Strain Fitness in Shewanella amazonensis SB2B around Sama_3610

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
4,248,631	+		Sama_3609	0.66	-0.7
4,248,685	+		Sama_3609	0.68	-1.7
4,248,692	+		Sama_3609	0.68	+0.9
4,248,692	+		Sama_3609	0.68	-1.4
4,248,692	+		Sama_3609	0.68	+0.4
4,248,693	-		Sama_3609	0.68	+0.1
4,248,693	-		Sama_3609	0.68	-0.2
4,248,693	-		Sama_3609	0.68	-0.2
4,248,707	-		Sama_3609	0.69	-0.0
4,248,756	+		Sama_3609	0.70	-0.3
4,248,757	-		Sama_3609	0.70	-2.4
4,248,760	+		Sama_3609	0.71	+0.4
4,248,761	-		Sama_3609	0.71	-0.2
4,248,769	+		Sama_3609	0.71	-0.2
4,248,769	+		Sama_3609	0.71	+0.8
4,248,769	+		Sama_3609	0.71	-1.7
4,248,769	+		Sama_3609	0.71	+0.7
4,248,845	+		Sama_3609	0.74	+1.5
4,248,845	+		Sama_3609	0.74	+1.0
4,248,846	-		Sama_3609	0.74	-0.1
4,248,926	-		Sama_3609	0.76	-1.3
4,248,982	-		Sama_3609	0.78	+1.9
4,248,982	-		Sama_3609	0.78	-0.3
4,249,054	+		Sama_3609	0.81	-2.2
4,249,054	+		Sama_3609	0.81	-0.6
4,249,080	+		Sama_3609	0.82	-0.5
4,249,080	+		Sama_3609	0.82	-0.9
4,249,080	+		Sama_3609	0.82	-1.5
4,249,080	+		Sama_3609	0.82	-1.1
4,249,081	-		Sama_3609	0.82	+0.8
4,249,081	-		Sama_3609	0.82	-0.0
4,249,084	+		Sama_3609	0.82	-0.5
4,249,084	+		Sama_3609	0.82	-0.5
4,249,084	+		Sama_3609	0.82	-0.8
4,249,084	+		Sama_3609	0.82	-0.0
4,249,084	+		Sama_3609	0.82	-1.0
4,249,084	+		Sama_3609	0.82	+0.4
4,249,084	+		Sama_3609	0.82	+0.4
4,249,084	+		Sama_3609	0.82	+0.7
4,249,084	+		Sama_3609	0.82	-1.1
4,249,084	+		Sama_3609	0.82	+0.7
4,249,084	+		Sama_3609	0.82	+0.5
4,249,084	+		Sama_3609	0.82	-0.6
4,249,084	+		Sama_3609	0.82	-2.1
4,249,084	+		Sama_3609	0.82	+1.0
4,249,084	+		Sama_3609	0.82	-1.2
4,249,084	+		Sama_3609	0.82	-1.1
4,249,084	+		Sama_3609	0.82	-0.3
4,249,084	+		Sama_3609	0.82	-0.3
4,249,084	+		Sama_3609	0.82	+1.4
4,249,084	+		Sama_3609	0.82	-0.6
4,249,084	+		Sama_3609	0.82	-1.0
4,249,084	+		Sama_3609	0.82	-2.2
4,249,084	+		Sama_3609	0.82	-1.6
4,249,084	+		Sama_3609	0.82	-0.9
4,249,085	-		Sama_3609	0.82	+0.4
4,249,085	-		Sama_3609	0.82	-0.1
4,249,085	-		Sama_3609	0.82	+0.2
4,249,085	-		Sama_3609	0.82	+0.1
4,249,085	-		Sama_3609	0.82	-0.2
4,249,085	-		Sama_3609	0.82	-2.5
4,249,085	-		Sama_3609	0.82	-0.4
4,249,085	-		Sama_3609	0.82	-0.7
4,249,085	-		Sama_3609	0.82	+1.5
4,249,085	-		Sama_3609	0.82	-0.2
4,249,085	-		Sama_3609	0.82	-1.7
4,249,085	-		Sama_3609	0.82	-0.0
4,249,085	-		Sama_3609	0.82	-1.3
4,249,085	-		Sama_3609	0.82	-0.3
4,249,085	-		Sama_3609	0.82	-0.8
4,249,085	-		Sama_3609	0.82	-2.3
4,249,085	-		Sama_3609	0.82	+0.3
4,249,085	-		Sama_3609	0.82	-1.1
4,249,085	-		Sama_3609	0.82	+0.3
4,249,086	+		Sama_3609	0.82	-2.6
4,249,086	+		Sama_3609	0.82	-0.7
