Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c26840 and PGA1_c26850 are separated by 392 nucleotides PGA1_c26850 and PGA1_c26860 overlap by 4 nucleotides PGA1_c26860 and PGA1_c26870 are separated by 14 nucleotides PGA1_c26870 and PGA1_c26880 are separated by 1 nucleotides
PGA1_c26840: PGA1_c26840 - putative phenylacetic acid degradation operon negative regulatory protein, at 2,801,526 to 2,802,350
_c26840
PGA1_c26850: PGA1_c26850 - Predicted metal-binding protein, at 2,802,743 to 2,803,168
_c26850
PGA1_c26860: PGA1_c26860 - putative iron transport system, ATP-binding protein, at 2,803,165 to 2,803,950
_c26860
PGA1_c26870: PGA1_c26870 - putative periplasmic binding protein, at 2,803,965 to 2,804,945
_c26870
PGA1_c26880: PGA1_c26880 - putative iron transport system permease protein, at 2,804,947 to 2,806,026
_c26880
Position (kb)
2803
2804 Strain fitness (log2 ratio)
-2
-1
0
1 at 2802.260 kb on - strand, within PGA1_c26840 at 2802.321 kb on - strand at 2802.372 kb on + strand at 2802.382 kb on + strand at 2802.548 kb on - strand at 2802.758 kb on - strand at 2802.913 kb on + strand, within PGA1_c26850 at 2802.913 kb on + strand, within PGA1_c26850 at 2802.913 kb on + strand, within PGA1_c26850 at 2802.913 kb on + strand, within PGA1_c26850 at 2802.921 kb on - strand, within PGA1_c26850 at 2802.921 kb on - strand, within PGA1_c26850 at 2802.967 kb on + strand, within PGA1_c26850 at 2803.961 kb on + strand at 2803.969 kb on - strand at 2804.722 kb on + strand, within PGA1_c26870 at 2804.863 kb on + strand at 2804.908 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 2,802,260 - PGA1_c26840 0.89 +1.7 2,802,321 - -2.6 2,802,372 + -0.5 2,802,382 + -1.5 2,802,548 - -0.6 2,802,758 - -2.6 2,802,913 + PGA1_c26850 0.40 +0.4 2,802,913 + PGA1_c26850 0.40 +0.9 2,802,913 + PGA1_c26850 0.40 +1.2 2,802,913 + PGA1_c26850 0.40 +1.7 2,802,921 - PGA1_c26850 0.42 +0.3 2,802,921 - PGA1_c26850 0.42 -0.9 2,802,967 + PGA1_c26850 0.53 +0.2 2,803,961 + -0.6 2,803,969 - -0.9 2,804,722 + PGA1_c26870 0.77 -0.3 2,804,863 + -0.3 2,804,908 + +1.0
Or see this region's nucleotide sequence