Strain Fitness in Shewanella amazonensis SB2B around Sama_3102

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,675,154	+		Sama_3101	0.30	-2.3
3,675,155	-		Sama_3101	0.30	+0.4
3,675,155	-		Sama_3101	0.30	+0.1
3,675,214	+		Sama_3101	0.35	-0.5
3,675,214	+		Sama_3101	0.35	-0.0
3,675,214	+		Sama_3101	0.35	+1.1
3,675,215	-		Sama_3101	0.35	-0.1
3,675,215	-		Sama_3101	0.35	-1.7
3,675,225	+		Sama_3101	0.36	+0.9
3,675,225	+		Sama_3101	0.36	+0.5
3,675,225	+		Sama_3101	0.36	+0.4
3,675,226	-		Sama_3101	0.36	+0.3
3,675,226	-		Sama_3101	0.36	-0.5
3,675,226	-		Sama_3101	0.36	+0.9
3,675,228	+		Sama_3101	0.36	+1.1
3,675,228	+		Sama_3101	0.36	-1.4
3,675,228	+		Sama_3101	0.36	+1.0
3,675,228	+		Sama_3101	0.36	-0.3
3,675,229	-		Sama_3101	0.36	-2.4
3,675,327	+		Sama_3101	0.44	-0.9
3,675,328	-		Sama_3101	0.44	+1.1
3,675,384	+		Sama_3101	0.49	+0.3
3,675,385	-		Sama_3101	0.49	-0.7
3,675,393	+		Sama_3101	0.50	-0.2
3,675,393	+		Sama_3101	0.50	+0.2
3,675,393	+		Sama_3101	0.50	+0.2
3,675,394	-		Sama_3101	0.50	-0.5
3,675,394	-		Sama_3101	0.50	-0.6
3,675,394	-		Sama_3101	0.50	+0.8
3,675,394	-		Sama_3101	0.50	-0.2
3,675,456	+		Sama_3101	0.55	-2.9
3,675,457	-		Sama_3101	0.55	+0.1
3,675,506	-		Sama_3101	0.59	-1.3
3,675,623	+		Sama_3101	0.69	-1.8
3,675,624	-		Sama_3101	0.69	-0.1
3,675,708	+		Sama_3101	0.76	-0.7
3,675,708	+		Sama_3101	0.76	-1.1
3,675,709	-		Sama_3101	0.76	+0.5
3,675,709	-		Sama_3101	0.76	+1.4
3,675,709	-		Sama_3101	0.76	+0.2
3,675,709	-		Sama_3101	0.76	-0.4
3,675,709	-		Sama_3101	0.76	-0.7
3,675,726	+		Sama_3101	0.78	-0.5
3,675,727	-		Sama_3101	0.78	+1.8
3,675,748	-		Sama_3101	0.80	-0.4
3,675,755	+		Sama_3101	0.80	-0.5
3,675,755	+		Sama_3101	0.80	+0.3
3,675,755	+		Sama_3101	0.80	-0.7
3,675,755	+		Sama_3101	0.80	-0.6
3,675,756	-		Sama_3101	0.80	+0.7
3,675,756	-		Sama_3101	0.80	+0.2
3,675,756	-		Sama_3101	0.80	-0.7
3,675,845	+		Sama_3101	0.88	+1.3
3,675,846	-		Sama_3101	0.88	+1.1
3,675,846	-		Sama_3101	0.88	+0.4
3,675,846	-		Sama_3101	0.88	+0.8
3,675,853	+		Sama_3101	0.89	-0.0
3,675,854	-		Sama_3101	0.89	-0.9
3,675,854	-		Sama_3101	0.89	+0.2
3,675,870	+				+0.1
3,675,870	+				-0.2
3,675,870	+				+1.9
3,675,871	-				-0.7
3,675,871	-				+0.1
3,675,871	-				-0.6
3,675,934	+				-0.5
3,675,934	+				-0.3
3,675,935	-				-0.4
3,675,999	-				-1.1
3,676,013	-				-0.1
3,676,013	-				-0.7
