Strain Fitness in Shewanella amazonensis SB2B around Sama_3129

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,710,358	+		Sama_3128	0.60	-0.2
3,710,370	+		Sama_3128	0.60	+0.6
3,710,371	-		Sama_3128	0.60	+0.7
3,710,371	-		Sama_3128	0.60	+0.1
3,710,459	+		Sama_3128	0.64	-0.9
3,710,460	-		Sama_3128	0.64	+0.9
3,710,460	-		Sama_3128	0.64	-1.1
3,710,460	-		Sama_3128	0.64	-0.3
3,710,462	+		Sama_3128	0.64	-1.5
3,710,462	+		Sama_3128	0.64	+0.6
3,710,462	+		Sama_3128	0.64	+1.1
3,710,462	+		Sama_3128	0.64	+1.3
3,710,462	+		Sama_3128	0.64	+0.5
3,710,462	+		Sama_3128	0.64	+0.9
3,710,462	+		Sama_3128	0.64	+0.7
3,710,462	+		Sama_3128	0.64	+0.1
3,710,463	-		Sama_3128	0.64	-0.1
3,710,463	-		Sama_3128	0.64	+0.9
3,710,463	-		Sama_3128	0.64	-0.1
3,710,463	-		Sama_3128	0.64	+0.1
3,710,463	-		Sama_3128	0.64	+1.0
3,710,463	-		Sama_3128	0.64	-0.7
3,710,463	-		Sama_3128	0.64	+0.1
3,710,463	-		Sama_3128	0.64	-0.5
3,710,463	-		Sama_3128	0.64	+0.4
3,710,463	-		Sama_3128	0.64	-0.6
3,710,594	+		Sama_3128	0.70	-0.2
3,710,595	-		Sama_3128	0.70	+1.1
3,710,595	-		Sama_3128	0.70	+0.2
3,710,628	-		Sama_3128	0.71	+0.2
3,710,628	-		Sama_3128	0.71	+0.7
3,710,650	-		Sama_3128	0.72	+1.3
3,710,709	-		Sama_3128	0.74	+0.6
3,710,709	-		Sama_3128	0.74	-0.0
3,710,709	-		Sama_3128	0.74	-2.1
3,710,760	+		Sama_3128	0.77	+1.9
3,710,761	-		Sama_3128	0.77	+1.3
3,710,780	+		Sama_3128	0.77	-1.2
3,710,781	-		Sama_3128	0.77	+0.7
3,710,781	-		Sama_3128	0.77	-0.7
3,710,937	+		Sama_3128	0.84	-2.5
3,710,981	+		Sama_3128	0.86	-0.5
3,710,982	-		Sama_3128	0.86	+0.3
3,711,024	+		Sama_3128	0.88	+1.0
3,711,024	+		Sama_3128	0.88	-2.3
3,711,025	-		Sama_3128	0.88	-2.8
3,711,025	-		Sama_3128	0.88	+0.7
3,711,037	+		Sama_3128	0.88	-1.2
3,711,037	+		Sama_3128	0.88	+0.6
3,711,037	+		Sama_3128	0.88	+1.1
3,711,037	+		Sama_3128	0.88	-0.0
3,711,038	-		Sama_3128	0.88	-1.1
3,711,189	-				+0.9
3,711,321	+				-1.3
3,711,321	+				+0.9
3,711,321	+				+0.6
3,711,322	-				-0.9
3,711,322	-				+0.1
3,711,322	-				+0.3
3,711,322	-				-0.3
3,711,322	-				-1.3
3,711,322	-				+0.5
3,711,333	-				-3.3
3,711,340	+				-0.1
3,711,365	+				-0.2
3,711,365	+				+0.5
3,711,365	+				+1.7
3,711,365	+				+1.9
3,711,366	-				+0.5
3,711,366	-				-0.5
3,711,366	-				-0.1
