Strain Fitness in Shewanella amazonensis SB2B around Sama_3332

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,958,682	+		Sama_3331	0.32	-0.5
3,958,709	-		Sama_3331	0.34	-2.3
3,958,713	+		Sama_3331	0.35	-1.2
3,958,713	+		Sama_3331	0.35	-3.0
3,958,713	+		Sama_3331	0.35	-2.1
3,958,713	+		Sama_3331	0.35	-2.6
3,958,713	+		Sama_3331	0.35	-0.9
3,958,713	+		Sama_3331	0.35	-3.0
3,958,713	+		Sama_3331	0.35	-1.2
3,958,713	+		Sama_3331	0.35	-2.7
3,958,713	+		Sama_3331	0.35	-0.1
3,958,713	+		Sama_3331	0.35	-1.8
3,958,714	-		Sama_3331	0.35	-0.2
3,958,714	-		Sama_3331	0.35	-1.2
3,958,737	+		Sama_3331	0.37	-0.7
3,958,737	+		Sama_3331	0.37	-2.0
3,958,737	+		Sama_3331	0.37	-0.7
3,958,737	+		Sama_3331	0.37	-3.1
3,958,737	+		Sama_3331	0.37	-2.2
3,958,737	+		Sama_3331	0.37	-2.6
3,958,737	+		Sama_3331	0.37	+0.7
3,958,737	+		Sama_3331	0.37	-3.3
3,958,737	+		Sama_3331	0.37	-1.5
3,958,737	+		Sama_3331	0.37	-1.3
3,958,738	-		Sama_3331	0.37	-1.3
3,958,738	-		Sama_3331	0.37	-3.8
3,958,738	-		Sama_3331	0.37	-0.2
3,958,738	-		Sama_3331	0.37	-1.0
3,958,738	-		Sama_3331	0.37	-0.8
3,958,738	-		Sama_3331	0.37	-1.0
3,958,738	-		Sama_3331	0.37	-2.4
3,958,738	-		Sama_3331	0.37	+0.2
3,958,738	-		Sama_3331	0.37	+0.3
3,958,747	+		Sama_3331	0.38	-1.4
3,958,747	+		Sama_3331	0.38	-2.0
3,958,747	+		Sama_3331	0.38	-0.9
3,958,747	+		Sama_3331	0.38	-0.9
3,958,747	+		Sama_3331	0.38	-2.0
3,958,747	+		Sama_3331	0.38	-1.7
3,958,747	+		Sama_3331	0.38	-1.1
3,958,748	-		Sama_3331	0.38	-1.3
3,958,748	-		Sama_3331	0.38	-1.1
3,958,748	-		Sama_3331	0.38	+0.5
3,958,748	-		Sama_3331	0.38	-0.8
3,958,748	-		Sama_3331	0.38	-1.9
3,958,749	+		Sama_3331	0.38	-0.9
3,958,749	+		Sama_3331	0.38	-2.8
3,958,749	+		Sama_3331	0.38	-0.8
3,958,749	+		Sama_3331	0.38	-0.7
3,958,749	+		Sama_3331	0.38	-2.2
3,958,749	+		Sama_3331	0.38	-1.8
3,958,749	+		Sama_3331	0.38	-0.1
3,958,749	+		Sama_3331	0.38	-0.5
3,958,749	+		Sama_3331	0.38	-0.0
3,958,749	+		Sama_3331	0.38	-3.3
3,958,749	+		Sama_3331	0.38	-1.7
3,958,749	+		Sama_3331	0.38	-1.5
3,958,750	-		Sama_3331	0.38	-1.7
3,958,750	-		Sama_3331	0.38	-0.5
3,958,750	-		Sama_3331	0.38	-1.4
3,958,750	-		Sama_3331	0.38	-1.5
3,958,750	-		Sama_3331	0.38	-2.2
3,958,750	-		Sama_3331	0.38	-3.1
3,958,750	-		Sama_3331	0.38	-0.2
3,958,750	-		Sama_3331	0.38	-0.5
3,958,750	-		Sama_3331	0.38	-1.4
3,958,750	-		Sama_3331	0.38	-2.1
3,958,750	-		Sama_3331	0.38	-2.7
3,958,750	-		Sama_3331	0.38	-1.5
3,958,750	-		Sama_3331	0.38	-1.6
3,958,750	-		Sama_3331	0.38	-1.4
3,958,750	-		Sama_3331	0.38	-3.0
3,958,750	-		Sama_3331	0.38	-1.6
3,958,750	-		Sama_3331	0.38	-1.5
