Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0019 and Psest_0020 are separated by 330 nucleotides Psest_0020 and Psest_0021 are separated by 74 nucleotides
Psest_0019: Psest_0019 - ectoine/hydroxyectoine ABC transporter solute-binding protein, at 19,067 to 19,924
_0019
Psest_0020: Psest_0020 - K+ transport systems, NAD-binding component, at 20,255 to 21,628
_0020
Psest_0021: Psest_0021 - ribosomal RNA small subunit methyltransferase RsmB, at 21,703 to 23,025
_0021
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 19.494 kb on + strand, within Psest_0019 at 19.494 kb on + strand, within Psest_0019 at 19.495 kb on - strand, within Psest_0019 at 19.571 kb on + strand, within Psest_0019 at 19.571 kb on + strand, within Psest_0019 at 19.571 kb on + strand, within Psest_0019 at 19.571 kb on + strand, within Psest_0019 at 19.572 kb on - strand, within Psest_0019 at 19.572 kb on - strand, within Psest_0019 at 19.572 kb on - strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.599 kb on + strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.600 kb on - strand, within Psest_0019 at 19.715 kb on + strand, within Psest_0019 at 19.715 kb on + strand, within Psest_0019 at 19.715 kb on + strand, within Psest_0019 at 19.761 kb on + strand, within Psest_0019 at 19.946 kb on + strand at 19.947 kb on - strand at 19.947 kb on - strand at 19.947 kb on - strand at 19.971 kb on - strand at 20.031 kb on - strand at 20.451 kb on - strand, within Psest_0020 at 20.765 kb on + strand, within Psest_0020 at 20.766 kb on - strand, within Psest_0020 at 20.937 kb on + strand, within Psest_0020 at 20.937 kb on + strand, within Psest_0020 at 20.937 kb on + strand, within Psest_0020 at 20.937 kb on + strand, within Psest_0020 at 20.937 kb on + strand, within Psest_0020 at 20.937 kb on + strand, within Psest_0020 at 20.937 kb on + strand, within Psest_0020 at 20.938 kb on - strand, within Psest_0020 at 21.110 kb on + strand, within Psest_0020 at 21.150 kb on + strand, within Psest_0020 at 21.150 kb on + strand, within Psest_0020 at 21.237 kb on + strand, within Psest_0020 at 21.237 kb on + strand, within Psest_0020 at 21.237 kb on + strand, within Psest_0020 at 21.237 kb on + strand, within Psest_0020 at 21.318 kb on + strand, within Psest_0020 at 21.319 kb on - strand, within Psest_0020 at 21.355 kb on + strand, within Psest_0020 at 21.705 kb on - strand at 21.752 kb on + strand at 21.753 kb on - strand at 21.753 kb on - strand at 21.753 kb on - strand at 21.753 kb on - strand at 21.753 kb on - strand at 21.755 kb on + strand at 21.755 kb on + strand at 21.755 kb on + strand at 21.755 kb on + strand at 21.755 kb on + strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.756 kb on - strand at 21.917 kb on + strand, within Psest_0021 at 21.918 kb on - strand, within Psest_0021 at 21.918 kb on - strand, within Psest_0021 at 22.147 kb on + strand, within Psest_0021 at 22.148 kb on - strand, within Psest_0021 at 22.148 kb on - strand, within Psest_0021 at 22.148 kb on - strand, within Psest_0021 at 22.148 kb on - strand, within Psest_0021 at 22.148 kb on - strand, within Psest_0021 at 22.148 kb on - strand, within Psest_0021 at 22.473 kb on - strand, within Psest_0021
