Strain Fitness in Shewanella amazonensis SB2B around Sama_3333

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,959,322	+				-2.4
3,959,322	+				-3.4
3,959,322	+				-3.1
3,959,322	+				-0.7
3,959,322	+				-2.9
3,959,322	+				-4.2
3,959,323	-				-1.3
3,959,323	-				-1.4
3,959,323	-				-1.4
3,959,326	+				-2.0
3,959,326	+				-1.8
3,959,327	-				-0.2
3,959,327	-				-0.5
3,959,327	-				-1.8
3,959,327	-				-2.1
3,959,327	-				+0.2
3,959,327	-				-1.3
3,959,327	-				-2.4
3,959,327	-				-1.2
3,959,327	-				-1.0
3,959,370	+				-0.1
3,959,370	+				-1.4
3,959,371	-				-2.1
3,959,371	-				-0.2
3,959,371	-				-1.5
3,959,371	-				-3.0
3,959,374	+				-2.1
3,959,375	-				-1.5
3,959,409	+				-1.7
3,959,409	+				-0.9
3,959,409	+				+0.8
3,959,409	+				-3.0
3,959,409	+				-0.5
3,959,409	+				-2.0
3,959,410	-				+0.5
3,959,410	-				-1.8
3,959,497	+				-1.4
3,959,497	+				-0.4
3,959,497	+				-0.9
3,959,497	+				-1.1
3,959,497	+				-2.1
3,959,497	+				-1.9
3,959,498	-				+0.1
3,959,498	-				-1.1
3,959,499	+				-1.6
3,959,499	+				-1.9
3,959,499	+				-0.2
3,959,499	+				-0.4
3,959,499	+				-1.2
3,959,499	+				-2.1
3,959,499	+				-0.5
3,959,499	+				+1.1
3,959,500	-				-0.2
3,959,513	+				-2.0
3,959,576	-				+0.3
3,959,657	+		Sama_3332	0.22	+0.4
3,959,657	+		Sama_3332	0.22	-0.1
3,959,657	+		Sama_3332	0.22	-0.3
3,959,658	-		Sama_3332	0.22	-0.1
3,959,659	+		Sama_3332	0.23	+0.4
3,959,659	+		Sama_3332	0.23	-0.0
3,959,756	+		Sama_3332	0.51	+0.5
3,959,756	+		Sama_3332	0.51	-1.0
3,959,756	+		Sama_3332	0.51	-1.2
3,959,757	-		Sama_3332	0.51	+0.2
3,959,757	-		Sama_3332	0.51	-1.2
3,959,757	-		Sama_3332	0.51	+0.1
3,959,757	-		Sama_3332	0.51	-0.1
3,959,757	-		Sama_3332	0.51	+0.3
3,959,762	-		Sama_3332	0.52	+0.3
3,959,762	-		Sama_3332	0.52	-0.2
3,959,762	-		Sama_3332	0.52	-0.8
3,959,762	-		Sama_3332	0.52	+0.6
3,959,776	+		Sama_3332	0.56	+0.5
3,959,776	+		Sama_3332	0.56	+0.2
3,959,776	+		Sama_3332	0.56	-1.2
3,959,776	+		Sama_3332	0.56	-0.0
3,959,776	+		Sama_3332	0.56	+0.1
3,959,776	+		Sama_3332	0.56	-0.7
3,959,776	+		Sama_3332	0.56	-0.8
3,959,776	+		Sama_3332	0.56	-0.4
3,959,776	+		Sama_3332	0.56	-0.5
3,959,776	+		Sama_3332	0.56	-0.1
3,959,776	+		Sama_3332	0.56	-0.3
3,959,776	+		Sama_3332	0.56	+0.2
3,959,776	+		Sama_3332	0.56	+0.1
3,959,776	+		Sama_3332	0.56	-1.0
3,959,776	+		Sama_3332	0.56	-0.5
3,959,776	+		Sama_3332	0.56	-1.0
3,959,776	+		Sama_3332	0.56	+0.7
3,959,777	-		Sama_3332	0.57	+0.3
3,959,777	-		Sama_3332	0.57	-0.0
3,959,777	-		Sama_3332	0.57	-0.7
3,959,777	-		Sama_3332	0.57	+0.4
3,959,777	-		Sama_3332	0.57	+0.1
3,959,777	-		Sama_3332	0.57	-1.3
3,959,777	-		Sama_3332	0.57	+0.2
3,959,777	-		Sama_3332	0.57	-1.7
3,959,777	-		Sama_3332	0.57	-0.6
3,959,777	-		Sama_3332	0.57	-1.5
3,959,777	-		Sama_3332	0.57	-0.6
3,959,777	-		Sama_3332	0.57	+0.1
3,959,777	-		Sama_3332	0.57	+0.3
3,959,777	-		Sama_3332	0.57	-2.5
3,959,777	-		Sama_3332	0.57	+0.1
3,959,777	-		Sama_3332	0.57	+2.3