3,958,757	+		Sama_3331	0.39	-1.0
3,958,757	+		Sama_3331	0.39	-1.2
3,958,757	+		Sama_3331	0.39	-1.9
3,958,757	+		Sama_3331	0.39	-0.5
3,958,757	+		Sama_3331	0.39	-3.1
3,958,757	+		Sama_3331	0.39	-1.9
3,958,757	+		Sama_3331	0.39	+0.2
3,958,757	+		Sama_3331	0.39	-1.5
3,958,758	-		Sama_3331	0.39	-2.1
3,958,758	-		Sama_3331	0.39	+0.5
3,958,758	-		Sama_3331	0.39	-2.1
3,958,758	-		Sama_3331	0.39	-1.9
3,958,758	-		Sama_3331	0.39	-0.8
3,958,758	-		Sama_3331	0.39	-1.4
3,958,758	-		Sama_3331	0.39	-1.7
3,958,758	-		Sama_3331	0.39	-1.4
3,958,758	-		Sama_3331	0.39	-1.9
3,958,758	-		Sama_3331	0.39	-0.9
3,958,758	-		Sama_3331	0.39	-0.7
3,958,758	-		Sama_3331	0.39	-2.2
3,958,758	-		Sama_3331	0.39	-1.0
3,958,758	-		Sama_3331	0.39	-0.6
3,958,831	-		Sama_3331	0.46	-0.2
3,958,863	+		Sama_3331	0.49	-0.5
3,958,863	+		Sama_3331	0.49	-2.3
3,958,863	+		Sama_3331	0.49	-0.5
3,958,863	+		Sama_3331	0.49	-1.2
3,958,863	+		Sama_3331	0.49	-1.5
3,958,864	-		Sama_3331	0.49	-1.9
3,958,864	-		Sama_3331	0.49	-0.4
3,958,919	+		Sama_3331	0.54	-2.1
3,958,919	+		Sama_3331	0.54	-1.0
3,958,920	-		Sama_3331	0.54	-1.3
3,958,920	-		Sama_3331	0.54	-2.8
3,958,920	-		Sama_3331	0.54	-2.5
3,958,920	-		Sama_3331	0.54	-2.2
3,958,920	-		Sama_3331	0.54	-1.0
3,958,920	-		Sama_3331	0.54	-1.2
3,958,974	+		Sama_3331	0.60	-2.5
3,958,974	+		Sama_3331	0.60	-0.6
3,958,974	+		Sama_3331	0.60	-0.8
3,959,011	+		Sama_3331	0.63	-3.1
3,959,012	-		Sama_3331	0.63	-0.5
3,959,012	-		Sama_3331	0.63	-2.8
3,959,014	+		Sama_3331	0.63	-0.9
3,959,014	+		Sama_3331	0.63	-0.4
3,959,015	-		Sama_3331	0.63	-1.6
3,959,015	-		Sama_3331	0.63	-1.5
3,959,015	-		Sama_3331	0.63	-0.6
3,959,015	-		Sama_3331	0.63	-2.8
3,959,015	-		Sama_3331	0.63	+0.5
3,959,025	+		Sama_3331	0.64	-1.8
3,959,025	+		Sama_3331	0.64	-1.1
3,959,026	-		Sama_3331	0.64	-1.0
3,959,026	-		Sama_3331	0.64	+0.3
3,959,026	-		Sama_3331	0.64	-1.5
3,959,026	-		Sama_3331	0.64	-1.7
3,959,026	-		Sama_3331	0.64	-0.5
3,959,026	-		Sama_3331	0.64	-1.8
3,959,026	-		Sama_3331	0.64	-1.4
3,959,028	-		Sama_3331	0.65	-1.3
3,959,046	+		Sama_3331	0.66	-1.8
3,959,046	+		Sama_3331	0.66	-0.2
3,959,046	+		Sama_3331	0.66	-2.7
3,959,046	+		Sama_3331	0.66	-2.7
3,959,047	-		Sama_3331	0.66	-1.7
3,959,047	-		Sama_3331	0.66	-0.3
3,959,047	-		Sama_3331	0.66	-1.0
3,959,047	-		Sama_3331	0.66	-0.9
3,959,047	-		Sama_3331	0.66	-1.6
3,959,047	-		Sama_3331	0.66	-2.0
3,959,047	-		Sama_3331	0.66	-0.2
3,959,047	-		Sama_3331	0.66	-0.9
3,959,047	-		Sama_3331	0.66	-2.0
3,959,047	-		Sama_3331	0.66	-1.9
3,959,064	+		Sama_3331	0.68	+1.4
3,959,064	+		Sama_3331	0.68	-1.9
