Strain Fitness in Shewanella amazonensis SB2B around Sama_3469

Experiment: Paraquat dichloride 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_3468 and Sama_3469 are separated by 114 nucleotidesSama_3469 and Sama_3470 overlap by 1 nucleotidesSama_3470 and Sama_3471 are separated by 86 nucleotides Sama_3468: Sama_3468 - cell division protein FtsY (RefSeq), at 4,097,738 to 4,099,429 _3468 Sama_3469: Sama_3469 - hypothetical protein (RefSeq), at 4,099,544 to 4,100,173 _3469 Sama_3470: Sama_3470 - hypothetical protein (RefSeq), at 4,100,173 to 4,100,466 _3470 Sama_3471: Sama_3471 - tetraheme cytochrome c (RefSeq), at 4,100,553 to 4,101,116 _3471 Position (kb) 4099 4100 4101Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4099.413 kb on - strandat 4099.450 kb on - strandat 4099.450 kb on - strandat 4099.462 kb on - strandat 4099.469 kb on - strandat 4099.469 kb on - strandat 4099.469 kb on - strandat 4099.507 kb on - strandat 4099.802 kb on + strand, within Sama_3469at 4099.803 kb on - strand, within Sama_3469at 4100.048 kb on + strand, within Sama_3469at 4100.048 kb on + strand, within Sama_3469at 4100.048 kb on + strand, within Sama_3469at 4100.049 kb on - strand, within Sama_3469at 4100.107 kb on + strand, within Sama_3469at 4100.107 kb on + strand, within Sama_3469at 4100.108 kb on - strand, within Sama_3469at 4100.108 kb on - strand, within Sama_3469at 4100.108 kb on - strand, within Sama_3469at 4100.108 kb on - strand, within Sama_3469at 4100.136 kb on - strandat 4100.136 kb on - strandat 4100.142 kb on + strandat 4100.142 kb on + strandat 4100.143 kb on - strandat 4100.143 kb on - strandat 4100.171 kb on + strandat 4100.171 kb on + strandat 4100.172 kb on - strandat 4100.233 kb on + strand, within Sama_3470at 4100.233 kb on + strand, within Sama_3470at 4100.234 kb on - strand, within Sama_3470at 4100.234 kb on - strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.264 kb on + strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.265 kb on - strand, within Sama_3470at 4100.268 kb on + strand, within Sama_3470at 4100.268 kb on + strand, within Sama_3470at 4100.273 kb on + strand, within Sama_3470at 4100.274 kb on - strand, within Sama_3470at 4100.336 kb on + strand, within Sama_3470at 4100.337 kb on - strand, within Sama_3470at 4100.337 kb on - strand, within Sama_3470at 4100.374 kb on + strand, within Sama_3470at 4100.375 kb on - strand, within Sama_3470at 4100.399 kb on + strand, within Sama_3470at 4100.399 kb on + strand, within Sama_3470at 4100.399 kb on + strand, within Sama_3470at 4100.400 kb on - strand, within Sama_3470at 4100.426 kb on + strand, within Sama_3470at 4100.426 kb on + strand, within Sama_3470at 4100.465 kb on - strandat 4100.516 kb on - strandat 4100.537 kb on - strandat 4100.551 kb on + strandat 4100.567 kb on - strandat 4100.598 kb on - strandat 4100.615 kb on - strand, within Sama_3471at 4100.636 kb on + strand, within Sama_3471at 4100.636 kb on + strand, within