Strain Fitness in Shewanella amazonensis SB2B around Sama_3291

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,909,875	+				-0.6
3,909,891	-				-3.8
3,909,895	+				-1.8
3,909,895	+				-1.7
3,909,895	+				-1.8
3,909,895	+				-2.5
3,909,895	+				-1.2
3,909,895	+				+0.8
3,909,895	+				-1.1
3,909,896	-				-2.9
3,909,896	-				-2.6
3,909,896	-				-1.5
3,909,896	-				-1.5
3,909,896	-				-1.7
3,909,919	+				-2.2
3,909,920	-				-1.9
3,909,920	-				-2.7
3,909,920	-				-2.2
3,909,920	-				-0.6
3,909,980	+				-1.9
3,909,980	+				-1.8
3,909,980	+				-1.9
3,909,980	+				-2.8
3,909,980	+				+0.2
3,909,980	+				-1.7
3,909,981	-				+0.4
3,910,004	+				-1.5
3,910,024	+		Sama_3290	0.11	-2.1
3,910,025	-		Sama_3290	0.11	-1.4
3,910,148	-		Sama_3290	0.24	-0.6
3,910,182	+		Sama_3290	0.28	-0.8
3,910,182	+		Sama_3290	0.28	-3.6
3,910,182	+		Sama_3290	0.28	-1.3
3,910,182	+		Sama_3290	0.28	-2.3
3,910,182	+		Sama_3290	0.28	-1.7
3,910,182	+		Sama_3290	0.28	-2.6
3,910,182	+		Sama_3290	0.28	+0.2
3,910,182	+		Sama_3290	0.28	-1.0
3,910,183	-		Sama_3290	0.28	-0.6
3,910,183	-		Sama_3290	0.28	-2.7
3,910,184	+		Sama_3290	0.28	-2.6
3,910,184	+		Sama_3290	0.28	-2.1
3,910,184	+		Sama_3290	0.28	-2.6
3,910,184	+		Sama_3290	0.28	-2.2
3,910,184	+		Sama_3290	0.28	-2.5
3,910,185	-		Sama_3290	0.28	+0.8
3,910,185	-		Sama_3290	0.28	+0.2
3,910,185	-		Sama_3290	0.28	-1.8
3,910,185	-		Sama_3290	0.28	-1.8
3,910,185	-		Sama_3290	0.28	-1.7
3,910,185	-		Sama_3290	0.28	-0.8
3,910,235	+		Sama_3290	0.34	-2.8
3,910,290	+		Sama_3290	0.40	-0.5
3,910,290	+		Sama_3290	0.40	-0.2
3,910,290	+		Sama_3290	0.40	-2.9
3,910,290	+		Sama_3290	0.40	-2.4
3,910,290	+		Sama_3290	0.40	-2.0
3,910,290	+		Sama_3290	0.40	+0.8
3,910,291	-		Sama_3290	0.40	+0.5
3,910,291	-		Sama_3290	0.40	-2.6
3,910,291	-		Sama_3290	0.40	-2.9
3,910,291	-		Sama_3290	0.40	-0.8
3,910,291	-		Sama_3290	0.40	-2.8
3,910,291	-		Sama_3290	0.40	-1.1
3,910,291	-		Sama_3290	0.40	-3.9
3,910,291	-		Sama_3290	0.40	-3.3
3,910,337	+		Sama_3290	0.45	-1.0
3,910,337	+		Sama_3290	0.45	-1.6
3,910,338	-		Sama_3290	0.45	-1.0
3,910,347	+		Sama_3290	0.46	-3.1
3,910,403	-		Sama_3290	0.52	-1.6
3,910,447	+		Sama_3290	0.57	-2.0
3,910,447	+		Sama_3290	0.57	-1.2
3,910,447	+		Sama_3290	0.57	-1.4
3,910,447	+		Sama_3290	0.57	+0.5
3,910,602	+		Sama_3290	0.74	-0.5
3,910,602	+		Sama_3290	0.74	-0.9
3,910,602	+		Sama_3290	0.74	-2.6
3,910,602	+		Sama_3290	0.74	-1.1
3,910,603	-		Sama_3290	0.74	-2.9
3,910,605	+		Sama_3290	0.74	-1.5
3,910,637	+		Sama_3290	0.77	-1.2
3,910,637	+		Sama_3290	0.77	-0.8
3,910,638	-		Sama_3290	0.78	+0.2
3,910,638	-		Sama_3290	0.78	-1.4
3,910,710	+		Sama_3290	0.85	-1.6
3,910,710	+		Sama_3290	0.85	-3.5
3,910,710	+		Sama_3290	0.85	-3.1
