Strain Fitness in Shewanella amazonensis SB2B around Sama_3290

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,908,930	+				+0.8
3,909,053	+		Sama_3289	0.20	+0.8
3,909,053	+		Sama_3289	0.20	+0.0
3,909,053	+		Sama_3289	0.20	+0.6
3,909,053	+		Sama_3289	0.20	+0.5
3,909,053	+		Sama_3289	0.20	+0.9
3,909,054	-		Sama_3289	0.20	+0.7
3,909,054	-		Sama_3289	0.20	-0.4
3,909,179	+		Sama_3289	0.35	+0.8
3,909,179	+		Sama_3289	0.35	+0.2
3,909,179	+		Sama_3289	0.35	-1.5
3,909,179	+		Sama_3289	0.35	-0.4
3,909,180	-		Sama_3289	0.35	+0.4
3,909,180	-		Sama_3289	0.35	+0.3
3,909,180	-		Sama_3289	0.35	-0.6
3,909,180	-		Sama_3289	0.35	+1.3
3,909,180	-		Sama_3289	0.35	-0.5
3,909,180	-		Sama_3289	0.35	-0.0
3,909,180	-		Sama_3289	0.35	+1.4
3,909,180	-		Sama_3289	0.35	-0.1
3,909,200	+		Sama_3289	0.37	-0.0
3,909,200	+		Sama_3289	0.37	+0.1
3,909,200	+		Sama_3289	0.37	-0.0
3,909,200	+		Sama_3289	0.37	+0.2
3,909,200	+		Sama_3289	0.37	+0.4
3,909,200	+		Sama_3289	0.37	-1.4
3,909,201	-		Sama_3289	0.38	-2.1
3,909,201	-		Sama_3289	0.38	-1.1
3,909,201	-		Sama_3289	0.38	-0.9
3,909,201	-		Sama_3289	0.38	+0.4
3,909,201	-		Sama_3289	0.38	-0.5
3,909,201	-		Sama_3289	0.38	+1.8
3,909,206	+		Sama_3289	0.38	-0.2
3,909,206	+		Sama_3289	0.38	-2.9
3,909,206	+		Sama_3289	0.38	+0.1
3,909,206	+		Sama_3289	0.38	-0.0
3,909,207	-		Sama_3289	0.38	-0.8
3,909,207	-		Sama_3289	0.38	-0.2
3,909,234	+		Sama_3289	0.41	-1.6
3,909,234	+		Sama_3289	0.41	-1.5
3,909,234	+		Sama_3289	0.41	-1.2
3,909,234	+		Sama_3289	0.41	+0.2
3,909,234	+		Sama_3289	0.41	-0.1
3,909,234	+		Sama_3289	0.41	+0.8
3,909,234	+		Sama_3289	0.41	+0.6
3,909,235	-		Sama_3289	0.41	+0.2
3,909,235	-		Sama_3289	0.41	+1.2
3,909,235	-		Sama_3289	0.41	-1.4
3,909,235	-		Sama_3289	0.41	-0.2
3,909,235	-		Sama_3289	0.41	+1.3
3,909,314	+		Sama_3289	0.51	-0.2
3,909,314	+		Sama_3289	0.51	+0.4
3,909,340	+		Sama_3289	0.54	+0.2
3,909,340	+		Sama_3289	0.54	-1.6
3,909,341	-		Sama_3289	0.54	+0.4
3,909,341	-		Sama_3289	0.54	-0.1
3,909,365	-		Sama_3289	0.57	+0.5
3,909,404	+		Sama_3289	0.61	-0.4
3,909,404	+		Sama_3289	0.61	+0.2
3,909,404	+		Sama_3289	0.61	+0.8
3,909,404	+		Sama_3289	0.61	+0.2
3,909,405	-		Sama_3289	0.61	+0.6
3,909,405	-		Sama_3289	0.61	+0.8
3,909,405	-		Sama_3289	0.61	+0.8
3,909,405	-		Sama_3289	0.61	-0.6
3,909,405	-		Sama_3289	0.61	-1.0
3,909,407	+		Sama_3289	0.61	-0.5
3,909,407	+		Sama_3289	0.61	+0.5
3,909,407	+		Sama_3289	0.61	-0.6
3,909,407	+		Sama_3289	0.61	-0.3