4,249,086	+		Sama_3609	0.82	-0.6
4,249,086	+		Sama_3609	0.82	+1.4
4,249,086	+		Sama_3609	0.82	+0.0
4,249,086	+		Sama_3609	0.82	+0.0
4,249,086	+		Sama_3609	0.82	+0.5
4,249,086	+		Sama_3609	0.82	-2.3
4,249,086	+		Sama_3609	0.82	+1.6
4,249,086	+		Sama_3609	0.82	-0.7
4,249,086	+		Sama_3609	0.82	-0.8
4,249,086	+		Sama_3609	0.82	-0.8
4,249,086	+		Sama_3609	0.82	+0.1
4,249,086	+		Sama_3609	0.82	-1.0
4,249,086	+		Sama_3609	0.82	-0.7
4,249,086	+		Sama_3609	0.82	+0.9
4,249,086	+		Sama_3609	0.82	+1.9
4,249,086	+		Sama_3609	0.82	+0.9
4,249,086	+		Sama_3609	0.82	+0.3
4,249,087	-		Sama_3609	0.82	-0.1
4,249,087	-		Sama_3609	0.82	+0.8
4,249,087	-		Sama_3609	0.82	-2.0
4,249,087	-		Sama_3609	0.82	-0.2
4,249,087	-		Sama_3609	0.82	+1.1
4,249,087	-		Sama_3609	0.82	-0.2
4,249,087	-		Sama_3609	0.82	-0.1
4,249,087	-		Sama_3609	0.82	-0.4
4,249,087	-		Sama_3609	0.82	-0.6
4,249,125	+		Sama_3609	0.83	-0.8
4,249,125	+		Sama_3609	0.83	+0.9
4,249,125	+		Sama_3609	0.83	-1.6
4,249,125	+		Sama_3609	0.83	-0.2
4,249,125	+		Sama_3609	0.83	-1.8
4,249,126	-		Sama_3609	0.83	+1.1
4,249,183	+		Sama_3609	0.85	-0.1
4,249,204	+		Sama_3609	0.86	-3.0
4,249,204	+		Sama_3609	0.86	-1.3
4,249,216	+		Sama_3609	0.87	-0.2
4,249,239	+		Sama_3609	0.87	-2.9
4,249,368	+				-1.6
4,249,368	+				+0.4
4,249,368	+				+0.7
4,249,369	-				-0.6
4,249,369	-				-1.5
4,249,369	-				+1.1
4,249,369	-				-0.7
4,249,369	-				-1.4
4,249,465	+				-0.5
4,249,465	+				-2.7
4,249,465	+				+0.5
4,249,465	+				-1.9
4,249,465	+				-0.8
4,249,465	+				-0.1
4,249,465	+				+1.2
4,249,465	+				-1.6
4,249,466	-				+0.2
4,249,466	-				-0.5
4,249,466	-				-0.3
4,249,466	-				-0.1
4,249,466	-				-0.6
4,249,466	-				-2.6
4,249,466	-				-1.0
4,249,585	+				-0.0
4,249,591	+				-1.9
4,249,591	+				-1.2
4,249,592	-				-1.9
4,249,592	-				-0.2
4,249,601	+				-2.3
4,249,614	+				+0.1
4,249,625	+				-0.7
4,249,635	+		Sama_3610	0.11	+0.8
4,249,635	+		Sama_3610	0.11	-1.0
4,249,635	+		Sama_3610	0.11	-0.6
4,249,635	+		Sama_3610	0.11	-0.8
4,249,636	-		Sama_3610	0.12	-0.3
4,249,636	-		Sama_3610	0.12	-1.4
4,249,638	+		Sama_3610	0.13	-3.2
4,249,638	+		Sama_3610	0.13	-2.2
4,249,639	-		Sama_3610	0.13	+0.1
4,249,733	+		Sama_3610	0.62	+0.1
4,249,734	-		Sama_3610	0.62	-1.5
4,249,807	+				-1.3
4,249,807	+				-0.3
4,249,864	+				-0.4
4,249,865	-				-1.7
4,249,865	-				+0.3
4,249,885	+				-2.6
4,249,886	-				-0.8
4,249,886	-				-1.6
4,249,897	-				+0.5
4,249,995	+				-0.9
4,250,031	+				+1.9
4,250,032	-				+0.7
4,250,107	+				+0.7
4,250,107	+				+0.3
4,250,107	+				-0.1
4,250,108	-				+1.5
4,250,108	-				+0.3
4,250,108	-				+1.6
4,250,108	-				+0.6
4,250,108	-				-0.4
4,250,169	-				+0.4