3,910,710	+		Sama_3290	0.85	-0.9
3,910,711	-		Sama_3290	0.85	-1.6
3,910,814	-				-2.0
3,910,843	-				-1.0
3,910,874	+				+0.6
3,910,881	+				+1.1
3,910,894	-				-1.2
3,911,001	+		Sama_3291	0.17	-1.6
3,911,001	+		Sama_3291	0.17	-1.7
3,911,001	+		Sama_3291	0.17	+1.8
3,911,101	+		Sama_3291	0.28	-0.8
3,911,101	+		Sama_3291	0.28	-1.0
3,911,101	+		Sama_3291	0.28	-0.6
3,911,102	-		Sama_3291	0.28	+1.8
3,911,111	+		Sama_3291	0.29	-2.3
3,911,111	+		Sama_3291	0.29	-0.2
3,911,111	+		Sama_3291	0.29	-2.3
3,911,111	+		Sama_3291	0.29	-0.6
3,911,112	-		Sama_3291	0.29	-1.8
3,911,152	+		Sama_3291	0.33	-0.8
3,911,152	+		Sama_3291	0.33	+0.2
3,911,152	+		Sama_3291	0.33	-1.7
3,911,152	+		Sama_3291	0.33	-2.6
3,911,152	+		Sama_3291	0.33	-0.6
3,911,152	+		Sama_3291	0.33	+0.2
3,911,152	+		Sama_3291	0.33	-2.4
3,911,153	-		Sama_3291	0.34	+1.8
3,911,153	-		Sama_3291	0.34	-0.9
3,911,153	-		Sama_3291	0.34	-1.4
3,911,153	-		Sama_3291	0.34	-1.6
3,911,153	-		Sama_3291	0.34	+0.2
3,911,153	-		Sama_3291	0.34	-1.9
3,911,153	-		Sama_3291	0.34	-0.8
3,911,153	-		Sama_3291	0.34	-1.0
3,911,154	+		Sama_3291	0.34	-0.6
3,911,154	+		Sama_3291	0.34	-1.7
3,911,209	+		Sama_3291	0.39	-1.6
3,911,209	+		Sama_3291	0.39	-1.8
3,911,210	-		Sama_3291	0.40	-1.6
3,911,210	-		Sama_3291	0.40	-0.6
3,911,256	+		Sama_3291	0.44	-2.9
3,911,257	-		Sama_3291	0.45	-2.3
3,911,265	+		Sama_3291	0.45	+0.2
3,911,374	+		Sama_3291	0.57	-0.6
3,911,374	+		Sama_3291	0.57	-0.8
3,911,374	+		Sama_3291	0.57	+1.8
3,911,374	+		Sama_3291	0.57	-1.4
3,911,374	+		Sama_3291	0.57	-0.8
3,911,374	+		Sama_3291	0.57	-0.6
3,911,374	+		Sama_3291	0.57	-1.7
3,911,375	-		Sama_3291	0.57	-1.0
3,911,375	-		Sama_3291	0.57	-0.8
3,911,375	-		Sama_3291	0.57	-1.7
3,911,375	-		Sama_3291	0.57	-1.4
3,911,375	-		Sama_3291	0.57	-2.4
3,911,375	-		Sama_3291	0.57	-0.8
3,911,375	-		Sama_3291	0.57	-0.6
3,911,435	-		Sama_3291	0.63	-0.8
3,911,435	-		Sama_3291	0.63	-2.0
3,911,524	+		Sama_3291	0.73	+0.2
3,911,549	+		Sama_3291	0.76	+0.8
3,911,550	-		Sama_3291	0.76	-0.6
3,911,558	+		Sama_3291	0.77	+0.2
3,911,558	+		Sama_3291	0.77	-1.6
3,911,558	+		Sama_3291	0.77	-2.2
3,911,559	-		Sama_3291	0.77	-0.6
3,911,594	+		Sama_3291	0.80	-1.9
3,911,595	-		Sama_3291	0.80	+0.1
3,911,595	-		Sama_3291	0.80	-0.8
3,911,717	+				+0.2
3,911,717	+				-0.8
3,911,718	-				-0.8
3,911,750	-				-1.9
3,911,750	-				-0.5
3,911,803	+				-1.4
3,911,803	+				+0.1
3,911,804	-				-1.0
3,911,804	-				-0.6
3,911,804	-				+0.3
3,911,807	+				+1.0
3,911,807	+				-1.6
3,911,808	-				-0.9
3,911,808	-				-0.1
3,911,808	-				+0.9
3,911,860	+				+0.7
3,911,860	+				-0.6
3,911,860	+				-1.4
3,911,861	-				+1.2
3,911,861	-				-2.0
3,911,862	-				-0.2
3,911,871	-				-2.1