3,959,825	-		Sama_3332	0.70	+2.0
3,959,828	-		Sama_3332	0.71	-1.4
3,959,847	+		Sama_3332	0.77	-0.4
3,959,848	-		Sama_3332	0.77	-0.1
3,959,848	-		Sama_3332	0.77	+0.4
3,959,911	+				-2.3
3,959,911	+				-0.8
3,959,912	-				-0.4
3,959,912	-				-1.2
3,959,968	-				-0.8
3,959,968	-				+0.3
3,960,011	+				-0.3
3,960,012	-				+1.2
3,960,020	-				-1.7
3,960,035	-				+1.1
3,960,035	-				-1.2
3,960,035	-				+0.1
3,960,062	+				-1.0
3,960,078	-				+1.0
3,960,096	-				-0.7
3,960,128	+				-2.0
3,960,129	-				-0.2
3,960,165	+				-2.0
3,960,208	+				-1.6
3,960,214	+				-0.8
3,960,292	+				-0.1
3,960,292	+				+0.5
3,960,293	-				-1.9
3,960,293	-				-1.5
3,960,293	-				-0.5
3,960,343	-		Sama_3333	0.46	+0.4
3,960,343	-		Sama_3333	0.46	+0.2
3,960,368	-		Sama_3333	0.70	-1.9
3,960,376	+		Sama_3333	0.77	-0.2
3,960,426	+				-1.5
3,960,426	+				-0.2
3,960,427	-				-0.2
3,960,427	-				-0.5
3,960,427	-				+0.2
3,960,445	+				-1.9
3,960,466	-				-0.5
3,960,499	+				-3.4
3,960,499	+				-1.0
3,960,563	+				-2.0
3,960,577	-				-1.7
3,960,583	+				-1.4
3,960,621	-				-0.0
3,960,698	+				-1.4
3,960,698	+				-1.4
3,960,698	+				+0.8
3,960,698	+				+0.2
3,960,698	+				+0.1
3,960,699	-				+0.4
3,960,701	+				+0.3
3,960,702	-				-0.5
3,960,745	-				+1.0
3,960,803	+				+0.5
3,960,815	+				-1.0
3,960,879	+		Sama_3334	0.12	-1.2
3,960,977	-		Sama_3334	0.16	-1.8
3,960,977	-		Sama_3334	0.16	-2.1
3,961,038	+		Sama_3334	0.19	-2.8
3,961,136	+		Sama_3334	0.24	-0.3
3,961,137	-		Sama_3334	0.24	+0.4
3,961,137	-		Sama_3334	0.24	+0.2
3,961,137	-		Sama_3334	0.24	+3.0
3,961,137	-		Sama_3334	0.24	-0.4
3,961,168	+		Sama_3334	0.25	+0.5
3,961,168	+		Sama_3334	0.25	+0.0
3,961,183	+		Sama_3334	0.26	-1.7
3,961,183	+		Sama_3334	0.26	+0.5
3,961,183	+		Sama_3334	0.26	-0.5
3,961,183	+		Sama_3334	0.26	+0.1
3,961,184	-		Sama_3334	0.26	+1.5
3,961,184	-		Sama_3334	0.26	-1.7
3,961,184	-		Sama_3334	0.26	-0.9
3,961,184	-		Sama_3334	0.26	+0.5
3,961,184	-		Sama_3334	0.26	+0.3
3,961,184	-		Sama_3334	0.26	+0.2
3,961,184	-		Sama_3334	0.26	+0.1
3,961,184	-		Sama_3334	0.26	+0.2
3,961,184	-		Sama_3334	0.26	-1.8
3,961,184	-		Sama_3334	0.26	-1.3
3,961,184	-		Sama_3334	0.26	-0.7
3,961,184	-		Sama_3334	0.26	-1.4
3,961,185	+		Sama_3334	0.26	+0.2
3,961,186	-		Sama_3334	0.26	-0.4
3,961,201	+		Sama_3334	0.27	-0.2
3,961,201	+		Sama_3334	0.27	-1.1
3,961,202	-		Sama_3334	0.27	-2.7
3,961,208	+		Sama_3334	0.27	+1.8
3,961,208	+		Sama_3334	0.27	-1.6
3,961,245	+		Sama_3334	0.29	-0.5
3,961,345	+		Sama_3334	0.33	-0.6
3,961,346	-		Sama_3334	0.33	-0.4
3,961,387	-		Sama_3334	0.35	-0.2
3,961,387	-		Sama_3334	0.35	+0.4
3,961,387	-		Sama_3334	0.35	+0.8
3,961,388	+		Sama_3334	0.35	+0.4
3,961,388	+		Sama_3334	0.35	-2.5
3,961,388	+		Sama_3334	0.35	+1.5
3,961,389	-		Sama_3334	0.35	-0.0
3,961,389	-		Sama_3334	0.35	-1.8
3,961,389	-		Sama_3334	0.35	-0.1
3,961,389	-		Sama_3334	0.35	-0.0
3,961,389	-		Sama_3334	0.35	+1.7
3,961,389	-		Sama_3334	0.35	-0.2