3,711,366	-				+1.0
3,711,366	-				+0.6
3,711,372	+				-0.9
3,711,372	+				-0.1
3,711,963	+		Sama_3129	0.17	-2.4
3,712,585	+		Sama_3129	0.34	+0.7
3,712,602	-		Sama_3129	0.34	-2.1
3,713,316	+		Sama_3129	0.53	-0.2
3,713,317	-		Sama_3129	0.53	-0.7
3,713,583	-		Sama_3129	0.60	-1.1
3,713,778	-		Sama_3129	0.66	+1.7
3,714,041	-		Sama_3129	0.73	+0.1
3,714,271	+		Sama_3129	0.79	+0.1
3,714,346	+		Sama_3129	0.81	-0.9
3,714,515	-		Sama_3129	0.86	+0.1
3,714,728	-				-0.3
3,714,964	-				+0.1
3,714,974	-				+0.1
3,714,980	-				-0.7
3,714,980	-				-0.3
3,714,980	-				-1.1
3,715,107	+				-0.2
3,715,109	+				+0.7
3,715,109	+				+2.3
3,715,109	+				+0.4
3,715,109	+				+0.4
3,715,110	-				+0.2
3,715,110	-				-1.2
3,715,110	-				+0.4
3,715,110	-				+0.8
3,715,110	-				-0.5
3,715,110	-				-0.2
3,715,110	-				-0.4
3,715,110	-				+0.0
3,715,113	-				-2.2
3,715,113	-				-0.3
3,715,113	-				-1.9
3,715,143	-				-0.4
3,715,143	-				+0.0
3,715,143	-				-1.2
3,715,188	+				-1.0
3,715,189	-				+0.3
3,715,189	-				+0.5
3,715,246	+				+1.4
3,715,246	+				-0.0
3,715,246	+				+0.1
3,715,246	+				-3.4
3,715,246	+				-0.8
3,715,247	-				+0.7
3,715,247	-				-0.7
3,715,247	-				-0.2
3,715,247	-				+2.1
3,715,301	-				+2.0
3,715,345	+				-0.0
3,715,345	+				-0.8
3,715,345	+				+1.0
3,715,345	+				+1.1
3,715,345	+				-2.0
3,715,345	+				-0.7
3,715,345	+				+0.4
3,715,346	-				+0.3
3,715,346	-				+0.0
3,715,346	-				-0.4
3,715,346	-				-1.5
3,715,346	-				+0.1
3,715,346	-				-1.8
3,715,346	-				-0.7
3,715,346	-				-0.1
3,715,346	-				-1.6
3,715,346	-				-1.9
3,715,346	-				-0.2
3,715,346	-				-0.5
3,715,346	-				-1.1
3,715,346	-				+0.1
3,715,346	-				+1.3
3,715,375	+				+0.4
3,715,376	-				+3.2
3,715,376	-				-0.3
3,715,376	-				-0.2
3,715,386	+		Sama_3130	0.10	-0.7
3,715,386	+		Sama_3130	0.10	+0.2
3,715,386	+		Sama_3130	0.10	+1.7
3,715,386	+		Sama_3130	0.10	+0.1
3,715,386	+		Sama_3130	0.10	-0.3
3,715,387	-		Sama_3130	0.10	+0.7
3,715,387	-		Sama_3130	0.10	-1.5
3,715,401	-		Sama_3130	0.11	-1.8
3,715,412	+		Sama_3130	0.12	+0.6
3,715,412	+		Sama_3130	0.12	+0.1
3,715,412	+		Sama_3130	0.12	+0.2
3,715,412	+		Sama_3130	0.12	+0.0
3,715,412	+		Sama_3130	0.12	-1.7
3,715,413	-		Sama_3130	0.12	+0.4
