Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0260 and Psest_0261 are separated by 112 nucleotides Psest_0261 and Psest_0262 are separated by 83 nucleotides
Psest_0260: Psest_0260 - Cell division protein, at 274,524 to 275,543
_0260
Psest_0261: Psest_0261 - alternative sigma factor RpoH, at 275,656 to 276,510
_0261
Psest_0262: Psest_0262 - PAS domain S-box, at 276,594 to 279,164
_0262
Position (kb) 275
276
277 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 275.283 kb on + strand, within Psest_0260 at 275.284 kb on - strand, within Psest_0260 at 275.304 kb on + strand, within Psest_0260 at 275.305 kb on - strand, within Psest_0260 at 275.491 kb on + strand at 275.491 kb on + strand at 275.492 kb on - strand at 275.622 kb on + strand at 275.622 kb on + strand at 275.622 kb on + strand at 276.524 kb on - strand at 276.642 kb on + strand at 276.747 kb on - strand at 276.841 kb on + strand at 276.923 kb on + strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 276.924 kb on - strand, within Psest_0262 at 277.176 kb on + strand, within Psest_0262 at 277.234 kb on - strand, within Psest_0262 at 277.386 kb on + strand, within Psest_0262 at 277.386 kb on + strand, within Psest_0262 at 277.386 kb on + strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262 at 277.387 kb on - strand, within Psest_0262
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 275,283 + Psest_0260 0.74 -2.5 275,284 - Psest_0260 0.75 -2.2 275,304 + Psest_0260 0.76 -2.2 275,305 - Psest_0260 0.77 +2.2 275,491 + -2.8 275,491 + -0.9 275,492 - -2.3 275,622 + +0.6 275,622 + +1.6 275,622 + +0.2 276,524 - -0.4 276,642 + -0.6 276,747 - -0.9 276,841 + -0.4 276,923 + Psest_0262 0.13 -0.4 276,924 - Psest_0262 0.13 +1.0 276,924 - Psest_0262 0.13 -0.2 276,924 - Psest_0262 0.13 -0.0 276,924 - Psest_0262 0.13 -0.9 276,924 - Psest_0262 0.13 +0.3 276,924 - Psest_0262 0.13 -1.8 277,176 + Psest_0262 0.23 -1.3 277,234 - Psest_0262 0.25 -0.9 277,386 + Psest_0262 0.31 +0.1 277,386 + Psest_0262 0.31 +0.3 277,386 + Psest_0262 0.31 -0.1 277,387 - Psest_0262 0.31 +0.5 277,387 - Psest_0262 0.31 -2.8 277,387 - Psest_0262 0.31 -0.5 277,387 - Psest_0262 0.31 -2.1 277,387 - Psest_0262 0.31 -1.3 277,387 - Psest_0262 0.31 -1.1 277,387 - Psest_0262 0.31 -2.6
Or see this region's nucleotide sequence