Sama_3471at 4100.636 kb on + strand, within Sama_3471at 4100.636 kb on + strand, within Sama_3471at 4100.637 kb on - strand, within Sama_3471at 4100.637 kb on - strand, within Sama_3471at 4100.687 kb on - strand, within Sama_3471at 4100.691 kb on - strand, within Sama_3471at 4100.691 kb on - strand, within Sama_3471at 4100.691 kb on - strand, within Sama_3471at 4100.737 kb on + strand, within Sama_3471at 4100.737 kb on + strand, within Sama_3471at 4100.737 kb on + strand, within Sama_3471at 4100.737 kb on + strand, within Sama_3471at 4100.737 kb on + strand, within Sama_3471at 4100.738 kb on - strand, within Sama_3471at 4100.738 kb on - strand, within Sama_3471at 4100.738 kb on - strand, within Sama_3471at 4100.738 kb on - strand, within Sama_3471at 4100.765 kb on + strand, within Sama_3471at 4100.835 kb on + strand, within Sama_3471at 4100.835 kb on + strand, within Sama_3471at 4100.836 kb on - strand, within Sama_3471at 4100.836 kb on - strand, within Sama_3471at 4100.854 kb on - strand, within Sama_3471at 4100.857 kb on + strand, within Sama_3471at 4100.858 kb on - strand, within Sama_3471at 4100.906 kb on + strand, within Sama_3471at 4100.916 kb on - strand, within Sama_3471at 4100.916 kb on - strand, within Sama_3471at 4100.941 kb on - strand, within Sama_3471at 4100.941 kb on - strand, within Sama_3471at 4100.941 kb on - strand, within Sama_3471at 4100.978 kb on + strand, within Sama_3471at 4100.979 kb on - strand, within Sama_3471at 4100.979 kb on - strand, within Sama_3471at 4100.993 kb on + strand, within Sama_3471at 4100.994 kb on - strand, within Sama_3471at 4101.002 kb on + strand, within Sama_3471at 4101.002 kb on + strand, within Sama_3471at 4101.002 kb on + strand, within Sama_3471at 4101.002 kb on + strand, within Sama_3471at 4101.002 kb on + strand, within Sama_3471at 4101.003 kb on - strand, within Sama_3471at 4101.003 kb on - strand, within Sama_3471at 4101.003 kb on - strand, within Sama_3471at 4101.003 kb on - strand, within Sama_3471at 4101.003 kb on - strand, within Sama_3471at 4101.003 kb on - strand, within Sama_3471at 4101.055 kb on - strand, within Sama_3471at 4101.055 kb on - strand, within Sama_3471at 4101.073 kb on - strandat 4101.073 kb on - strandat 4101.073 kb on - strandat 4101.073 kb on - strandat 4101.073 kb on - strandat 4101.099 kb on + strandat 4101.100 kb on - strandat 4101.122 kb on + strandat 4101.123 kb on - strandat 4101.123 kb on - strandat 4101.123 kb on - strandat 4101.143 kb on + strandat 4101.152 kb on - strandat 4101.154 kb on + strandat 4101.155 kb on - strandat 4101.162 kb on + strandat 4101.162 kb on + strandat 4101.163 kb on - strandat 4101.163 kb on - strandat 4101.163 kb on - strandat 4101.163 kb on - strandat 4101.165 kb on + strandat 4101.165 kb on + strandat 4101.165 kb on + strandat 4101.166 kb on - strandat 4101.166 kb on - strandat 4101.166 kb on - strandat 4101.166 kb on - strandat 4101.166 kb on - strandat 4101.170 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml
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4,099,413 - +0.3
4,099,450 - +0.5
4,099,450 - -0.4
4,099,462 - -1.0
4,099,469 - +0.9
4,099,469 - +0.9
4,099,469 - +0.7
4,099,507 - +0.3
4,099,802 + Sama_3469 0.41 -1.2
4,099,803 - Sama_3469 0.41 -1.2
4,100,048 + Sama_3469 0.80 -0.5
4,100,048 + Sama_3469 0.80 -2.7
4,100,048 + Sama_3469 0.80 -0.1
4,100,049 - Sama_3469 0.80 -2.9
4,100,107 + Sama_3469 0.89 -1.5
4,100,107 + Sama_3469 0.89 +0.9
4,100,108 - Sama_3469 0.90 -2.1
4,100,108 - Sama_3469 0.90 -1.3
4,100,108 - Sama_3469 0.90 -0.4
4,100,108 - Sama_3469 0.90 -2.1
4,100,136 - -2.7
4,100,136 - -1.4
4,100,142 + -0.8
4,100,142 + +0.2
4,100,143 - -1.1
4,100,143 - -0.3
4,100,171 + -1.1
4,100,171 + -0.3
4,100,172 - -2.9
4,100,233 + Sama_3470 0.20 -0.5
4,100,233 + Sama_3470 0.20 -0.6
4,100,234 - Sama_3470 0.21 +0.0
4,100,234 - Sama_3470 0.21 +1.9
4,100,264 + Sama_3470 0.31 +0.3
4,100,264 + Sama_3470 0.31 -0.1
4,100,264 + Sama_3470 0.31 +0.4
4,100,264 + Sama_3470 0.31 -1.6
4,100,264 + Sama_3470 0.31 -1.8
4,100,264 + Sama_3470 0.31 -2.2
4,100,264 + Sama_3470 0.31 -0.7
4,100,264 + Sama_3470 0.31 -0.7
4,100,264 + Sama_3470 0.31 +0.3
4,100,264 + Sama_3470 0.31 +0.2
4,100,264 + Sama_3470 0.31 +1.4
4,100,264 + Sama_3470 0.31 -0.2
4,100,264 + Sama_3470 0.31 -0.1
4,100,264 + Sama_3470 0.31 +0.5
4,100,264 + Sama_3470 0.31 -1.6
4,100,264 + Sama_3470 0.31 +0.6
4,100,264 + Sama_3470 0.31 +0.9
4,100,264 + Sama_3470 0.31 +0.2
4,100,264 + Sama_3470 0.31 +2.5
4,100,264 + Sama_3470 0.31 +0.4
4,100,264 + Sama_3470 0.31 +0.5
4,100,264 + Sama_3470 0.31 +0.5
4,100,264 + Sama_3470 0.31 +2.1
4,100,264 + Sama_3470 0.31 -1.4
4,100,264 + Sama_3470 0.31 +0.9
4,100,264 + Sama_3470 0.31 +1.2
4,100,264 + Sama_3470 0.31 +0.4
4,100,265 - Sama_3470 0.31 +1.1
4,100,265 - Sama_3470 0.31 +0.3
4,100,265 - Sama_3470 0.31 +2.7
4,100,265 - Sama_3470 0.31 -0.8
4,100,265 - Sama_3470 0.31 -1.5
4,100,265 - Sama_3470 0.31 -0.4
4,100,265 - Sama_3470 0.31 +1.0
4,100,265 - Sama_3470 0.31 -0.6
4,100,265 - Sama_3470 0.31 -1.3
4,100,265 - Sama_3470 0.31 -0.7
4,100,265 - Sama_3470 0.31 +0.3
4,100,265 - Sama_3470 0.31 +0.3
4,100,265 - Sama_3470 0.31 -0.1
4,100,265 - Sama_3470 0.31 -1.0
4,100,265 - Sama_3470 0.31 -0.5
4,100,265 - Sama_3470 0.31 -1.1
4,100,265 - Sama_3470 0.31 +0.3
4,100,265 - Sama_3470 0.31 -2.0
4,100,265 - Sama_3470 0.31 -0.6
4,100,265 - Sama_3470 0.31 -1.5
4,100,265 - Sama_3470 0.31 -0.4
4,100,265 - Sama_3470 0.31 +0.2
4,100,265 - Sama_3470 0.31 -0.3
4,100,265 - Sama_3470 0.31 +0.9
4,100,265 - Sama_3470 0.31 -0.6
4,100,265 - Sama_3470 0.31 +1.3
4,100,265 - Sama_3470 0.31 +1.0
4,100,265 - Sama_3470 0.31 -0.5
4,100,265 - Sama_3470 0.31 +2.3
4,100,265 - Sama_3470 0.31 +1.0
4,100,265 - Sama_3470 0.31 -0.5
4,100,265 - Sama_3470 0.31 +1.3
4,100,265 - Sama_3470 0.31 -1.2
4,100,265 - Sama_3470 0.31 +0.0
4,100,265 - Sama_3470 0.31 -0.7
4,100,265 - Sama_3470 0.31 -2.2
4,100,265 - Sama_3470 0.31 +1.1
4,100,265 - Sama_3470 0.31 -0.1