4,250,258	+				-0.8
4,250,275	-				-1.6
4,250,275	-				+1.4
4,250,275	-				-0.6
4,250,275	-				-0.5
4,250,307	+				+1.2
4,250,427	+				-2.9
4,250,427	+				-0.3
4,250,427	+				-0.4
4,250,509	+				+1.2
4,250,509	+				-0.6
4,250,510	-				-0.0
4,250,510	-				-1.7
4,250,577	+				-1.5
4,250,577	+				-0.7
4,250,577	+				-0.1
4,250,577	+				-0.3
4,250,577	+				+0.6
4,250,577	+				-0.3
4,250,577	+				-1.4
4,250,577	+				-1.0
4,250,577	+				-1.7
4,250,578	-				-0.4
4,250,578	-				+0.7
4,250,578	-				+1.9
4,250,578	-				-1.8
4,250,578	-				-0.4
4,250,578	-				+0.4
4,250,578	-				-0.3
4,250,581	+				-0.1
4,250,581	+				+0.9
4,250,581	+				-0.1
4,250,581	+				-0.0
4,250,582	-				+1.0
4,250,582	-				-0.7
4,250,582	-				+0.1
4,250,623	+				-1.1
4,250,623	+				-0.0
4,250,624	-				+0.1
4,250,624	-				-1.1
4,250,625	+				+0.6
4,250,625	+				+1.0
4,250,625	+				-0.4
4,250,625	+				-0.7
4,250,625	+				-0.6
4,250,626	-				-0.5
4,250,626	-				+1.1
4,250,626	-				+0.6
4,250,626	-				-0.6
4,250,626	-				+0.5
4,250,626	-				+0.1
4,250,626	-				-0.4
4,250,626	-				-0.7
4,250,626	-				+0.7
4,250,640	-				+0.2
4,250,672	+				+1.0
4,250,672	+				-0.2
4,250,694	+				-0.1
4,250,694	+				+0.6
4,250,695	-				+0.1
4,250,715	-				-0.3
4,250,727	+				+0.6
4,250,727	+				+0.3
4,250,727	+				+0.9
4,250,727	+				+2.1
4,250,727	+				-0.7
4,250,727	+				+0.2
4,250,727	+				-0.4
4,250,727	+				-0.2
4,250,728	-				+0.4
4,250,728	-				+0.1
4,250,728	-				-0.6
4,250,728	-				-1.0
4,250,728	-				+0.3
4,250,728	-				+1.5
4,250,728	-				+0.4
4,250,728	-				+0.5
4,250,728	-				-0.4
4,250,736	+		Sama_3611	0.11	-0.6
4,250,736	+		Sama_3611	0.11	+1.1
4,250,736	+		Sama_3611	0.11	+0.5
4,250,737	-		Sama_3611	0.11	-0.2
4,250,769	+		Sama_3611	0.14	-0.2
4,250,769	+		Sama_3611	0.14	+0.0
4,250,769	+		Sama_3611	0.14	-0.3
4,250,769	+		Sama_3611	0.14	-0.6
4,250,769	+		Sama_3611	0.14	+0.0
4,250,769	+		Sama_3611	0.14	-1.2
4,250,769	+		Sama_3611	0.14	-1.6
4,250,769	+		Sama_3611	0.14	+3.1
4,250,769	+		Sama_3611	0.14	-1.6
4,250,770	-		Sama_3611	0.14	+0.8
4,250,770	-		Sama_3611	0.14	+0.3
4,250,770	-		Sama_3611	0.14	-0.1
4,250,770	-		Sama_3611	0.14	+0.2
4,250,770	-		Sama_3611	0.14	-0.7
4,250,770	-		Sama_3611	0.14	+0.1
4,250,770	-		Sama_3611	0.14	+0.2
4,250,770	-		Sama_3611	0.14	+0.7
4,250,770	-		Sama_3611	0.14	-0.3
4,250,770	-		Sama_3611	0.14	-0.4
4,250,770	-		Sama_3611	0.14	+0.4
4,250,770	-		Sama_3611	0.14	+1.0
4,250,776	+		Sama_3611	0.14	-0.7
4,250,776	+		Sama_3611	0.14	-0.8
4,250,776	+		Sama_3611	0.14	-1.3
4,250,776	+		Sama_3611	0.14	+0.8
4,250,777	-		Sama_3611	0.15	-0.3
4,250,777	-		Sama_3611	0.15	+0.6
4,250,777	-		Sama_3611	0.15	-1.2