Strain Fitness in Shewanella amazonensis SB2B around Sama_3357

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,984,132	+		Sama_3355	0.32	+0.1
3,984,132	+		Sama_3355	0.32	-2.4
3,984,133	-		Sama_3355	0.33	+0.3
3,984,133	-		Sama_3355	0.33	-0.8
3,984,133	-		Sama_3355	0.33	+0.1
3,984,133	-		Sama_3355	0.33	+0.2
3,984,133	-		Sama_3355	0.33	+0.8
3,984,135	+		Sama_3355	0.33	-0.1
3,984,136	-		Sama_3355	0.34	-0.7
3,984,136	-		Sama_3355	0.34	+0.1
3,984,136	-		Sama_3355	0.34	-1.6
3,984,155	+		Sama_3355	0.39	+1.1
3,984,156	-		Sama_3355	0.40	-0.2
3,984,216	+		Sama_3355	0.58	+0.8
3,984,217	-		Sama_3355	0.58	-0.5
3,984,217	-		Sama_3355	0.58	+0.4
3,984,260	+		Sama_3355	0.72	+0.2
3,984,260	+		Sama_3355	0.72	-0.2
3,984,260	+		Sama_3355	0.72	-0.8
3,984,261	-		Sama_3355	0.72	+0.6
3,984,261	-		Sama_3355	0.72	+0.4
3,984,261	-		Sama_3355	0.72	-0.5
3,984,277	+		Sama_3355	0.77	-0.7
3,984,277	+		Sama_3355	0.77	-0.0
3,984,301	+		Sama_3355	0.84	-1.2
3,984,301	+		Sama_3355	0.84	+1.2
3,984,302	-		Sama_3355	0.84	-0.3
3,984,323	-				+1.3
3,984,337	+				-1.4
3,984,337	+				+0.4
3,984,338	-				-0.1
3,984,338	-				-1.0
3,984,354	-				-0.2
3,984,429	+				-0.1
3,984,440	+				-0.3
3,984,440	+				+0.4
3,984,447	+				-2.1
3,985,053	+				-1.4
3,985,053	+				-2.5
3,985,054	-				-1.9
3,985,054	-				-1.1
3,985,054	-				-1.0
3,985,054	-				-2.2
3,985,082	-				-1.4
3,985,116	+		Sama_3357	0.12	-1.9
3,985,117	-		Sama_3357	0.12	-1.4
3,985,246	+		Sama_3357	0.35	-1.4
3,985,247	-		Sama_3357	0.35	-1.6
3,985,308	+		Sama_3357	0.46	-2.8
3,985,308	+		Sama_3357	0.46	-1.8
3,985,315	+		Sama_3357	0.47	-1.4
3,985,348	-		Sama_3357	0.53	-1.1
3,985,348	-		Sama_3357	0.53	+0.8
3,985,348	-		Sama_3357	0.53	-1.0
3,985,348	-		Sama_3357	0.53	-1.2
3,985,422	+		Sama_3357	0.66	+0.8
3,985,469	-		Sama_3357	0.74	+0.5
3,985,551	+		Sama_3357	0.89	-2.1
3,985,565	-				-0.8
3,985,565	-				-1.6
3,985,582	+				-1.0
3,985,582	+				-0.8
3,985,583	-				-3.0
3,985,592	-				-1.4
3,985,751	+		Sama_3358	0.17	-0.2
3,985,751	+		Sama_3358	0.17	-0.2
3,985,752	-		Sama_3358	0.17	+0.9
3,985,768	+		Sama_3358	0.19	+0.1
3,985,768	+		Sama_3358	0.19	-1.6
3,985,784	+		Sama_3358	0.21	+2.4
3,985,785	-		Sama_3358	0.21	+0.5
3,985,785	-		Sama_3358	0.21	+0.4
3,985,785	-		Sama_3358	0.21	+0.5
3,985,785	-		Sama_3358	0.21	+0.3
3,985,785	-		Sama_3358	0.21	-1.5
3,985,831	+		Sama_3358	0.26	-1.4
3,985,831	+		Sama_3358	0.26	-1.2
3,985,831	+		Sama_3358	0.26	-1.5
3,985,832	-		Sama_3358	0.26	+1.2
3,985,832	-		Sama_3358	0.26	-1.3
3,985,832	-		Sama_3358	0.26	-1.4
3,985,832	-		Sama_3358	0.26	+0.8
3,985,832	-		Sama_3358	0.26	+0.6
3,985,839	+		Sama_3358	0.27	-0.2
3,985,839	+		Sama_3358	0.27	+1.0
3,985,872	+		Sama_3358	0.31	+0.2