4,100,265 - Sama_3470 0.31 +0.3
4,100,265 - Sama_3470 0.31 +0.5
4,100,265 - Sama_3470 0.31 -1.1
4,100,265 - Sama_3470 0.31 -1.7
4,100,265 - Sama_3470 0.31 +0.1
4,100,268 + Sama_3470 0.32 -0.4
4,100,268 + Sama_3470 0.32 +1.8
4,100,273 + Sama_3470 0.34 -0.1
4,100,274 - Sama_3470 0.34 +0.4
4,100,336 + Sama_3470 0.55 -0.2
4,100,337 - Sama_3470 0.56 -0.5
4,100,337 - Sama_3470 0.56 -0.3
4,100,374 + Sama_3470 0.68 +0.6
4,100,375 - Sama_3470 0.69 +0.2
4,100,399 + Sama_3470 0.77 +1.2
4,100,399 + Sama_3470 0.77 +0.1
4,100,399 + Sama_3470 0.77 -1.3
4,100,400 - Sama_3470 0.77 -0.9
4,100,426 + Sama_3470 0.86 +1.0
4,100,426 + Sama_3470 0.86 -1.1
4,100,465 - -0.6
4,100,516 - +0.3
4,100,537 - -0.1
4,100,551 + +1.6
4,100,567 - +0.6
4,100,598 - -0.2
4,100,615 - Sama_3471 0.11 +0.5
4,100,636 + Sama_3471 0.15 +1.8
4,100,636 + Sama_3471 0.15 -1.1
4,100,636 + Sama_3471 0.15 -1.1
4,100,636 + Sama_3471 0.15 -0.7
4,100,637 - Sama_3471 0.15 -0.4
4,100,637 - Sama_3471 0.15 +0.0
4,100,687 - Sama_3471 0.24 -2.3
4,100,691 - Sama_3471 0.24 -0.6
4,100,691 - Sama_3471 0.24 -1.2
4,100,691 - Sama_3471 0.24 -1.0
4,100,737 + Sama_3471 0.33 -1.1
4,100,737 + Sama_3471 0.33 -1.1
4,100,737 + Sama_3471 0.33 -0.5
4,100,737 + Sama_3471 0.33 -0.8
4,100,737 + Sama_3471 0.33 -0.0
4,100,738 - Sama_3471 0.33 -2.1
4,100,738 - Sama_3471 0.33 -0.7
4,100,738 - Sama_3471 0.33 +1.9
4,100,738 - Sama_3471 0.33 -1.3
4,100,765 + Sama_3471 0.38 -0.7
4,100,835 + Sama_3471 0.50 +0.9
4,100,835 + Sama_3471 0.50 -0.5
4,100,836 - Sama_3471 0.50 -0.6
4,100,836 - Sama_3471 0.50 -2.2
4,100,854 - Sama_3471 0.53 -0.6
4,100,857 + Sama_3471 0.54 -0.0
4,100,858 - Sama_3471 0.54 +1.9
4,100,906 + Sama_3471 0.63 -0.6
4,100,916 - Sama_3471 0.64 +0.2
4,100,916 - Sama_3471 0.64 +1.2
4,100,941 - Sama_3471 0.69 -0.4
4,100,941 - Sama_3471 0.69 -2.7
4,100,941 - Sama_3471 0.69 -0.5
4,100,978 + Sama_3471 0.75 -0.5
4,100,979 - Sama_3471 0.76 -0.2
4,100,979 - Sama_3471 0.76 -0.4
4,100,993 + Sama_3471 0.78 -0.8
4,100,994 - Sama_3471 0.78 -0.2
4,101,002 + Sama_3471 0.80 -1.8
4,101,002 + Sama_3471 0.80 -3.0
4,101,002 + Sama_3471 0.80 -1.3
4,101,002 + Sama_3471 0.80 +0.5
4,101,002 + Sama_3471 0.80 +2.7
4,101,003 - Sama_3471 0.80 -1.0
4,101,003 - Sama_3471 0.80 -1.2
4,101,003 - Sama_3471 0.80 +1.4
4,101,003 - Sama_3471 0.80 -1.7
4,101,003 - Sama_3471 0.80 -1.5
4,101,003 - Sama_3471 0.80 +0.2
4,101,055 - Sama_3471 0.89 -0.9
4,101,055 - Sama_3471 0.89 -0.3
4,101,073 - +0.9
4,101,073 - -0.3
4,101,073 - +0.7
4,101,073 - +0.3
4,101,073 - +1.6
4,101,099 + -0.7
4,101,100 - +0.9
4,101,122 + -1.0
4,101,123 - -0.3
4,101,123 - -1.0
4,101,123 - +0.5
4,101,143 + +0.3
4,101,152 - +0.4
4,101,154 + -1.6
4,101,155 - -0.3
4,101,162 + +0.3
4,101,162 + -1.1
4,101,163 - -1.7
4,101,163 - +1.0
4,101,163 - -0.1
4,101,163 - -0.4
4,101,165 + -0.1
4,101,165 + -0.7
4,101,165 + -1.3
4,101,166 - -0.4
4,101,166 - +0.5
4,101,166 - +0.1
4,101,166 - -0.7
4,101,166 - +0.5
4,101,170 + +1.3

Or see this region's nucleotide sequence