Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1245

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1244 and Psest_1245 are separated by 12 nucleotidesPsest_1245 and Psest_1246 are separated by 77 nucleotidesPsest_1246 and Psest_1247 are separated by 59 nucleotides Psest_1244: Psest_1244 - protein-export membrane protein, SecD/SecF family, at 1,351,653 to 1,353,521 _1244 Psest_1245: Psest_1245 - protein-export membrane protein, SecD/SecF family, at 1,353,534 to 1,354,445 _1245 Psest_1246: Psest_1246 - Predicted outer membrane lipoprotein, at 1,354,523 to 1,355,056 _1246 Psest_1247: Psest_1247 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 1,355,116 to 1,355,931 _1247 Position (kb) 1353 1354 1355Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1353.519 kb on + strandat 1354.417 kb on + strandat 1354.417 kb on + strandat 1354.417 kb on + strandat 1354.417 kb on + strandat 1354.591 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.595 kb on + strand, within Psest_1246at 1354.596 kb on - strand, within Psest_1246at 1354.596 kb on - strand, within Psest_1246at 1354.596 kb on - strand, within Psest_1246at 1354.596 kb on - strand, within Psest_1246at 1354.596 kb on - strand, within Psest_1246at 1354.596 kb on - strand, within Psest_1246at 1354.596 kb on - strand, within Psest_1246at 1354.596 kb on - strand, within Psest_1246at 1354.596 kb on - strand, within Psest_1246at 1354.596 kb on - strand, within Psest_1246at 1354.596 kb on - strand, within Psest_1246at 1354.596 kb on - strand, within Psest_1246at 1354.597 kb on + strand, within Psest_1246at 1354.597 kb on + strand, within Psest_1246at 1354.598 kb on - strand, within Psest_1246at 1354.750 kb on - strand, within Psest_1246at 1354.882 kb on + strand, within Psest_1246at 1354.882 kb on + strand, within Psest_1246at 1354.882 kb on + strand, within Psest_1246at 1354.882 kb on + strand, within Psest_1246at 1354.882 kb on + strand, within Psest_1246at 1354.882 kb on + strand, within Psest_1246at 1354.882 kb on + strand, within Psest_1246at 1354.883 kb on - strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.886 kb on + strand, within Psest_1246at 1354.887 kb on - strand, within Psest_1246at 1354.887 kb on - strand, within Psest_1246at 1354.887 kb on - strand, within Psest_1246at 1354.887 kb on - strand, within Psest_1246at 1354.887 kb on - strand, within Psest_1246at 1354.887 kb on - strand, within Psest_1246at 1354.887 kb on - strand, within Psest_1246at 1354.887 kb on - strand, within Psest_1246at 1354.888 kb on + strand, within Psest_1246at 1354.889 kb on - strand, within Psest_1246at 1354.958 kb on + strand, within Psest_1246at 1354.958 kb on + strand, within Psest_1246at 1354.958 kb on + strand, within Psest_1246at 1354.959 kb on - strand, within Psest_1246at 1354.959 kb on - strand, within Psest_1246at 1354.959 kb on - strand, within Psest_1246at 1354.986 kb on + strand, within Psest_1246at 1354.987 kb on - strand, within Psest_1246at 1354.987 kb on - strand, within Psest_1246at 1355.038 kb on - strandat 1355.038 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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1,353,519 + -0.2