3,909,407	+		Sama_3289	0.61	-0.3
3,909,408	-		Sama_3289	0.62	-0.7
3,909,408	-		Sama_3289	0.62	-1.1
3,909,408	-		Sama_3289	0.62	+0.4
3,909,408	-		Sama_3289	0.62	+0.2
3,909,408	-		Sama_3289	0.62	-2.5
3,909,411	+		Sama_3289	0.62	-0.2
3,909,411	+		Sama_3289	0.62	-2.3
3,909,411	+		Sama_3289	0.62	+0.1
3,909,412	-		Sama_3289	0.62	+0.6
3,909,412	-		Sama_3289	0.62	+0.2
3,909,443	+		Sama_3289	0.66	-1.5
3,909,443	+		Sama_3289	0.66	-0.7
3,909,443	+		Sama_3289	0.66	-0.4
3,909,444	-		Sama_3289	0.66	+1.1
3,909,538	+		Sama_3289	0.77	-0.2
3,909,539	-		Sama_3289	0.77	-1.1
3,909,558	+		Sama_3289	0.79	-1.4
3,909,558	+		Sama_3289	0.79	-1.7
3,909,558	+		Sama_3289	0.79	+0.0
3,909,558	+		Sama_3289	0.79	+0.2
3,909,558	+		Sama_3289	0.79	-0.1
3,909,558	+		Sama_3289	0.79	-2.1
3,909,558	+		Sama_3289	0.79	-0.8
3,909,558	+		Sama_3289	0.79	+0.6
3,909,558	+		Sama_3289	0.79	+1.4
3,909,558	+		Sama_3289	0.79	-0.6
3,909,559	-		Sama_3289	0.79	-1.1
3,909,559	-		Sama_3289	0.79	+0.7
3,909,559	-		Sama_3289	0.79	-0.6
3,909,559	-		Sama_3289	0.79	+0.8
3,909,559	-		Sama_3289	0.79	+0.9
3,909,559	-		Sama_3289	0.79	-0.8
3,909,559	-		Sama_3289	0.79	+0.6
3,909,559	-		Sama_3289	0.79	-1.9
3,909,559	-		Sama_3289	0.79	-0.8
3,909,578	+		Sama_3289	0.81	-1.0
3,909,578	+		Sama_3289	0.81	+0.4
3,909,578	+		Sama_3289	0.81	+0.8
3,909,578	+		Sama_3289	0.81	-1.1
3,909,579	-		Sama_3289	0.81	+0.4
3,909,579	-		Sama_3289	0.81	-0.1
3,909,579	-		Sama_3289	0.81	+0.1
3,909,579	-		Sama_3289	0.81	+1.2
3,909,579	-		Sama_3289	0.81	+0.3
3,909,579	-		Sama_3289	0.81	+0.7
3,909,579	-		Sama_3289	0.81	-0.6
3,909,579	-		Sama_3289	0.81	-1.6
3,909,579	-		Sama_3289	0.81	+0.6
3,909,679	-				-0.6
3,909,755	+				+0.3
3,909,755	+				+0.3
3,909,755	+				-0.6
3,909,755	+				+0.1
3,909,756	-				+0.6
3,909,773	+				+0.4
3,909,773	+				+0.2
3,909,777	+				-0.6
3,909,777	+				-1.0
3,909,777	+				+0.2
3,909,777	+				-0.9
3,909,777	+				-1.2
3,909,777	+				-0.4
3,909,777	+				-1.4
3,909,778	-				-1.2
3,909,778	-				+1.3
3,909,778	-				-0.0
3,909,778	-				+0.1
3,909,778	-				+0.7
3,909,778	-				-0.4
3,909,781	+				-0.7
3,909,782	-				+0.4
3,909,793	-				-1.3
3,909,831	-				+0.2
3,909,836	+				-1.6
3,909,836	+				-0.8
3,909,875	+				-0.6
3,909,891	-				-3.8
3,909,895	+				-1.8
3,909,895	+				-1.7
3,909,895	+				-1.8
3,909,895	+				-2.5
3,909,895	+				-1.2
3,909,895	+				+0.8
3,909,895	+				-1.1
3,909,896	-				-2.9
3,909,896	-				-2.6
3,909,896	-				-1.5