3,959,065	-		Sama_3331	0.68	-1.9
3,959,067	+		Sama_3331	0.68	+0.2
3,959,067	+		Sama_3331	0.68	-1.6
3,959,067	+		Sama_3331	0.68	-1.4
3,959,067	+		Sama_3331	0.68	-1.2
3,959,067	+		Sama_3331	0.68	-2.3
3,959,067	+		Sama_3331	0.68	-0.2
3,959,067	+		Sama_3331	0.68	-3.2
3,959,067	+		Sama_3331	0.68	-1.4
3,959,067	+		Sama_3331	0.68	-2.1
3,959,068	-		Sama_3331	0.68	-1.7
3,959,068	-		Sama_3331	0.68	-1.9
3,959,068	-		Sama_3331	0.68	+0.1
3,959,068	-		Sama_3331	0.68	-1.1
3,959,068	-		Sama_3331	0.68	-1.0
3,959,103	+		Sama_3331	0.72	+0.4
3,959,104	-		Sama_3331	0.72	-2.4
3,959,104	-		Sama_3331	0.72	-0.8
3,959,104	-		Sama_3331	0.72	-0.2
3,959,104	-		Sama_3331	0.72	-1.0
3,959,157	-		Sama_3331	0.77	-0.6
3,959,205	+		Sama_3331	0.82	-2.6
3,959,206	-		Sama_3331	0.82	-1.7
3,959,206	-		Sama_3331	0.82	-1.6
3,959,206	-		Sama_3331	0.82	-3.0
3,959,206	-		Sama_3331	0.82	-0.7
3,959,235	+		Sama_3331	0.84	-2.2
3,959,235	+		Sama_3331	0.84	-1.2
3,959,241	+		Sama_3331	0.85	-1.2
3,959,242	-		Sama_3331	0.85	-1.9
3,959,252	-		Sama_3331	0.86	-2.6
3,959,322	+				-2.4
3,959,322	+				-3.4
3,959,322	+				-3.1
3,959,322	+				-0.7
3,959,322	+				-2.9
3,959,322	+				-4.2
3,959,323	-				-1.3
3,959,323	-				-1.4
3,959,323	-				-1.4
3,959,326	+				-2.0
3,959,326	+				-1.8
3,959,327	-				-0.2
3,959,327	-				-0.5
3,959,327	-				-1.8
3,959,327	-				-2.1
3,959,327	-				+0.2
3,959,327	-				-1.3
3,959,327	-				-2.4
3,959,327	-				-1.2
3,959,327	-				-1.0
3,959,370	+				-0.1
3,959,370	+				-1.4
3,959,371	-				-2.1
3,959,371	-				-0.2
3,959,371	-				-1.5
3,959,371	-				-3.0
3,959,374	+				-2.1
3,959,375	-				-1.5
3,959,409	+				-1.7
3,959,409	+				-0.9
3,959,409	+				+0.8
3,959,409	+				-3.0
3,959,409	+				-0.5
3,959,409	+				-2.0
3,959,410	-				+0.5
3,959,410	-				-1.8
3,959,497	+				-1.4
3,959,497	+				-0.4
3,959,497	+				-0.9
3,959,497	+				-1.1
3,959,497	+				-2.1
3,959,497	+				-1.9
3,959,498	-				+0.1
3,959,498	-				-1.1
3,959,499	+				-1.6
3,959,499	+				-1.9
3,959,499	+				-0.2
3,959,499	+				-0.4
3,959,499	+				-1.2
3,959,499	+				-2.1
3,959,499	+				-0.5
3,959,499	+				+1.1
3,959,500	-				-0.2
3,959,513	+				-2.0
3,959,576	-				+0.3
3,959,657	+		Sama_3332	0.22	+0.4
3,959,657	+		Sama_3332	0.22	-0.1
3,959,657	+		Sama_3332	0.22	-0.3
3,959,658	-		Sama_3332	0.22	-0.1
3,959,659	+		Sama_3332	0.23	+0.4
3,959,659	+		Sama_3332	0.23	-0.0
3,959,756	+		Sama_3332	0.51	+0.5
3,959,756	+		Sama_3332	0.51	-1.0
3,959,756	+		Sama_3332	0.51	-1.2
3,959,757	-		Sama_3332	0.51	+0.2
3,959,757	-		Sama_3332	0.51	-1.2
3,959,757	-		Sama_3332	0.51	+0.1
3,959,757	-		Sama_3332	0.51	-0.1
