Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2617 and Psest_2618 are separated by 10 nucleotides Psest_2618 and Psest_2619 overlap by 4 nucleotides Psest_2619 and Psest_2620 overlap by 11 nucleotides
Psest_2617: Psest_2617 - Flp pilus assembly protein TadC, at 2,799,652 to 2,800,620
_2617
Psest_2618: Psest_2618 - Flp pilus assembly protein TadB, at 2,800,631 to 2,801,617
_2618
Psest_2619: Psest_2619 - Flp pilus assembly protein, ATPase CpaF, at 2,801,614 to 2,803,038
_2619
Psest_2620: Psest_2620 - Flp pilus assembly protein, ATPase CpaE, at 2,803,028 to 2,804,257
_2620
Position (kb)
2801
2802
2803
2804 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2800.614 kb on - strand at 2800.614 kb on - strand at 2800.743 kb on + strand, within Psest_2618 at 2800.744 kb on - strand, within Psest_2618 at 2800.838 kb on + strand, within Psest_2618 at 2801.013 kb on + strand, within Psest_2618 at 2801.084 kb on + strand, within Psest_2618 at 2801.084 kb on + strand, within Psest_2618 at 2801.329 kb on - strand, within Psest_2618 at 2801.421 kb on + strand, within Psest_2618 at 2801.422 kb on - strand, within Psest_2618 at 2801.422 kb on - strand, within Psest_2618 at 2801.595 kb on + strand at 2801.595 kb on + strand at 2801.595 kb on + strand at 2801.595 kb on + strand at 2801.596 kb on - strand at 2801.596 kb on - strand at 2801.724 kb on - strand at 2802.058 kb on + strand, within Psest_2619 at 2802.058 kb on + strand, within Psest_2619 at 2802.058 kb on + strand, within Psest_2619 at 2802.059 kb on - strand, within Psest_2619 at 2802.067 kb on - strand, within Psest_2619 at 2802.068 kb on - strand, within Psest_2619 at 2802.068 kb on - strand, within Psest_2619 at 2802.068 kb on - strand, within Psest_2619 at 2802.617 kb on + strand, within Psest_2619 at 2802.617 kb on + strand, within Psest_2619 at 2802.617 kb on + strand, within Psest_2619 at 2802.618 kb on - strand, within Psest_2619 at 2802.863 kb on + strand, within Psest_2619 at 2802.863 kb on + strand, within Psest_2619 at 2802.863 kb on + strand, within Psest_2619 at 2802.864 kb on - strand, within Psest_2619 at 2802.864 kb on - strand, within Psest_2619 at 2802.864 kb on - strand, within Psest_2619 at 2802.864 kb on - strand, within Psest_2619 at 2803.207 kb on - strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.689 kb on - strand, within Psest_2620
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 2,800,614 - -0.6 2,800,614 - +0.8 2,800,743 + Psest_2618 0.11 -1.4 2,800,744 - Psest_2618 0.11 -1.9 2,800,838 + Psest_2618 0.21 -0.6 2,801,013 + Psest_2618 0.39 -2.0 2,801,084 + Psest_2618 0.46 +0.9 2,801,084 + Psest_2618 0.46 +0.3 2,801,329 - Psest_2618 0.71 -0.9 2,801,421 + Psest_2618 0.80 -0.4 2,801,422 - Psest_2618 0.80 -0.2 2,801,422 - Psest_2618 0.80 +0.6 2,801,595 + -0.0 2,801,595 + +1.0 2,801,595 + +0.2 2,801,595 + -0.1 2,801,596 - -2.3 2,801,596 - +1.4 2,801,724 - -1.3 2,802,058 + Psest_2619 0.31 +0.6 2,802,058 + Psest_2619 0.31 +0.0 2,802,058 + Psest_2619 0.31 -1.1 2,802,059 - Psest_2619 0.31 +0.4 2,802,067 - Psest_2619 0.32 +0.0 2,802,068 - Psest_2619 0.32 +0.2 2,802,068 - Psest_2619 0.32 +2.6 2,802,068 - Psest_2619 0.32 +1.1 2,802,617 + Psest_2619 0.70 +0.9 2,802,617 + Psest_2619 0.70 +2.0 2,802,617 + Psest_2619 0.70 +2.2 2,802,618 - Psest_2619 0.70 -0.1 2,802,863 + Psest_2619 0.88 +2.3 2,802,863 + Psest_2619 0.88 +1.0 2,802,863 + Psest_2619 0.88 -0.4 2,802,864 - Psest_2619 0.88 -0.6 2,802,864 - Psest_2619 0.88 +1.7 2,802,864 - Psest_2619 0.88 +0.4 2,802,864 - Psest_2619 0.88 -0.9 2,803,207 - Psest_2620 0.15 +0.1 2,803,401 + Psest_2620 0.30 +1.9 2,803,401 + Psest_2620 0.30 +2.4 2,803,401 + Psest_2620 0.30 +1.2 2,803,401 + Psest_2620 0.30 +1.4 2,803,401 + Psest_2620 0.30 +0.0 2,803,401 + Psest_2620 0.30 +1.0 2,803,401 + Psest_2620 0.30 +1.4 2,803,401 + Psest_2620 0.30 +0.4 2,803,401 + Psest_2620 0.30 +0.4 2,803,402 - Psest_2620 0.30 -0.3 2,803,402 - Psest_2620 0.30 -0.9 2,803,402 - Psest_2620 0.30 +0.6 2,803,402 - Psest_2620 0.30 -0.3 2,803,402 - Psest_2620 0.30 -0.5 2,803,402 - Psest_2620 0.30 +1.7 2,803,402 - Psest_2620 0.30 -1.5 2,803,402 - Psest_2620 0.30 +0.6 2,803,402 - Psest_2620 0.30 -0.6 2,803,402 - Psest_2620 0.30 -0.3 2,803,402 - Psest_2620 0.30 -0.0 2,803,402 - Psest_2620 0.30 +0.3 2,803,402 - Psest_2620 0.30 -0.4 2,803,402 - Psest_2620 0.30 +0.3 2,803,402 - Psest_2620 0.30 -0.1 2,803,402 - Psest_2620 0.30 +0.3 2,803,402 - Psest_2620 0.30 -0.7 2,803,689 - Psest_2620 0.54 -0.5
Or see this region's nucleotide sequence