3,909,896	-				-1.5
3,909,896	-				-1.7
3,909,919	+				-2.2
3,909,920	-				-1.9
3,909,920	-				-2.7
3,909,920	-				-2.2
3,909,920	-				-0.6
3,909,980	+				-1.9
3,909,980	+				-1.8
3,909,980	+				-1.9
3,909,980	+				-2.8
3,909,980	+				+0.2
3,909,980	+				-1.7
3,909,981	-				+0.4
3,910,004	+				-1.5
3,910,024	+		Sama_3290	0.11	-2.1
3,910,025	-		Sama_3290	0.11	-1.4
3,910,148	-		Sama_3290	0.24	-0.6
3,910,182	+		Sama_3290	0.28	-0.8
3,910,182	+		Sama_3290	0.28	-3.6
3,910,182	+		Sama_3290	0.28	-1.3
3,910,182	+		Sama_3290	0.28	-2.3
3,910,182	+		Sama_3290	0.28	-1.7
3,910,182	+		Sama_3290	0.28	-2.6
3,910,182	+		Sama_3290	0.28	+0.2
3,910,182	+		Sama_3290	0.28	-1.0
3,910,183	-		Sama_3290	0.28	-0.6
3,910,183	-		Sama_3290	0.28	-2.7
3,910,184	+		Sama_3290	0.28	-2.6
3,910,184	+		Sama_3290	0.28	-2.1
3,910,184	+		Sama_3290	0.28	-2.6
3,910,184	+		Sama_3290	0.28	-2.2
3,910,184	+		Sama_3290	0.28	-2.5
3,910,185	-		Sama_3290	0.28	+0.8
3,910,185	-		Sama_3290	0.28	+0.2
3,910,185	-		Sama_3290	0.28	-1.8
3,910,185	-		Sama_3290	0.28	-1.8
3,910,185	-		Sama_3290	0.28	-1.7
3,910,185	-		Sama_3290	0.28	-0.8
3,910,235	+		Sama_3290	0.34	-2.8
3,910,290	+		Sama_3290	0.40	-0.5
3,910,290	+		Sama_3290	0.40	-0.2
3,910,290	+		Sama_3290	0.40	-2.9
3,910,290	+		Sama_3290	0.40	-2.4
3,910,290	+		Sama_3290	0.40	-2.0
3,910,290	+		Sama_3290	0.40	+0.8
3,910,291	-		Sama_3290	0.40	+0.5
3,910,291	-		Sama_3290	0.40	-2.6
3,910,291	-		Sama_3290	0.40	-2.9
3,910,291	-		Sama_3290	0.40	-0.8
3,910,291	-		Sama_3290	0.40	-2.8
3,910,291	-		Sama_3290	0.40	-1.1
3,910,291	-		Sama_3290	0.40	-3.9
3,910,291	-		Sama_3290	0.40	-3.3
3,910,337	+		Sama_3290	0.45	-1.0
3,910,337	+		Sama_3290	0.45	-1.6
3,910,338	-		Sama_3290	0.45	-1.0
3,910,347	+		Sama_3290	0.46	-3.1
3,910,403	-		Sama_3290	0.52	-1.6
3,910,447	+		Sama_3290	0.57	-2.0
3,910,447	+		Sama_3290	0.57	-1.2
3,910,447	+		Sama_3290	0.57	-1.4
3,910,447	+		Sama_3290	0.57	+0.5
3,910,602	+		Sama_3290	0.74	-0.5
3,910,602	+		Sama_3290	0.74	-0.9
3,910,602	+		Sama_3290	0.74	-2.6
3,910,602	+		Sama_3290	0.74	-1.1
3,910,603	-		Sama_3290	0.74	-2.9
3,910,605	+		Sama_3290	0.74	-1.5
3,910,637	+		Sama_3290	0.77	-1.2
3,910,637	+		Sama_3290	0.77	-0.8
3,910,638	-		Sama_3290	0.78	+0.2
3,910,638	-		Sama_3290	0.78	-1.4
3,910,710	+		Sama_3290	0.85	-1.6
3,910,710	+		Sama_3290	0.85	-3.5
3,910,710	+		Sama_3290	0.85	-3.1
3,910,710	+		Sama_3290	0.85	-0.9
3,910,711	-		Sama_3290	0.85	-1.6
3,910,814	-				-2.0
3,910,843	-				-1.0