3,911,897	+				-0.4
3,911,913	+				-2.2
3,911,914	-				-1.4
3,911,914	-				-2.9
3,911,914	-				-0.9
3,911,916	+				-0.4
3,911,916	+				+0.1
3,911,916	+				+1.6
3,911,916	+				+0.3
3,911,916	+				-0.2
3,911,916	+				+1.1
3,911,916	+				+0.2
3,911,916	+				-0.1
3,911,916	+				+0.2
3,911,916	+				-0.3
3,911,916	+				+0.1
3,911,917	-				+0.4
3,911,917	-				+1.0
3,911,917	-				-1.4
3,911,917	-				+0.2
3,911,917	-				-0.7
3,911,917	-				+1.2
3,911,917	-				+0.6
3,911,917	-				-1.4
3,911,917	-				-1.1
3,911,921	+				+0.3
3,911,921	+				+0.2
3,911,921	+				+0.4
3,911,921	+				-1.7
3,911,921	+				+0.4
3,911,921	+				-0.6
3,911,921	+				+0.8
3,911,922	-				-0.4
3,911,922	-				+0.0
3,911,922	-				+1.2
3,911,923	+				+1.2
3,911,923	+				+1.2
3,911,923	+				-1.3
3,911,923	+				-0.2
3,911,924	-				+0.2
3,911,959	+				+0.2
3,911,959	+				-0.0
3,911,959	+				+0.8
3,911,991	+				-1.1
3,912,008	+				+1.0
3,912,008	+				+0.3
3,912,009	-				-0.4
3,912,127	+				+0.5
3,912,128	-				+0.2
3,912,128	-				-1.9
3,912,156	+				-0.8
3,912,157	-				-0.5
3,912,171	+				+2.0
3,912,171	+				+2.3
3,912,171	+				-1.0
3,912,171	+				+0.9
3,912,171	+				+0.1
3,912,171	+				+1.3
3,912,171	+				+2.6
3,912,171	+				-1.8
3,912,171	+				+1.8
3,912,171	+				-0.3
3,912,171	+				-0.2
3,912,171	+				-0.8
3,912,171	+				+0.8
3,912,171	+				-1.8
3,912,171	+				-0.5
3,912,171	+				+0.5
3,912,171	+				+0.4
3,912,171	+				-0.8
3,912,171	+				+2.2
3,912,171	+				+0.2
3,912,171	+				+0.3
3,912,171	+				-0.1
3,912,172	-				-2.1
3,912,172	-				-0.7
3,912,172	-				+0.6
3,912,172	-				+0.8
3,912,172	-				+1.2
3,912,172	-				-1.4
3,912,172	-				+1.1
3,912,172	-				-0.2
3,912,172	-				-0.8
3,912,172	-				+0.2
3,912,172	-				+0.1
3,912,172	-				+2.3
3,912,172	-				+0.1
3,912,172	-				+1.0
3,912,172	-				+0.7
3,912,172	-				+0.1
3,912,173	+				+0.4
3,912,173	+				-2.1
3,912,173	+				-0.8
3,912,173	+				-1.6
3,912,173	+				-0.4
3,912,173	+				+0.1
3,912,174	-				-0.4
3,912,174	-				-0.3
3,912,174	-				-0.6
3,912,174	-				-1.7
3,912,174	-				-0.6
3,912,174	-				+0.4
3,912,175	+				-0.2
3,912,175	+				-0.5
3,912,175	+				-0.6
3,912,175	+				+0.4
3,912,175	+				+0.3
3,912,175	+				+1.3
3,912,175	+				-1.2
3,912,175	+				-0.8
3,912,176	-				+0.1
3,912,176	-				-0.9
3,912,176	-				-1.3
3,912,176	-				+0.4
3,912,176	-				-0.9
3,912,176	-				-1.4
3,912,185	+				+1.8
3,912,185	+				-0.6
3,912,186	-				+0.7
3,912,186	-				-0.6
3,912,186	-				+1.0
3,912,228	-				+0.2
3,912,246	+				+1.3
3,912,247	-				+0.4
3,912,251	+				-0.1
3,912,251	+				+0.3
3,912,252	-				+0.3
3,912,252	-				+0.8
3,912,252	-				+0.8
3,912,252	-				-0.9
3,912,252	-				-0.3
3,912,252	-				-0.4
3,912,252	-				-0.7
