Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2127

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2126 and Psest_2127 are separated by 24 nucleotidesPsest_2127 and Psest_2128 are separated by 146 nucleotides Psest_2126: Psest_2126 - Transcriptional regulators, at 2,257,670 to 2,258,689 _2126 Psest_2127: Psest_2127 - Transcriptional regulator, at 2,258,714 to 2,259,625 _2127 Psest_2128: Psest_2128 - Acyl-CoA dehydrogenases, at 2,259,772 to 2,260,998 _2128 Position (kb) 2258 2259 2260Strain fitness (log2 ratio) -2 -1 0 1 2at 2257.994 kb on + strand, within Psest_2126at 2258.108 kb on + strand, within Psest_2126at 2258.108 kb on + strand, within Psest_2126at 2258.108 kb on + strand, within Psest_2126at 2258.108 kb on + strand, within Psest_2126at 2258.109 kb on - strand, within Psest_2126at 2258.159 kb on + strand, within Psest_2126at 2258.160 kb on - strand, within Psest_2126at 2258.160 kb on - strand, within Psest_2126at 2258.319 kb on - strand, within Psest_2126at 2258.488 kb on - strand, within Psest_2126at 2258.488 kb on - strand, within Psest_2126at 2258.811 kb on + strand, within Psest_2127at 2258.811 kb on + strand, within Psest_2127at 2258.811 kb on + strand, within Psest_2127at 2258.811 kb on + strand, within Psest_2127at 2258.812 kb on - strand, within Psest_2127at 2258.812 kb on - strand, within Psest_2127at 2258.812 kb on - strand, within Psest_2127at 2258.812 kb on - strand, within Psest_2127at 2258.812 kb on - strand, within Psest_2127at 2258.812 kb on - strand, within Psest_2127at 2258.941 kb on - strand, within Psest_2127at 2258.941 kb on - strand, within Psest_2127at 2258.941 kb on - strand, within Psest_2127at 2258.941 kb on - strand, within Psest_2127at 2259.031 kb on + strand, within Psest_2127at 2259.031 kb on + strand, within Psest_2127at 2259.031 kb on + strand, within Psest_2127at 2259.031 kb on + strand, within Psest_2127at 2259.032 kb on - strand, within Psest_2127at 2259.032 kb on - strand, within Psest_2127at 2259.114 kb on + strand, within Psest_2127at 2259.403 kb on + strand, within Psest_2127at 2259.404 kb on - strand, within Psest_2127at 2259.573 kb on + strandat 2259.573 kb on + strandat 2259.573 kb on + strandat 2259.573 kb on + strandat 2259.573 kb on + strandat 2259.574 kb on - strandat 2259.574 kb on - strandat 2259.574 kb on - strandat 2259.596 kb on + strandat 2259.596 kb on + strandat 2259.596 kb on + strandat 2259.664 kb on + strandat 2259.665 kb on - strandat 2259.665 kb on - strandat 2259.665 kb on - strandat 2259.685 kb on + strandat 2259.686 kb on - strandat 2259.686 kb on - strandat 2259.704 kb on - strandat 2259.704 kb on - strandat 2259.726 kb on + strandat 2259.726 kb on + strandat 2259.727 kb on - strandat 2259.749 kb on + strandat 2259.750 kb on - strandat 2259.844 kb on + strandat 2260.004 kb on - strand, within Psest_2128at 2260.207 kb on - strand, within Psest_2128

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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2,257,994 + Psest_2126 0.32 +0.3
2,258,108 + Psest_2126 0.43 -2.6
2,258,108 + Psest_2126 0.43 +0.4
2,258,108 + Psest_2126 0.43 -0.3
2,258,108 + Psest_2126 0.43 +0.5
2,258,109 - Psest_2126 0.43 -1.5
2,258,159 + Psest_2126 0.48 +0.4
2,258,160 - Psest_2126 0.48 -0.1
2,258,160 - Psest_2126 0.48 +0.7
2,258,319 - Psest_2126 0.64 -0.3
2,258,488 - Psest_2126 0.80 +0.3
2,258,488 - Psest_2126 0.80 +1.8
2,258,811 + Psest_2127 0.11 +1.0
2,258,811 + Psest_2127 0.11 +0.5
2,258,811 + Psest_2127 0.11 -1.8
2,258,811 + Psest_2127 0.11 +0.3
2,258,812 - Psest_2127 0.11 +0.8
2,258,812 - Psest_2127 0.11 +1.8
2,258,812 - Psest_2127 0.11 +1.6
2,258,812 - Psest_2127 0.11 +1.7
2,258,812 - Psest_2127 0.11 +0.9
2,258,812 - Psest_2127 0.11 +1.2
2,258,941 - Psest_2127 0.25 -2.3
2,258,941 - Psest_2127 0.25 -0.4
2,258,941 - Psest_2127 0.25 +0.3
2,258,941 - Psest_2127 0.25 +1.4
2,259,031 + Psest_2127 0.35 +0.0
2,259,031 + Psest_2127 0.35 -0.8
2,259,031 + Psest_2127 0.35 -1.2
2,259,031 + Psest_2127 0.35 -0.8
2,259,032 - Psest_2127 0.35 -0.8
2,259,032 - Psest_2127 0.35 +1.8
2,259,114 + Psest_2127 0.44 +1.2
2,259,403 + Psest_2127 0.76 +0.1
2,259,404 - Psest_2127 0.76 +0.1
2,259,573 + -0.6
2,259,573 + -0.6
2,259,573 + -1.5
2,259,573 + -0.6
2,259,573 + +0.5
2,259,574 - +1.2
2,259,574 - +0.3
2,259,574 - +0.5
2,259,596 + -1.1
2,259,596 + -2.5
2,259,596 + -2.1
2,259,664 + -0.9
2,259,665 - +0.2
2,259,665 - +0.5
2,259,665 - -1.1
2,259,685 + -0.6
2,259,686 - -0.8
2,259,686 - +0.3
2,259,704 - -0.3
2,259,704 - -0.1
2,259,726 + -1.3
2,259,726 + -0.9
2,259,727 - +0.5
2,259,749 + +0.1
2,259,750 - +0.1
2,259,844 + +0.3
2,260,004 - Psest_2128 0.19 +0.3
2,260,207 - Psest_2128 0.35 +0.6

Or see this region's nucleotide sequence