3,676,066	+				-0.7
3,676,066	+				+0.1
3,676,066	+				+0.3
3,676,066	+				-0.3
3,676,066	+				-0.2
3,676,066	+				+0.9
3,676,067	-				+1.8
3,676,067	-				+0.3
3,676,067	-				-0.7
3,676,067	-				+0.1
3,676,067	-				+0.1
3,676,067	-				-1.3
3,676,067	-				+1.1
3,676,067	-				+0.2
3,676,083	-				-1.5
3,676,118	+				-0.5
3,676,133	+				-1.7
3,676,133	+				-0.2
3,676,133	+				+0.7
3,676,134	-				-0.1
3,676,242	-		Sama_3102	0.15	-0.2
3,676,327	-		Sama_3102	0.26	-0.5
3,676,398	+		Sama_3102	0.35	-2.6
3,676,398	+		Sama_3102	0.35	-1.0
3,676,398	+		Sama_3102	0.35	-0.2
3,676,398	+		Sama_3102	0.35	-1.2
3,676,399	-		Sama_3102	0.35	+0.6
3,676,399	-		Sama_3102	0.35	+0.4
3,676,399	-		Sama_3102	0.35	-0.2
3,676,399	-		Sama_3102	0.35	-0.2
3,676,399	-		Sama_3102	0.35	-0.1
3,676,399	-		Sama_3102	0.35	-0.7
3,676,399	-		Sama_3102	0.35	-0.7
3,676,399	-		Sama_3102	0.35	-1.1
3,676,399	-		Sama_3102	0.35	+0.2
3,676,444	+		Sama_3102	0.41	+0.8
3,676,445	-		Sama_3102	0.41	-1.4
3,676,445	-		Sama_3102	0.41	+0.3
3,676,445	-		Sama_3102	0.41	-0.5
3,676,514	-		Sama_3102	0.50	-0.3
3,676,514	-		Sama_3102	0.50	-0.4
3,676,529	-		Sama_3102	0.52	-0.6
3,676,537	-		Sama_3102	0.53	+0.8
3,676,594	+		Sama_3102	0.60	-0.5
3,676,595	-		Sama_3102	0.61	-1.0
3,676,609	+		Sama_3102	0.62	-0.6
3,676,610	-		Sama_3102	0.62	-0.1
3,676,615	+		Sama_3102	0.63	-1.7
3,676,720	+		Sama_3102	0.77	+0.7
3,676,720	+		Sama_3102	0.77	+0.1
3,676,720	+		Sama_3102	0.77	-0.7
3,676,720	+		Sama_3102	0.77	-0.7
3,676,720	+		Sama_3102	0.77	+0.4
3,676,720	+		Sama_3102	0.77	-1.8
3,676,720	+		Sama_3102	0.77	-1.9
3,676,721	-		Sama_3102	0.77	+0.4
3,676,721	-		Sama_3102	0.77	-1.4
3,676,721	-		Sama_3102	0.77	+0.2
3,676,741	+		Sama_3102	0.80	+0.0
3,676,741	+		Sama_3102	0.80	-0.6
3,676,741	+		Sama_3102	0.80	-0.3
3,676,742	-		Sama_3102	0.80	-0.1
3,676,742	-		Sama_3102	0.80	-0.7
3,676,742	-		Sama_3102	0.80	+1.0
3,676,777	+		Sama_3102	0.84	-0.1
3,676,778	-		Sama_3102	0.84	+0.3
3,676,854	+				-0.3
3,676,854	+				+0.4
3,676,854	+				+0.2
3,676,854	+				-1.5
3,676,854	+				-0.2
3,676,854	+				+0.9
3,676,854	+				-2.5
3,676,854	+				-0.8
3,676,854	+				+0.3
3,676,855	-				-1.1
3,676,855	-				+0.7
3,676,855	-				-1.8
3,676,855	-				+1.1
3,676,855	-				-0.6
3,676,855	-				-0.7
3,676,855	-				-1.4
3,676,855	-				+1.7
3,676,855	-				-0.3
3,676,855	-				-0.4
3,676,855	-				+0.3