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 19,494 + Psest_0019 0.50 +0.4 19,494 + Psest_0019 0.50 -2.7 19,495 - Psest_0019 0.50 +0.5 19,571 + Psest_0019 0.59 +0.7 19,571 + Psest_0019 0.59 +0.6 19,571 + Psest_0019 0.59 -0.6 19,571 + Psest_0019 0.59 +0.7 19,572 - Psest_0019 0.59 -1.6 19,572 - Psest_0019 0.59 +0.1 19,572 - Psest_0019 0.59 -0.1 19,599 + Psest_0019 0.62 +1.3 19,599 + Psest_0019 0.62 +0.2 19,599 + Psest_0019 0.62 +1.5 19,599 + Psest_0019 0.62 +0.7 19,599 + Psest_0019 0.62 +1.0 19,599 + Psest_0019 0.62 +0.6 19,599 + Psest_0019 0.62 -1.2 19,599 + Psest_0019 0.62 +0.0 19,599 + Psest_0019 0.62 -0.4 19,599 + Psest_0019 0.62 -1.8 19,599 + Psest_0019 0.62 -0.4 19,599 + Psest_0019 0.62 +0.3 19,600 - Psest_0019 0.62 -2.0 19,600 - Psest_0019 0.62 -0.7 19,600 - Psest_0019 0.62 -0.5 19,600 - Psest_0019 0.62 +0.4 19,600 - Psest_0019 0.62 -1.9 19,600 - Psest_0019 0.62 +0.0 19,600 - Psest_0019 0.62 -1.2 19,600 - Psest_0019 0.62 +0.1 19,600 - Psest_0019 0.62 +1.0 19,600 - Psest_0019 0.62 -0.6 19,600 - Psest_0019 0.62 -0.3 19,600 - Psest_0019 0.62 -0.0 19,600 - Psest_0019 0.62 +1.5 19,600 - Psest_0019 0.62 -0.2 19,600 - Psest_0019 0.62 -0.2 19,600 - Psest_0019 0.62 -1.0 19,600 - Psest_0019 0.62 +0.4 19,600 - Psest_0019 0.62 +0.4 19,600 - Psest_0019 0.62 -0.6 19,600 - Psest_0019 0.62 -0.6 19,600 - Psest_0019 0.62 +0.2 19,600 - Psest_0019 0.62 -1.0 19,600 - Psest_0019 0.62 +1.0 19,600 - Psest_0019 0.62 -2.8 19,600 - Psest_0019 0.62 -1.0 19,600 - Psest_0019 0.62 -0.6 19,600 - Psest_0019 0.62 +0.4 19,600 - Psest_0019 0.62 -1.4 19,600 - Psest_0019 0.62 -1.0 19,600 - Psest_0019 0.62 +0.1 19,600 - Psest_0019 0.62 -0.8 19,600 - Psest_0019 0.62 -0.7 19,600 - Psest_0019 0.62 -0.3 19,715 + Psest_0019 0.76 +0.4 19,715 + Psest_0019 0.76 +0.1 19,715 + Psest_0019 0.76 +0.2 19,761 + Psest_0019 0.81 +0.6 19,946 + +1.0 19,947 - +0.0 19,947 - +1.0 19,947 - -0.1 19,971 - +0.4 20,031 - -1.2 20,451 - Psest_0020 0.14 -2.3 20,765 + Psest_0020 0.37 -1.3 20,766 - Psest_0020 0.37 -1.0 20,937 + Psest_0020 0.50 -1.3 20,937 + Psest_0020 0.50 -0.6 20,937 + Psest_0020 0.50 -2.1 20,937 + Psest_0020 0.50 +0.8 20,937 + Psest_0020 0.50 +0.0 20,937 + Psest_0020 0.50 +1.4 20,937 + Psest_0020 0.50 +0.7 20,938 - Psest_0020 0.50 -3.1 21,110 + Psest_0020 0.62 -1.6 21,150 + Psest_0020 0.65 +0.5 21,150 + Psest_0020 0.65 +0.6 21,237 + Psest_0020 0.71 -1.1 21,237 + Psest_0020 0.71 -0.4 21,237 + Psest_0020 0.71 +0.8 21,237 + Psest_0020 0.71 +0.4 21,318 + Psest_0020 0.77 -1.0 21,319 - Psest_0020 0.77 -2.3 21,355 + Psest_0020 0.80 +1.4 21,705 - +0.3 21,752 + -1.7 21,753 - -1.0 21,753 - -1.8 21,753 - +1.0 21,753 - -2.5 21,753 - -2.7 21,755 + +1.0 21,755 + +0.0 21,755 + -1.1 21,755 + -0.6 21,755 + +1.4 21,756 - -3.3 21,756 - -1.4 21,756 - +0.0 21,756 - -1.3 21,756 - -1.6 21,756 - -0.3 21,756 - -1.0 21,756 - -1.8 21,756 - -2.1 21,756 - +0.0 21,756 - -2.1 21,756 - -2.3 21,756 - -0.8 21,756 - -3.4 21,917 + Psest_0021 0.16 -1.3 21,918 - Psest_0021 0.16 -2.6 21,918 - Psest_0021 0.16 -3.2 22,147 + Psest_0021 0.34 -0.6 22,148 - Psest_0021 0.34 -3.0 22,148 - Psest_0021 0.34 -0.4 22,148 - Psest_0021 0.34 -2.1 22,148 - Psest_0021 0.34 -0.9 22,148 - Psest_0021 0.34 -1.6 22,148 - Psest_0021 0.34 -0.7 22,473 - Psest_0021 0.58 -2.8
Or see this region's nucleotide sequence