,123 + Psest_0274 0.17 -0.3 291,123 + Psest_0274 0.17 -0.6 291,123 + Psest_0274 0.17 -0.7 291,123 + Psest_0274 0.17 +1.0 291,124 - Psest_0274 0.17 -0.3 291,124 - Psest_0274 0.17 -2.0 291,124 - Psest_0274 0.17 -0.1 291,212 + Psest_0274 0.38 +0.9 291,212 + Psest_0274 0.38 -0.8 291,212 + Psest_0274 0.38 -1.5 291,213 - Psest_0274 0.39 -1.3 291,222 + Psest_0274 0.41 -0.2 291,243 + Psest_0274 0.46 -0.4 291,243 + Psest_0274 0.46 +0.4 291,243 + Psest_0274 0.46 -0.9 291,244 - Psest_0274 0.46 +0.1 291,244 - Psest_0274 0.46 +0.4 291,244 - Psest_0274 0.46 -3.2 291,246 + Psest_0274 0.47 +0.2 291,246 + Psest_0274 0.47 +0.1 291,246 + Psest_0274 0.47 +0.0 291,246 + Psest_0274 0.47 +0.3 291,246 + Psest_0274 0.47 -1.8 291,247 - Psest_0274 0.47 -0.1 291,247 - Psest_0274 0.47 -0.9 291,247 - Psest_0274 0.47 +0.7 291,247 - Psest_0274 0.47 -1.6 291,247 - Psest_0274 0.47 +0.6 291,247 - Psest_0274 0.47 -0.5 291,247 - Psest_0274 0.47 -2.2 291,247 - Psest_0274 0.47 +0.0 291,247 - Psest_0274 0.47 -0.3 291,249 + Psest_0274 0.47 -0.1 291,250 - Psest_0274 0.48 +0.4 291,250 - Psest_0274 0.48 +0.2 291,464 + -0.3 291,464 + +0.1 291,465 - -2.1 291,527 + Psest_0275 0.20 -0.8 291,527 + Psest_0275 0.20 -1.6 291,527 + Psest_0275 0.20 +0.4 291,527 + Psest_0275 0.20 +1.2 291,528 - Psest_0275 0.20 -2.1 291,528 - Psest_0275 0.20 -0.3 291,528 - Psest_0275 0.20 -1.4 291,528 - Psest_0275 0.20 -0.9 291,528 - Psest_0275 0.20 +0.3 291,723 + Psest_0275 0.80 +0.2 291,775 + +0.1 291,797 + +2.5 292,067 + Psest_0276 0.24 +0.5 292,106 + Psest_0276 0.27 -0.3 292,107 - Psest_0276 0.27 -0.4 292,107 - Psest_0276 0.27 -1.8 292,176 - Psest_0276 0.34 +0.2 292,176 - Psest_0276 0.34 -2.5 292,229 + Psest_0276 0.38 -0.9 292,230 - Psest_0276 0.38 -3.0 292,598 + Psest_0276 0.71 -2.7 292,820 + -1.2 292,821 - -0.5 292,821 - -1.4 292,907 + -0.1 292,907 + +1.0 292,908 - -0.6 292,956 + -1.0 292,957 - -0.5 292,999 - -0.2 293,332 + Psest_0277 0.57 -1.0 293,332 + Psest_0277 0.57 -1.1 293,333 - Psest_0277 0.57 +1.2 293,649 - Psest_0278 0.15 -0.7 293,703 + Psest_0278 0.28 -0.6 293,703 + Psest_0278 0.28 -1.6 293,704 - Psest_0278 0.28 +0.3 293,704 - Psest_0278 0.28 -4.1 293,704 - Psest_0278 0.28 -0.7 293,706 + Psest_0278 0.29 -1.2 293,706 + Psest_0278 0.29 +0.3 293,706 + Psest_0278 0.29 +0.9 293,706 + Psest_0278 0.29 +0.2 293,706 + Psest_0278 0.29 -2.0 293,707 - Psest_0278 0.29 -1.3 293,707 - Psest_0278 0.29 -0.8 293,707 - Psest_0278 0.29 -1.4 293,707 - Psest_0278 0.29 -0.1 293,707 - Psest_0278 0.29 -0.9 293,913 + Psest_0278 0.78 -0.4 293,913 + Psest_0278 0.78 -1.1 293,913 + Psest_0278 0.78 +0.6 293,913 + Psest_0278 0.78 -0.7 293,914 - Psest_0278 0.78 -2.8 293,914 - Psest_0278 0.78 -0.7 293,914 - Psest_0278 0.78 -0.2 293,914 - Psest_0278 0.78 -1.3 293,914 - Psest_0278 0.78 -0.4 293,914 - Psest_0278 0.78 -0.3 293,914 - Psest_0278 0.78 -0.8 293,914 - Psest_0278 0.78 -0.1 293,925 + Psest_0278 0.80 -2.2 293,926 - Psest_0278 0.81 +0.1 293,926 - Psest_0278 0.81 -1.2 293,926 - Psest_0278 0.81 -2.6
Or see this region's nucleotide sequence