3,676,867	+				+0.7
3,676,893	+				+2.2
3,676,893	+				+0.1
3,676,893	+				-0.4
3,676,893	+				+0.8
3,676,894	-				-1.9
3,676,894	-				+0.3
3,676,894	-				-0.5
3,676,894	-				-1.1
3,676,894	-				+0.1
3,676,894	-				-1.7
3,676,897	+				+0.7
3,676,897	+				+0.7
3,676,897	+				-0.2
3,676,897	+				-0.0
3,676,897	+				+0.3
3,676,897	+				+1.1
3,676,897	+				+0.3
3,676,898	-				-1.1
3,676,898	-				+0.7
3,676,898	-				+0.9
3,676,927	+				-0.3
3,676,927	+				-0.7
3,676,928	-				-1.5
3,676,957	+				-0.7
3,676,984	+				+0.5
3,676,985	-				-1.8
3,676,985	-				+0.8
3,677,019	+				-0.2
3,677,019	+				-0.1
3,677,040	+				-0.0
3,677,050	+				-0.3
3,677,050	+				+0.5
3,677,050	+				-0.9
3,677,050	+				-2.7
3,677,050	+				+0.5
3,677,050	+				-0.3
3,677,050	+				-0.5
3,677,051	-				+0.2
3,677,051	-				+1.2
3,677,109	+				+0.4
3,677,114	+				+1.8
3,677,115	-				+0.0
3,677,115	-				-0.2
3,677,147	+				-0.7
3,677,147	+				+0.9
3,677,147	+				+0.7
3,677,147	+				-1.0
3,677,147	+				-1.0
3,677,147	+				-0.1
3,677,147	+				-1.5
3,677,147	+				+1.4
3,677,147	+				+0.5
3,677,147	+				-1.6
3,677,148	-				-0.2
3,677,148	-				+1.1
3,677,148	-				-0.8
3,677,148	-				+1.7
3,677,148	-				-1.1
3,677,148	-				-1.9
3,677,148	-				-0.2
3,677,148	-				+0.9
3,677,148	-				-0.4
3,677,148	-				-1.1
3,677,148	-				-0.9
3,677,148	-				-1.6
3,677,148	-				-0.9
3,677,148	-				-1.2
3,677,150	+				-0.3
3,677,150	+				-1.1
3,677,150	+				-2.1
3,677,150	+				-0.3
3,677,150	+				-1.1
3,677,150	+				+1.1
3,677,151	-				-0.3
3,677,151	-				+1.0
3,677,151	-				+0.5
3,677,151	-				+0.0
3,677,151	-				+1.2
3,677,151	-				+0.1
3,677,151	-				+1.0
3,677,151	-				-0.3
3,677,151	-				+2.2
3,677,151	-				-0.8
3,677,151	-				+0.9
3,677,151	-				-3.0
3,677,154	+				-1.2
3,677,154	+				-1.9
3,677,208	-				-0.9
3,677,239	-				-0.1
3,677,272	+				+0.1
3,677,273	-				-1.3
3,677,308	+		Sama_3103	0.15	+0.3
3,677,308	+		Sama_3103	0.15	+0.3
3,677,308	+		Sama_3103	0.15	-0.1
3,677,308	+		Sama_3103	0.15	-1.1
3,677,308	+		Sama_3103	0.15	-0.8
3,677,308	+		Sama_3103	0.15	+0.4
3,677,350	+		Sama_3103	0.23	-0.7
3,677,350	+		Sama_3103	0.23	-0.7
3,677,350	+		Sama_3103	0.23	-0.4
3,677,351	-		Sama_3103	0.23	-1.1
3,677,351	-		Sama_3103	0.23	+0.3
3,677,351	-		Sama_3103	0.23	-1.8
3,677,364	+		Sama_3103	0.25	-0.3
3,677,364	+		Sama_3103	0.25	-0.7
