Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2619

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2617 and Psest_2618 are separated by 10 nucleotidesPsest_2618 and Psest_2619 overlap by 4 nucleotidesPsest_2619 and Psest_2620 overlap by 11 nucleotides Psest_2617: Psest_2617 - Flp pilus assembly protein TadC, at 2,799,652 to 2,800,620 _2617 Psest_2618: Psest_2618 - Flp pilus assembly protein TadB, at 2,800,631 to 2,801,617 _2618 Psest_2619: Psest_2619 - Flp pilus assembly protein, ATPase CpaF, at 2,801,614 to 2,803,038 _2619 Psest_2620: Psest_2620 - Flp pilus assembly protein, ATPase CpaE, at 2,803,028 to 2,804,257 _2620 Position (kb) 2801 2802 2803 2804Strain fitness (log2 ratio) -2 -1 0 1 2at 2800.614 kb on - strandat 2800.614 kb on - strandat 2800.743 kb on + strand, within Psest_2618at 2800.744 kb on - strand, within Psest_2618at 2800.838 kb on + strand, within Psest_2618at 2801.013 kb on + strand, within Psest_2618at 2801.084 kb on + strand, within Psest_2618at 2801.084 kb on + strand, within Psest_2618at 2801.329 kb on - strand, within Psest_2618at 2801.421 kb on + strand, within Psest_2618at 2801.422 kb on - strand, within Psest_2618at 2801.422 kb on - strand, within Psest_2618at 2801.595 kb on + strandat 2801.595 kb on + strandat 2801.595 kb on + strandat 2801.595 kb on + strandat 2801.596 kb on - strandat 2801.596 kb on - strandat 2801.724 kb on - strandat 2802.058 kb on + strand, within Psest_2619at 2802.058 kb on + strand, within Psest_2619at 2802.058 kb on + strand, within Psest_2619at 2802.059 kb on - strand, within Psest_2619at 2802.067 kb on - strand, within Psest_2619at 2802.068 kb on - strand, within Psest_2619at 2802.068 kb on - strand, within Psest_2619at 2802.068 kb on - strand, within Psest_2619at 2802.617 kb on + strand, within Psest_2619at 2802.617 kb on + strand, within Psest_2619at 2802.617 kb on + strand, within Psest_2619at 2802.618 kb on - strand, within Psest_2619at 2802.863 kb on + strand, within Psest_2619at 2802.863 kb on + strand, within Psest_2619at 2802.863 kb on + strand, within Psest_2619at 2802.864 kb on - strand, within Psest_2619at 2802.864 kb on - strand, within Psest_2619at 2802.864 kb on - strand, within Psest_2619at 2802.864 kb on - strand, within Psest_2619at 2803.207 kb on - strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.689 kb on - strand, within Psest_2620

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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2,800,614 - -0.6
2,800,614 - +0.8
2,800,743 + Psest_2618 0.11 -1.4
2,800,744 - Psest_2618 0.11 -1.9
2,800,838 + Psest_2618 0.21 -0.6
2,801,013 + Psest_2618 0.39 -2.0
2,801,084 + Psest_2618 0.46 +0.9
2,801,084 + Psest_2618 0.46 +0.3
2,801,329 - Psest_2618 0.71 -0.9
2,801,421 + Psest_2618 0.80 -0.4
2,801,422 - Psest_2618 0.80 -0.2
2,801,422 - Psest_2618 0.80 +0.6
2,801,595 + -0.0
2,801,595 + +1.0
2,801,595 + +0.2
2,801,595 + -0.1
2,801,596 - -2.3
2,801,596 - +1.4
2,801,724 - -1.3
2,802,058 + Psest_2619 0.31 +0.6
2,802,058 + Psest_2619 0.31 +0.0
2,802,058 + Psest_2619 0.31 -1.1
2,802,059 - Psest_2619 0.31 +0.4
2,802,067 - Psest_2619 0.32 +0.0
2,802,068 - Psest_2619 0.32 +0.2
2,802,068 - Psest_2619 0.32 +2.6
2,802,068 - Psest_2619 0.32 +1.1
2,802,617 + Psest_2619 0.70 +0.9
2,802,617 + Psest_2619 0.70 +2.0
2,802,617 + Psest_2619 0.70 +2.2
2,802,618 - Psest_2619 0.70 -0.1
2,802,863 + Psest_2619 0.88 +2.3
2,802,863 + Psest_2619 0.88 +1.0
2,802,863 + Psest_2619 0.88 -0.4
2,802,864 - Psest_2619 0.88 -0.6
2,802,864 - Psest_2619 0.88 +1.7
2,802,864 - Psest_2619 0.88 +0.4
2,802,864 - Psest_2619 0.88 -0.9
2,803,207 - Psest_2620 0.15 +0.1
2,803,401 + Psest_2620 0.30 +1.9
2,803,401 + Psest_2620 0.30 +2.4
2,803,401 + Psest_2620 0.30 +1.2
2,803,401 + Psest_2620 0.30 +1.4
2,803,401 + Psest_2620 0.30 +0.0
2,803,401 + Psest_2620 0.30 +1.0
2,803,401 + Psest_2620 0.30 +1.4
2,803,401 + Psest_2620 0.30 +0.4
2,803,401 + Psest_2620 0.30 +0.4
2,803,402 - Psest_2620 0.30 -0.3
2,803,402 - Psest_2620 0.30 -0.9
2,803,402 - Psest_2620 0.30 +0.6
2,803,402 - Psest_2620 0.30 -0.3
2,803,402 - Psest_2620 0.30 -0.5
2,803,402 - Psest_2620 0.30 +1.7
2,803,402 - Psest_2620 0.30 -1.5
2,803,402 - Psest_2620 0.30 +0.6
2,803,402 - Psest_2620 0.30 -0.6
2,803,402 - Psest_2620 0.30 -0.3
2,803,402 - Psest_2620 0.30 -0.0
2,803,402 - Psest_2620 0.30 +0.3
2,803,402 - Psest_2620 0.30 -0.4
2,803,402 - Psest_2620 0.30 +0.3
2,803,402 - Psest_2620 0.30 -0.1
2,803,402 - Psest_2620 0.30 +0.3
2,803,402 - Psest_2620 0.30 -0.7
2,803,689 - Psest_2620 0.54 -0.5

Or see this region's nucleotide sequence