3,912,252	-				-1.5
3,912,252	-				+0.6
3,912,252	-				-1.0
3,912,252	-				-0.4
3,912,252	-				+1.6
3,912,252	-				+0.5
3,912,252	-				+0.2
3,912,253	+				-0.2
3,912,253	+				+0.5
3,912,253	+				+0.4
3,912,253	+				+0.6
3,912,253	+				-0.5
3,912,254	-				-1.7
3,912,254	-				-0.0
3,912,254	-				+0.3
3,912,258	+				-0.2
3,912,258	+				+0.5
3,912,258	+				+0.8
3,912,258	+				+0.8
3,912,258	+				+0.2
3,912,258	+				+0.2
3,912,258	+				-0.2
3,912,258	+				-0.0
3,912,258	+				-2.1
3,912,259	-				+0.1
3,912,259	-				-0.7
3,912,259	-				-1.2
3,912,259	-				-0.7
3,912,259	-				-0.0
3,912,259	-				+0.2
3,912,259	-				-0.5
3,912,259	-				-0.1
3,912,259	-				+0.6
3,912,259	-				+0.7
3,912,259	-				-0.8
3,912,259	-				+0.9
3,912,259	-				+0.8
3,912,259	-				+0.8
3,912,260	+				-0.6
3,912,272	+				+0.3
3,912,341	+				+2.0
3,912,341	+				-2.2
3,912,341	+				-1.0
3,912,341	+				-0.1
3,912,341	+				-0.2
3,912,342	-				-1.0
3,912,373	+				-0.6
3,912,373	+				+0.3
3,912,373	+				+0.3
3,912,373	+				+0.0
3,912,374	-				+1.1
3,912,374	-				-1.0
3,912,374	-				-0.4
3,912,374	-				-0.9
3,912,374	-				-2.5
3,912,374	-				-1.5
3,912,374	-				-1.1
3,912,374	-				+0.6
3,912,377	+				-0.5
3,912,377	+				-0.1
3,912,377	+				-1.0
3,912,377	+				-1.6
3,912,377	+				+0.6
3,912,378	-				-0.8
3,912,378	-				+1.2
3,912,378	-				-0.4
3,912,378	-				-0.2
3,912,378	-				-1.7
3,912,378	-				+0.4
3,912,378	-				-0.4
3,912,399	+				+0.0
3,912,399	+				-0.6
3,912,399	+				-1.2
3,912,399	+				-0.8
3,912,399	+				-0.4
3,912,399	+				-0.8
3,912,399	+				-1.9
3,912,400	-				-0.1
3,912,400	-				-0.6
3,912,400	-				-0.5
3,912,401	+				+1.8
3,912,401	+				-0.8
3,912,401	+				+0.0
3,912,402	-				+3.1
3,912,411	+				-1.7
3,912,424	+				+0.4
3,912,424	+				-0.8
3,912,425	-				-0.6
3,912,452	-				-1.7
3,912,460	+				+0.2
3,912,461	-				+0.5
3,912,461	-				-0.4
3,912,464	+				-0.2
3,912,464	+				+1.4
3,912,465	-				-1.7
3,912,467	-				+0.0
3,912,548	+				-0.6
3,912,548	+				+0.0
3,912,555	+		Sama_3292	0.11	-1.8
3,912,565	+		Sama_3292	0.13	+0.4
3,912,565	+		Sama_3292	0.13	-1.0
3,912,565	+		Sama_3292	0.13	-1.0
3,912,565	+		Sama_3292	0.13	-0.9
3,912,565	+		Sama_3292	0.13	-1.4
3,912,565	+		Sama_3292	0.13	-1.0
3,912,565	+		Sama_3292	0.13	-0.7
3,912,565	+		Sama_3292	0.13	+1.6
3,912,566	-		Sama_3292	0.13	-0.0
3,912,566	-		Sama_3292	0.13	+0.8
3,912,566	-		Sama_3292	0.13	-1.5
3,912,566	-		Sama_3292	0.13	-0.1
3,912,566	-		Sama_3292	0.13	-0.8
3,912,594	+		Sama_3292	0.19	-0.5
3,912,595	-		Sama_3292	0.19	-0.2
3,912,638	+		Sama_3292	0.28	-1.6
3,912,639	-		Sama_3292	0.29	-1.5
3,912,639	-		Sama_3292	0.29	-0.8
3,912,639	-		Sama_3292	0.29	-0.8
3,912,715	+		Sama_3292	0.44	+0.1