Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16990 and PGA1_c17000 are separated by 187 nucleotides PGA1_c17000 and PGA1_c17010 overlap by 4 nucleotides PGA1_c17010 and PGA1_c17020 are separated by 106 nucleotides PGA1_c17020 and PGA1_c17030 overlap by 10 nucleotides
PGA1_c16990: PGA1_c16990 - putative enoyl-CoA hydratase FadB, at 1,775,266 to 1,776,042
_c16990
PGA1_c17000: PGA1_c17000 - cytochrome c-type biogenesis protein Ccl, at 1,776,230 to 1,776,724
_c17000
PGA1_c17010: PGA1_c17010 - cytochrome c-type biogenesis protein CcmF, at 1,776,721 to 1,778,685
_c17010
PGA1_c17020: PGA1_c17020 - Protein of unknown function (DUF3154)., at 1,778,792 to 1,779,403
_c17020
PGA1_c17030: PGA1_c17030 - peptidoglycan binding domain-containing protein, at 1,779,394 to 1,780,005
_c17030
Position (kb)
1776
1777
1778
1779 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1775.754 kb on + strand, within PGA1_c16990 at 1775.764 kb on + strand, within PGA1_c16990 at 1775.772 kb on - strand, within PGA1_c16990 at 1775.797 kb on + strand, within PGA1_c16990 at 1775.851 kb on + strand, within PGA1_c16990 at 1775.864 kb on - strand, within PGA1_c16990 at 1775.866 kb on + strand, within PGA1_c16990 at 1775.955 kb on - strand, within PGA1_c16990 at 1776.056 kb on - strand at 1776.125 kb on - strand at 1776.125 kb on - strand at 1776.125 kb on - strand at 1776.173 kb on + strand at 1776.181 kb on - strand at 1776.212 kb on + strand at 1778.796 kb on - strand at 1778.802 kb on + strand at 1778.802 kb on + strand at 1778.812 kb on + strand at 1778.830 kb on + strand at 1778.859 kb on + strand, within PGA1_c17020 at 1778.898 kb on - strand, within PGA1_c17020 at 1778.916 kb on - strand, within PGA1_c17020 at 1778.969 kb on - strand, within PGA1_c17020 at 1779.232 kb on - strand, within PGA1_c17020 at 1779.263 kb on - strand, within PGA1_c17020 at 1779.339 kb on - strand, within PGA1_c17020 at 1779.346 kb on - strand at 1779.387 kb on + strand at 1779.388 kb on - strand at 1779.450 kb on - strand at 1779.596 kb on - strand, within PGA1_c17030
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 1,775,754 + PGA1_c16990 0.63 -0.0 1,775,764 + PGA1_c16990 0.64 -0.1 1,775,772 - PGA1_c16990 0.65 -1.2 1,775,797 + PGA1_c16990 0.68 -0.9 1,775,851 + PGA1_c16990 0.75 -1.2 1,775,864 - PGA1_c16990 0.77 +1.9 1,775,866 + PGA1_c16990 0.77 -1.5 1,775,955 - PGA1_c16990 0.89 -1.7 1,776,056 - +1.7 1,776,125 - +0.5 1,776,125 - -0.7 1,776,125 - +1.1 1,776,173 + +1.1 1,776,181 - -0.2 1,776,212 + +0.4 1,778,796 - -0.7 1,778,802 + +0.5 1,778,802 + +0.2 1,778,812 + +1.0 1,778,830 + +0.2 1,778,859 + PGA1_c17020 0.11 -0.6 1,778,898 - PGA1_c17020 0.17 +0.7 1,778,916 - PGA1_c17020 0.20 -1.0 1,778,969 - PGA1_c17020 0.29 +0.2 1,779,232 - PGA1_c17020 0.72 +0.6 1,779,263 - PGA1_c17020 0.77 -2.4 1,779,339 - PGA1_c17020 0.89 +0.9 1,779,346 - +1.7 1,779,387 + -1.5 1,779,388 - +0.2 1,779,450 - +0.9 1,779,596 - PGA1_c17030 0.33 +1.6
Or see this region's nucleotide sequence