3,677,364	+		Sama_3103	0.25	-0.9
3,677,364	+		Sama_3103	0.25	-0.3
3,677,364	+		Sama_3103	0.25	-0.1
3,677,364	+		Sama_3103	0.25	+0.1
3,677,364	+		Sama_3103	0.25	-1.1
3,677,364	+		Sama_3103	0.25	-1.3
3,677,365	-		Sama_3103	0.25	+1.5
3,677,365	-		Sama_3103	0.25	+0.3
3,677,365	-		Sama_3103	0.25	-0.4
3,677,419	+		Sama_3103	0.35	-2.5
3,677,491	+		Sama_3103	0.48	+0.2
3,677,491	+		Sama_3103	0.48	-0.7
3,677,492	-		Sama_3103	0.48	-0.2
3,677,511	+		Sama_3103	0.52	+2.0
3,677,511	+		Sama_3103	0.52	+1.7
3,677,511	+		Sama_3103	0.52	-1.3
3,677,511	+		Sama_3103	0.52	+0.4
3,677,511	+		Sama_3103	0.52	-1.5
3,677,511	+		Sama_3103	0.52	-1.6
3,677,511	+		Sama_3103	0.52	+0.7
3,677,512	-		Sama_3103	0.52	-0.7
3,677,512	-		Sama_3103	0.52	-0.2
3,677,512	-		Sama_3103	0.52	-1.0
3,677,512	-		Sama_3103	0.52	+0.5
3,677,512	-		Sama_3103	0.52	+1.1
3,677,512	-		Sama_3103	0.52	-0.0
3,677,517	+		Sama_3103	0.53	-0.6
3,677,518	-		Sama_3103	0.53	+1.0
3,677,526	+		Sama_3103	0.54	-0.3
3,677,526	+		Sama_3103	0.54	+0.9
3,677,527	-		Sama_3103	0.54	-0.5
3,677,543	-		Sama_3103	0.57	-1.1
3,677,547	+		Sama_3103	0.58	-1.0
3,677,548	-		Sama_3103	0.58	+0.9
3,677,569	+		Sama_3103	0.62	+2.7
3,677,569	+		Sama_3103	0.62	-2.2
3,677,569	+		Sama_3103	0.62	-0.1
3,677,570	-		Sama_3103	0.62	-0.2
3,677,570	-		Sama_3103	0.62	-1.3
3,677,575	+		Sama_3103	0.63	-0.6
3,677,575	+		Sama_3103	0.63	-1.7
3,677,575	+		Sama_3103	0.63	+0.2
3,677,619	+		Sama_3103	0.71	-0.9
3,677,619	+		Sama_3103	0.71	+0.9
3,677,619	+		Sama_3103	0.71	+1.1
3,677,619	+		Sama_3103	0.71	-0.5
3,677,619	+		Sama_3103	0.71	+0.7
3,677,619	+		Sama_3103	0.71	+1.8
3,677,619	+		Sama_3103	0.71	+0.5
3,677,640	+		Sama_3103	0.75	-0.9
3,677,640	+		Sama_3103	0.75	+0.0
3,677,641	-		Sama_3103	0.75	-0.3
3,677,656	+		Sama_3103	0.77	+1.1
3,677,656	+		Sama_3103	0.77	-0.8
3,677,656	+		Sama_3103	0.77	-1.7
3,677,663	+		Sama_3103	0.79	+0.1
3,677,663	+		Sama_3103	0.79	+0.6
3,677,663	+		Sama_3103	0.79	+2.1
3,677,663	+		Sama_3103	0.79	-0.2
3,677,663	+		Sama_3103	0.79	-0.9
3,677,664	-		Sama_3103	0.79	-0.7
3,677,664	-		Sama_3103	0.79	-0.8
3,677,664	-		Sama_3103	0.79	+2.0
3,677,664	-		Sama_3103	0.79	+0.3
3,677,664	-		Sama_3103	0.79	-1.0
3,677,664	-		Sama_3103	0.79	-1.0
3,677,664	-		Sama_3103	0.79	+1.0
3,677,664	-		Sama_3103	0.79	-0.1
3,677,702	+		Sama_3103	0.86	+0.4
3,677,703	-		Sama_3103	0.86	-0.2