3,985,872	+		Sama_3358	0.31	-0.0
3,985,898	+		Sama_3358	0.34	-0.8
3,985,916	+		Sama_3358	0.36	+2.0
3,985,916	+		Sama_3358	0.36	+0.7
3,985,916	+		Sama_3358	0.36	-1.4
3,985,917	-		Sama_3358	0.36	-2.1
3,985,917	-		Sama_3358	0.36	-0.5
3,985,917	-		Sama_3358	0.36	+0.2
3,985,943	+		Sama_3358	0.39	-1.6
3,985,944	-		Sama_3358	0.39	+0.4
3,985,944	-		Sama_3358	0.39	+0.8
3,985,945	+		Sama_3358	0.39	+1.0
3,985,945	+		Sama_3358	0.39	+1.2
3,985,945	+		Sama_3358	0.39	-0.3
3,985,945	+		Sama_3358	0.39	+0.9
3,985,946	-		Sama_3358	0.39	-1.0
3,985,946	-		Sama_3358	0.39	+2.0
3,985,946	-		Sama_3358	0.39	+0.0
3,985,946	-		Sama_3358	0.39	-0.3
3,985,946	-		Sama_3358	0.39	+0.9
3,985,946	-		Sama_3358	0.39	-0.6
3,985,953	+		Sama_3358	0.40	-0.5
3,985,953	+		Sama_3358	0.40	+0.2
3,985,953	+		Sama_3358	0.40	-1.9
3,985,953	+		Sama_3358	0.40	+3.0
3,985,954	-		Sama_3358	0.40	+0.5
3,985,954	-		Sama_3358	0.40	+0.4
3,985,959	+		Sama_3358	0.41	-0.3
3,985,959	+		Sama_3358	0.41	+0.6
3,985,960	-		Sama_3358	0.41	-0.9
3,985,960	-		Sama_3358	0.41	-0.6
3,985,960	-		Sama_3358	0.41	-1.6
3,985,960	-		Sama_3358	0.41	+1.3
3,985,960	-		Sama_3358	0.41	+1.6
3,985,960	-		Sama_3358	0.41	-0.2
3,985,960	-		Sama_3358	0.41	+1.8
3,985,960	-		Sama_3358	0.41	+1.0
3,985,960	-		Sama_3358	0.41	-0.9
3,985,960	-		Sama_3358	0.41	+2.9
3,985,960	-		Sama_3358	0.41	-0.1
3,985,960	-		Sama_3358	0.41	-2.3
3,985,960	-		Sama_3358	0.41	-1.5
3,985,960	-		Sama_3358	0.41	+1.5
3,985,960	-		Sama_3358	0.41	-1.0
3,985,960	-		Sama_3358	0.41	+0.6
3,986,168	+		Sama_3358	0.64	-1.4
3,986,169	-		Sama_3358	0.65	-0.5
3,986,169	-		Sama_3358	0.65	+0.5
3,986,169	-		Sama_3358	0.65	-0.3
3,986,169	-		Sama_3358	0.65	+0.5
3,986,169	-		Sama_3358	0.65	+0.5
3,986,169	-		Sama_3358	0.65	-1.2
3,986,182	+		Sama_3358	0.66	+0.1
3,986,182	+		Sama_3358	0.66	+1.0
3,986,283	+		Sama_3358	0.78	-1.0
3,986,283	+		Sama_3358	0.78	+0.1
3,986,284	-		Sama_3358	0.78	-0.8
3,986,284	-		Sama_3358	0.78	-0.2
3,986,346	+		Sama_3358	0.85	+0.1
3,986,346	+		Sama_3358	0.85	-0.3
3,986,346	+		Sama_3358	0.85	+1.5
3,986,347	-		Sama_3358	0.85	-0.7
3,986,347	-		Sama_3358	0.85	+0.2
3,986,347	-		Sama_3358	0.85	-0.8
3,986,413	+				-0.5
3,986,414	-				+1.6
3,986,414	-				+9.7
3,986,482	-				+0.8
3,986,514	+				-1.8
3,986,514	+				+1.0
3,986,514	+				+2.0
3,986,514	+				+0.6
3,986,514	+				-1.0
3,986,514	+				+0.5
3,986,514	+				+0.4
3,986,514	+				+0.8
3,986,515	-				-0.2
3,986,515	-				-0.5
3,986,515	-				+0.5
3,986,515	-				+0.8
3,986,516	+				-1.2
3,986,516	+				+1.0
3,986,517	-				-1.1
3,986,517	-				+0.3
3,986,517	-				+0.4
3,986,527	+				+0.1
3,986,528	-				+1.2
3,986,566	-				-0.5
3,986,608	+				-0.1
3,986,608	+				-0.0
3,986,608	+				-0.3
3,986,608	+				-0.5