3,910,874	+				+0.6
3,910,881	+				+1.1
3,910,894	-				-1.2
3,911,001	+		Sama_3291	0.17	-1.6
3,911,001	+		Sama_3291	0.17	-1.7
3,911,001	+		Sama_3291	0.17	+1.8
3,911,101	+		Sama_3291	0.28	-0.8
3,911,101	+		Sama_3291	0.28	-1.0
3,911,101	+		Sama_3291	0.28	-0.6
3,911,102	-		Sama_3291	0.28	+1.8
3,911,111	+		Sama_3291	0.29	-2.3
3,911,111	+		Sama_3291	0.29	-0.2
3,911,111	+		Sama_3291	0.29	-2.3
3,911,111	+		Sama_3291	0.29	-0.6
3,911,112	-		Sama_3291	0.29	-1.8
3,911,152	+		Sama_3291	0.33	-0.8
3,911,152	+		Sama_3291	0.33	+0.2
3,911,152	+		Sama_3291	0.33	-1.7
3,911,152	+		Sama_3291	0.33	-2.6
3,911,152	+		Sama_3291	0.33	-0.6
3,911,152	+		Sama_3291	0.33	+0.2
3,911,152	+		Sama_3291	0.33	-2.4
3,911,153	-		Sama_3291	0.34	+1.8
3,911,153	-		Sama_3291	0.34	-0.9
3,911,153	-		Sama_3291	0.34	-1.4
3,911,153	-		Sama_3291	0.34	-1.6
3,911,153	-		Sama_3291	0.34	+0.2
3,911,153	-		Sama_3291	0.34	-1.9
3,911,153	-		Sama_3291	0.34	-0.8
3,911,153	-		Sama_3291	0.34	-1.0
3,911,154	+		Sama_3291	0.34	-0.6
3,911,154	+		Sama_3291	0.34	-1.7
3,911,209	+		Sama_3291	0.39	-1.6
3,911,209	+		Sama_3291	0.39	-1.8
3,911,210	-		Sama_3291	0.40	-1.6
3,911,210	-		Sama_3291	0.40	-0.6
3,911,256	+		Sama_3291	0.44	-2.9
3,911,257	-		Sama_3291	0.45	-2.3
3,911,265	+		Sama_3291	0.45	+0.2
3,911,374	+		Sama_3291	0.57	-0.6
3,911,374	+		Sama_3291	0.57	-0.8
3,911,374	+		Sama_3291	0.57	+1.8
3,911,374	+		Sama_3291	0.57	-1.4
3,911,374	+		Sama_3291	0.57	-0.8
3,911,374	+		Sama_3291	0.57	-0.6
3,911,374	+		Sama_3291	0.57	-1.7
3,911,375	-		Sama_3291	0.57	-1.0
3,911,375	-		Sama_3291	0.57	-0.8
3,911,375	-		Sama_3291	0.57	-1.7
3,911,375	-		Sama_3291	0.57	-1.4
3,911,375	-		Sama_3291	0.57	-2.4
3,911,375	-		Sama_3291	0.57	-0.8
3,911,375	-		Sama_3291	0.57	-0.6
3,911,435	-		Sama_3291	0.63	-0.8
3,911,435	-		Sama_3291	0.63	-2.0
3,911,524	+		Sama_3291	0.73	+0.2
3,911,549	+		Sama_3291	0.76	+0.8
3,911,550	-		Sama_3291	0.76	-0.6
3,911,558	+		Sama_3291	0.77	+0.2
3,911,558	+		Sama_3291	0.77	-1.6
3,911,558	+		Sama_3291	0.77	-2.2
3,911,559	-		Sama_3291	0.77	-0.6
3,911,594	+		Sama_3291	0.80	-1.9
3,911,595	-		Sama_3291	0.80	+0.1
3,911,595	-		Sama_3291	0.80	-0.8
3,911,717	+				+0.2
3,911,717	+				-0.8
3,911,718	-				-0.8
3,911,750	-				-1.9
3,911,750	-				-0.5
3,911,803	+				-1.4
3,911,803	+				+0.1
3,911,804	-				-1.0
3,911,804	-				-0.6
3,911,804	-				+0.3
3,911,807	+				+1.0
3,911,807	+				-1.6
3,911,808	-				-0.9
3,911,808	-				-0.1
3,911,808	-				+0.9