Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1726

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1725 and Psest_1726 are separated by 28 nucleotidesPsest_1726 and Psest_1727 are separated by 166 nucleotides Psest_1725: Psest_1725 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,830,984 to 1,832,675 _1725 Psest_1726: Psest_1726 - Chemotaxis protein histidine kinase and related kinases, at 1,832,704 to 1,833,054 _1726 Psest_1727: Psest_1727 - Flagellar hook-length control protein, at 1,833,221 to 1,834,462 _1727 Position (kb) 1832 1833 1834Strain fitness (log2 ratio) -1 0 1 2 3at 1831.810 kb on - strand, within Psest_1725at 1831.810 kb on - strand, within Psest_1725at 1831.816 kb on + strand, within Psest_1725at 1831.817 kb on - strand, within Psest_1725at 1831.817 kb on - strand, within Psest_1725at 1831.817 kb on - strand, within Psest_1725at 1831.936 kb on + strand, within Psest_1725at 1831.936 kb on + strand, within Psest_1725at 1831.936 kb on + strand, within Psest_1725at 1831.937 kb on - strand, within Psest_1725at 1831.937 kb on - strand, within Psest_1725at 1831.937 kb on - strand, within Psest_1725at 1831.937 kb on - strand, within Psest_1725at 1832.100 kb on - strand, within Psest_1725at 1832.301 kb on + strand, within Psest_1725at 1832.301 kb on + strand, within Psest_1725at 1832.301 kb on + strand, within Psest_1725at 1832.322 kb on + strand, within Psest_1725at 1832.323 kb on - strand, within Psest_1725at 1832.323 kb on - strand, within Psest_1725at 1832.323 kb on - strand, within Psest_1725at 1832.323 kb on - strand, within Psest_1725at 1832.397 kb on + strand, within Psest_1725at 1832.400 kb on + strand, within Psest_1725at 1832.400 kb on + strand, within Psest_1725at 1832.400 kb on + strand, within Psest_1725at 1832.400 kb on + strand, within Psest_1725at 1832.400 kb on + strand, within Psest_1725at 1832.401 kb on - strand, within Psest_1725at 1832.401 kb on - strand, within Psest_1725at 1832.401 kb on - strand, within Psest_1725at 1832.401 kb on - strand, within Psest_1725at 1832.401 kb on - strand, within Psest_1725at 1832.401 kb on - strand, within Psest_1725at 1832.442 kb on + strand, within Psest_1725at 1832.442 kb on + strand, within Psest_1725at 1832.442 kb on + strand, within Psest_1725at 1832.442 kb on + strand, within Psest_1725at 1832.443 kb on - strand, within Psest_1725at 1832.673 kb on + strandat 1832.673 kb on + strandat 1833.079 kb on - strandat 1833.126 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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1,831,810 - Psest_1725 0.49 +2.9
1,831,810 - Psest_1725 0.49 +2.0
1,831,816 + Psest_1725 0.49 +3.0
1,831,817 - Psest_1725 0.49 +1.9
1,831,817 - Psest_1725 0.49 +2.3
1,831,817 - Psest_1725 0.49 +2.2
1,831,936 + Psest_1725 0.56 +2.7
1,831,936 + Psest_1725 0.56 +0.8
1,831,936 + Psest_1725 0.56 -1.6
1,831,937 - Psest_1725 0.56 +2.4
1,831,937 - Psest_1725 0.56 +2.3
1,831,937 - Psest_1725 0.56 +2.0
1,831,937 - Psest_1725 0.56 +2.1
1,832,100 - Psest_1725 0.66 +2.3
1,832,301 + Psest_1725 0.78 +2.4
1,832,301 + Psest_1725 0.78 +2.9
1,832,301 + Psest_1725 0.78 +2.4
1,832,322 + Psest_1725 0.79 +2.0
1,832,323 - Psest_1725 0.79 +2.4
1,832,323 - Psest_1725 0.79 +2.2
1,832,323 - Psest_1725 0.79 +2.0
1,832,323 - Psest_1725 0.79 +2.1
1,832,397 + Psest_1725 0.84 +2.5
1,832,400 + Psest_1725 0.84 +1.5
1,832,400 + Psest_1725 0.84 +2.0
1,832,400 + Psest_1725 0.84 +2.0
1,832,400 + Psest_1725 0.84 +3.4
1,832,400 + Psest_1725 0.84 +2.4
1,832,401 - Psest_1725 0.84 +2.2
1,832,401 - Psest_1725 0.84 +2.3
1,832,401 - Psest_1725 0.84 +2.7
1,832,401 - Psest_1725 0.84 +2.1
1,832,401 - Psest_1725 0.84 +1.9
1,832,401 - Psest_1725 0.84 +2.4
1,832,442 + Psest_1725 0.86 +2.6
1,832,442 + Psest_1725 0.86 +3.1
1,832,442 + Psest_1725 0.86 +2.3
1,832,442 + Psest_1725 0.86 +2.4
1,832,443 - Psest_1725 0.86 +2.1
1,832,673 + -0.0
1,832,673 + -0.6
1,833,079 - +1.3
1,833,126 + -0.6

Or see this region's nucleotide sequence