Strain Fitness in Shewanella amazonensis SB2B around Sama_3085

Experiment: Paraquat dichloride 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_3083 and Sama_3084 overlap by 1 nucleotidesSama_3084 and Sama_3085 overlap by 4 nucleotidesSama_3085 and Sama_3086 overlap by 14 nucleotidesSama_3086 and Sama_3087 overlap by 4 nucleotides Sama_3083: Sama_3083 - arabinose-5-phosphate isomerase (RefSeq), at 3,660,047 to 3,661,024 _3083 Sama_3084: Sama_3084 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq), at 3,661,024 to 3,661,572 _3084 Sama_3085: Sama_3085 - hypothetical protein (RefSeq), at 3,661,569 to 3,662,126 _3085 Sama_3086: Sama_3086 - OstA-like protein (RefSeq), at 3,662,113 to 3,662,667 _3086 Sama_3087: Sama_3087 - ABC transporter, ATP-binding protein (RefSeq), at 3,662,664 to 3,663,395 _3087 Position (kb) 3661 3662 3663Strain fitness (log2 ratio) -1 0 1at 3660.700 kb on + strand, within Sama_3083at 3660.700 kb on + strand, within Sama_3083at 3661.006 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml
remove
3,660,700 + Sama_3083 0.67 +0.7
3,660,700 + Sama_3083 0.67 +0.5
3,661,006 + -1.7

Or see this region's nucleotide sequence