Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1244

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1242 and Psest_1243 are separated by 42 nucleotidesPsest_1243 and Psest_1244 are separated by 64 nucleotidesPsest_1244 and Psest_1245 are separated by 12 nucleotides Psest_1242: Psest_1242 - tRNA-guanine transglycosylase, queuosine-34-forming, at 1,350,083 to 1,351,216 _1242 Psest_1243: Psest_1243 - preprotein translocase, YajC subunit, at 1,351,259 to 1,351,588 _1243 Psest_1244: Psest_1244 - protein-export membrane protein, SecD/SecF family, at 1,351,653 to 1,353,521 _1244 Psest_1245: Psest_1245 - protein-export membrane protein, SecD/SecF family, at 1,353,534 to 1,354,445 _1245 Position (kb) 1351 1352 1353 1354Strain fitness (log2 ratio) -2 -1 0 1 2at 1350.661 kb on + strand, within Psest_1242at 1351.089 kb on + strand, within Psest_1242at 1351.089 kb on + strand, within Psest_1242at 1351.089 kb on + strand, within Psest_1242at 1351.093 kb on + strand, within Psest_1242at 1351.150 kb on + strandat 1351.150 kb on + strandat 1351.178 kb on + strandat 1351.638 kb on + strandat 1353.519 kb on + strandat 1354.417 kb on + strandat 1354.417 kb on + strandat 1354.417 kb on + strandat 1354.417 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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1,350,661 + Psest_1242 0.51 -2.1
1,351,089 + Psest_1242 0.89 -1.2
1,351,089 + Psest_1242 0.89 -1.2
1,351,089 + Psest_1242 0.89 -2.5
1,351,093 + Psest_1242 0.89 -1.2
1,351,150 + -1.4
1,351,150 + -2.4
1,351,178 + -0.5
1,351,638 + -0.2
1,353,519 + -0.2
1,354,417 + +2.4
1,354,417 + +1.1
1,354,417 + +1.9
1,354,417 + +1.6

Or see this region's nucleotide sequence