1,354,417 + +2.4
1,354,417 + +1.1
1,354,417 + +1.9
1,354,417 + +1.6
1,354,591 + Psest_1246 0.13 -0.5
1,354,595 + Psest_1246 0.13 +0.7
1,354,595 + Psest_1246 0.13 +1.5
1,354,595 + Psest_1246 0.13 +0.3
1,354,595 + Psest_1246 0.13 +0.9
1,354,595 + Psest_1246 0.13 +1.0
1,354,595 + Psest_1246 0.13 +0.8
1,354,595 + Psest_1246 0.13 +1.3
1,354,595 + Psest_1246 0.13 +0.6
1,354,595 + Psest_1246 0.13 +0.4
1,354,595 + Psest_1246 0.13 +1.6
1,354,595 + Psest_1246 0.13 +0.9
1,354,595 + Psest_1246 0.13 -0.8
1,354,595 + Psest_1246 0.13 +0.0
1,354,595 + Psest_1246 0.13 -0.1
1,354,595 + Psest_1246 0.13 -0.9
1,354,595 + Psest_1246 0.13 -0.6
1,354,595 + Psest_1246 0.13 -1.0
1,354,595 + Psest_1246 0.13 +0.4
1,354,596 - Psest_1246 0.14 -1.6
1,354,596 - Psest_1246 0.14 -4.0
1,354,596 - Psest_1246 0.14 -1.6
1,354,596 - Psest_1246 0.14 -2.6
1,354,596 - Psest_1246 0.14 -0.2
1,354,596 - Psest_1246 0.14 -1.4
1,354,596 - Psest_1246 0.14 -0.8
1,354,596 - Psest_1246 0.14 -0.6
1,354,596 - Psest_1246 0.14 -3.6
1,354,596 - Psest_1246 0.14 -1.2
1,354,596 - Psest_1246 0.14 -1.4
1,354,596 - Psest_1246 0.14 -1.0
1,354,597 + Psest_1246 0.14 +0.2
1,354,597 + Psest_1246 0.14 -0.9
1,354,598 - Psest_1246 0.14 -2.3
1,354,750 - Psest_1246 0.43 -0.9
1,354,882 + Psest_1246 0.67 +1.8
1,354,882 + Psest_1246 0.67 +0.6
1,354,882 + Psest_1246 0.67 +0.6
1,354,882 + Psest_1246 0.67 -0.5
1,354,882 + Psest_1246 0.67 +0.3
1,354,882 + Psest_1246 0.67 -0.7
1,354,882 + Psest_1246 0.67 +1.2
1,354,883 - Psest_1246 0.67 -1.3
1,354,886 + Psest_1246 0.68 -0.7
1,354,886 + Psest_1246 0.68 +0.8
1,354,886 + Psest_1246 0.68 -0.6
1,354,886 + Psest_1246 0.68 +0.9
1,354,886 + Psest_1246 0.68 +0.5
1,354,886 + Psest_1246 0.68 +0.8
1,354,886 + Psest_1246 0.68 +0.3
1,354,886 + Psest_1246 0.68 +0.1
1,354,886 + Psest_1246 0.68 +0.5
1,354,886 + Psest_1246 0.68 +0.1
1,354,886 + Psest_1246 0.68 +0.5
1,354,886 + Psest_1246 0.68 +0.6
1,354,886 + Psest_1246 0.68 +0.3
1,354,886 + Psest_1246 0.68 +0.6
1,354,886 + Psest_1246 0.68 +0.1
1,354,886 + Psest_1246 0.68 +1.4
1,354,886 + Psest_1246 0.68 +0.2
1,354,886 + Psest_1246 0.68 +0.4
1,354,886 + Psest_1246 0.68 +1.7
1,354,886 + Psest_1246 0.68 +0.3
1,354,886 + Psest_1246 0.68 +1.0
1,354,886 + Psest_1246 0.68 +0.8
1,354,886 + Psest_1246 0.68 +0.5
1,354,886 + Psest_1246 0.68 +0.4
1,354,886 + Psest_1246 0.68 -0.9
1,354,886 + Psest_1246 0.68 +0.9
1,354,886 + Psest_1246 0.68 +0.4
1,354,886 + Psest_1246 0.68 -0.1
1,354,886 + Psest_1246 0.68 +0.5
1,354,887 - Psest_1246 0.68 -0.6
1,354,887 - Psest_1246 0.68 -0.5
1,354,887 - Psest_1246 0.68 -1.0
1,354,887 - Psest_1246 0.68 -0.7
1,354,887 - Psest_1246 0.68 -2.1
1,354,887 - Psest_1246 0.68 -0.4
1,354,887 - Psest_1246 0.68 -4.1
1,354,887 - Psest_1246 0.68 -1.0
1,354,888 + Psest_1246 0.68 +2.1
1,354,889 - Psest_1246 0.69 -0.7
1,354,958 + Psest_1246 0.81 -0.3
1,354,958 + Psest_1246 0.81 +1.6
1,354,958 + Psest_1246 0.81 +1.8
1,354,959 - Psest_1246 0.82 -0.3
1,354,959 - Psest_1246 0.82 -2.1
1,354,959 - Psest_1246 0.82 -1.5
1,354,986 + Psest_1246 0.87 -1.2
1,354,987 - Psest_1246 0.87 -1.4
1,354,987 - Psest_1246 0.87 -2.6
1,355,038 - -2.1
1,355,038 - -1.7

Or see this region's nucleotide sequence