3,715,413	-		Sama_3130	0.12	-0.6
3,715,494	+		Sama_3130	0.18	+0.5
3,715,495	-		Sama_3130	0.18	-0.1
3,715,547	+		Sama_3130	0.22	-0.7
3,715,567	+		Sama_3130	0.23	-0.5
3,715,567	+		Sama_3130	0.23	+0.4
3,715,567	+		Sama_3130	0.23	+2.1
3,715,567	+		Sama_3130	0.23	-0.1
3,715,567	+		Sama_3130	0.23	+0.6
3,715,567	+		Sama_3130	0.23	-0.2
3,715,567	+		Sama_3130	0.23	-0.6
3,715,568	-		Sama_3130	0.23	+0.2
3,715,568	-		Sama_3130	0.23	-2.0
3,715,568	-		Sama_3130	0.23	+0.3
3,715,568	-		Sama_3130	0.23	-0.4
3,715,568	-		Sama_3130	0.23	-0.9
3,715,568	-		Sama_3130	0.23	+0.8
3,715,568	-		Sama_3130	0.23	+0.1
3,715,568	-		Sama_3130	0.23	-0.6
3,715,590	+		Sama_3130	0.25	-1.5
3,715,590	+		Sama_3130	0.25	+0.2
3,715,591	-		Sama_3130	0.25	-1.3
3,715,591	-		Sama_3130	0.25	+2.3
3,715,716	+		Sama_3130	0.34	+0.7
3,715,716	+		Sama_3130	0.34	-1.2
3,715,716	+		Sama_3130	0.34	-1.4
3,715,717	-		Sama_3130	0.34	-1.1
3,715,729	+		Sama_3130	0.35	+0.0
3,715,729	+		Sama_3130	0.35	+0.2
3,715,730	-		Sama_3130	0.35	-2.1
3,715,784	+		Sama_3130	0.39	+0.6
3,715,805	+		Sama_3130	0.40	+0.7
3,715,806	-		Sama_3130	0.40	-1.3
3,715,824	-		Sama_3130	0.42	+0.8
3,715,861	+		Sama_3130	0.44	-0.5
3,715,861	+		Sama_3130	0.44	+0.7
3,715,862	-		Sama_3130	0.44	+0.3
3,715,862	-		Sama_3130	0.44	-2.0
3,715,862	-		Sama_3130	0.44	+0.0
3,715,862	-		Sama_3130	0.44	+0.6
3,715,879	-		Sama_3130	0.46	-0.9
3,715,926	+		Sama_3130	0.49	+0.1
3,715,926	+		Sama_3130	0.49	-0.3
3,715,926	+		Sama_3130	0.49	-0.0
3,715,926	+		Sama_3130	0.49	-0.8
3,715,927	-		Sama_3130	0.49	-0.8
3,715,927	-		Sama_3130	0.49	-1.2
3,715,941	-		Sama_3130	0.50	-0.1
3,715,989	-		Sama_3130	0.53	+0.4
3,715,993	+		Sama_3130	0.54	+0.7
3,715,993	+		Sama_3130	0.54	-0.7
3,715,993	+		Sama_3130	0.54	+0.4
3,715,994	-		Sama_3130	0.54	-1.4
3,715,994	-		Sama_3130	0.54	+0.3
3,715,994	-		Sama_3130	0.54	-3.1
3,716,005	+		Sama_3130	0.55	+0.3
3,716,005	+		Sama_3130	0.55	+0.0
3,716,005	+		Sama_3130	0.55	+0.1
3,716,005	+		Sama_3130	0.55	-0.0
3,716,006	-		Sama_3130	0.55	-0.6
3,716,006	-		Sama_3130	0.55	-0.1
3,716,006	-		Sama_3130	0.55	-1.1
3,716,006	-		Sama_3130	0.55	+0.5
3,716,031	-		Sama_3130	0.56	+1.1
3,716,031	-		Sama_3130	0.56	-1.1
3,716,048	+		Sama_3130	0.58	-3.1
3,716,048	+		Sama_3130	0.58	+2.4