3,959,757	-		Sama_3332	0.51	+0.3
3,959,762	-		Sama_3332	0.52	+0.3
3,959,762	-		Sama_3332	0.52	-0.2
3,959,762	-		Sama_3332	0.52	-0.8
3,959,762	-		Sama_3332	0.52	+0.6
3,959,776	+		Sama_3332	0.56	+0.5
3,959,776	+		Sama_3332	0.56	+0.2
3,959,776	+		Sama_3332	0.56	-1.2
3,959,776	+		Sama_3332	0.56	-0.0
3,959,776	+		Sama_3332	0.56	+0.1
3,959,776	+		Sama_3332	0.56	-0.7
3,959,776	+		Sama_3332	0.56	-0.8
3,959,776	+		Sama_3332	0.56	-0.4
3,959,776	+		Sama_3332	0.56	-0.5
3,959,776	+		Sama_3332	0.56	-0.1
3,959,776	+		Sama_3332	0.56	-0.3
3,959,776	+		Sama_3332	0.56	+0.2
3,959,776	+		Sama_3332	0.56	+0.1
3,959,776	+		Sama_3332	0.56	-1.0
3,959,776	+		Sama_3332	0.56	-0.5
3,959,776	+		Sama_3332	0.56	-1.0
3,959,776	+		Sama_3332	0.56	+0.7
3,959,777	-		Sama_3332	0.57	+0.3
3,959,777	-		Sama_3332	0.57	-0.0
3,959,777	-		Sama_3332	0.57	-0.7
3,959,777	-		Sama_3332	0.57	+0.4
3,959,777	-		Sama_3332	0.57	+0.1
3,959,777	-		Sama_3332	0.57	-1.3
3,959,777	-		Sama_3332	0.57	+0.2
3,959,777	-		Sama_3332	0.57	-1.7
3,959,777	-		Sama_3332	0.57	-0.6
3,959,777	-		Sama_3332	0.57	-1.5
3,959,777	-		Sama_3332	0.57	-0.6
3,959,777	-		Sama_3332	0.57	+0.1
3,959,777	-		Sama_3332	0.57	+0.3
3,959,777	-		Sama_3332	0.57	-2.5
3,959,777	-		Sama_3332	0.57	+0.1
3,959,777	-		Sama_3332	0.57	+2.3
3,959,825	-		Sama_3332	0.70	+2.0
3,959,828	-		Sama_3332	0.71	-1.4
3,959,847	+		Sama_3332	0.77	-0.4
3,959,848	-		Sama_3332	0.77	-0.1
3,959,848	-		Sama_3332	0.77	+0.4
3,959,911	+				-2.3
3,959,911	+				-0.8
3,959,912	-				-0.4
3,959,912	-				-1.2
3,959,968	-				-0.8
3,959,968	-				+0.3
3,960,011	+				-0.3
3,960,012	-				+1.2
3,960,020	-				-1.7
3,960,035	-				+1.1
3,960,035	-				-1.2
3,960,035	-				+0.1
3,960,062	+				-1.0
3,960,078	-				+1.0
3,960,096	-				-0.7
3,960,128	+				-2.0
3,960,129	-				-0.2
3,960,165	+				-2.0
3,960,208	+				-1.6
3,960,214	+				-0.8
3,960,292	+				-0.1
3,960,292	+				+0.5
3,960,293	-				-1.9
3,960,293	-				-1.5
3,960,293	-				-0.5
3,960,343	-		Sama_3333	0.46	+0.4
3,960,343	-		Sama_3333	0.46	+0.2
3,960,368	-		Sama_3333	0.70	-1.9
3,960,376	+		Sama_3333	0.77	-0.2
3,960,426	+				-1.5
3,960,426	+				-0.2
3,960,427	-				-0.2
3,960,427	-				-0.5
3,960,427	-				+0.2
3,960,445	+				-1.9
3,960,466	-				-0.5
3,960,499	+				-3.4
3,960,499	+				-1.0
3,960,563	+				-2.0
3,960,577	-				-1.7
3,960,583	+				-1.4
3,960,621	-				-0.0
3,960,698	+				-1.4
3,960,698	+				-1.4
3,960,698	+				+0.8
3,960,698	+				+0.2
3,960,698	+				+0.1
3,960,699	-				+0.4
3,960,701	+				+0.3
3,960,702	-				-0.5
3,960,745	-				+1.0
3,960,803	+				+0.5
3,960,815	+				-1.0
3,960,879	+		Sama_3334	0.12	-1.2