Strain Fitness in Shewanella amazonensis SB2B around Sama_3075

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,653,293	+		Sama_3074	0.43	-1.2
3,653,294	-		Sama_3074	0.43	+1.1
3,653,325	+		Sama_3074	0.46	-0.7
3,653,327	+		Sama_3074	0.46	+0.1
3,653,327	+		Sama_3074	0.46	-2.4
3,653,357	+		Sama_3074	0.49	-1.9
3,653,455	+		Sama_3074	0.58	-1.4
3,653,455	+		Sama_3074	0.58	+0.6
3,653,455	+		Sama_3074	0.58	-1.5
3,653,456	-		Sama_3074	0.58	-1.4
3,653,459	+		Sama_3074	0.58	-1.5
3,653,459	+		Sama_3074	0.58	-0.7
3,653,459	+		Sama_3074	0.58	-1.5
3,653,459	+		Sama_3074	0.58	-1.8
3,653,460	-		Sama_3074	0.58	+0.1
3,653,460	-		Sama_3074	0.58	-0.1
3,653,476	+		Sama_3074	0.60	-0.2
3,653,503	+		Sama_3074	0.62	-3.3
3,653,503	+		Sama_3074	0.62	-0.4
3,653,559	+		Sama_3074	0.68	-0.7
3,653,859	+				-1.5
3,653,859	+				-0.4
3,653,859	+				+1.8
3,653,859	+				-0.9
3,653,866	+				-2.0
3,653,898	+				+0.6
3,653,898	+				-0.7
3,653,899	-				-1.3
3,653,900	+				+1.2
3,653,900	+				-2.0
3,653,900	+				-1.9
3,653,900	+				-0.8
3,653,900	+				+0.4
3,653,900	+				-1.3
3,653,900	+				-1.1
3,653,900	+				-2.5
3,653,901	-				+0.9
3,653,901	-				+0.1
3,653,901	-				+3.0
3,653,901	-				+2.3
3,653,904	+				+1.1
3,653,905	-				+2.2
3,653,916	-				-1.4
3,653,962	+				+2.0
3,653,962	+				-1.7
3,653,963	-				-2.3
3,653,969	+				-0.9
3,653,969	+				-1.5
3,653,969	+				-0.9
3,653,969	+				-2.0
3,653,970	-				-0.6
3,653,970	-				+0.2
3,653,970	-				-1.2
3,654,045	-				+0.5
3,654,123	+				-1.1
3,654,124	-				+1.5
3,654,124	-				-0.5
3,654,124	-				-0.1
3,654,124	-				+0.2
3,654,146	+				+0.5
3,654,146	+				+0.4
3,654,146	+				+0.1
3,654,147	-				-0.6
3,654,210	+				+0.5
3,654,210	+				-0.8
3,654,223	+				-0.1
3,654,223	+				-0.7
3,654,223	+				-1.3
3,654,224	-				+1.4
3,654,226	-				-0.2
3,654,262	+				-0.7
3,654,263	-				-2.5
3,654,263	-				-1.4
3,654,263	-				+1.2
3,654,263	-				+0.6
3,654,275	+				+0.3
3,654,276	-				-0.4
3,654,276	-				-0.6
3,655,819	-				+0.2
3,655,819	-				-0.9
3,655,854	-				+0.5
3,655,854	-				+0.2
3,655,861	-		Sama_3077	0.12	-1.5
3,655,861	-		Sama_3077	0.12	-1.2
3,655,861	-		Sama_3077	0.12	-1.6
3,655,877	-		Sama_3077	0.18	-1.7
3,655,907	-		Sama_3077	0.28	-1.8
3,655,910	-		Sama_3077	0.29	-3.8
3,655,910	-		Sama_3077	0.29	-0.8
3,655,910	-		Sama_3077	0.29	-3.6
3,655,910	-		Sama_3077	0.29	-3.1
3,655,925	-		Sama_3077	0.34	-0.4
3,655,941	-		Sama_3077	0.40	-0.2
3,655,977	+		Sama_3077	0.52	-3.5
3,655,978	-		Sama_3077	0.52	-1.7
3,656,022	-		Sama_3077	0.67	-2.1
3,656,022	-		Sama_3077	0.67	-2.7
3,656,031	-		Sama_3077	0.70	-0.4
3,656,176	+				+0.6
3,656,176	+				+1.6
3,656,177	-		Sama_3078	0.10	-1.7
3,656,177	-		Sama_3078	0.10	-1.2
3,656,189	-		Sama_3078	0.12	-1.2
3,656,397	-		Sama_3078	0.44	-1.7
3,656,397	-		Sama_3078	0.44	-2.3
3,656,397	-		Sama_3078	0.44	-0.9
3,656,397	-		Sama_3078	0.44	-2.1
3,656,397	-		Sama_3078	0.44	-2.8
3,656,417	+		Sama_3078	0.48	+0.6
3,656,418	-		Sama_3078	0.48	-2.9
3,656,438	+		Sama_3078	0.51	-0.7
3,656,438	+		Sama_3078	0.51	-2.2
3,656,438	+		Sama_3078	0.51	+1.6
3,656,438	+		Sama_3078	0.51	-2.1
3,656,439	-		Sama_3078	0.51	-1.9
3,656,439	-		Sama_3078	0.51	-1.9
3,656,439	-		Sama_3078	0.51	-1.2
3,656,439	-		Sama_3078	0.51	-2.1
3,656,439	-		Sama_3078	0.51	-0.9
3,656,442	+		Sama_3078	0.51	-1.7
3,656,442	+		Sama_3078	0.51	-0.4
3,656,442	+		Sama_3078	0.51	-1.4
3,656,443	-		Sama_3078	0.52	-2.1
3,656,443	-		Sama_3078	0.52	-1.8
3,656,443	-		Sama_3078	0.52	-0.7
3,656,443	-		Sama_3078	0.52	+0.1
3,656,443	-		Sama_3078	0.52	-2.1
3,656,443	-		Sama_3078	0.52	-2.1
3,656,453	+		Sama_3078	0.53	-0.7
3,656,453	+		Sama_3078	0.53	-0.7
3,656,454	-		Sama_3078	0.53	-0.4
3,656,454	-		Sama_3078	0.53	-2.3
3,656,511	-		Sama_3078	0.62	-0.4
3,656,511	-		Sama_3078	0.62	-3.0
3,656,522	-		Sama_3078	0.64	-1.8
3,656,528	+		Sama_3078	0.65	-1.2
3,656,528	+		Sama_3078	0.65	-2.4
3,656,528	+		Sama_3078	0.65	-1.9
3,656,528	+		Sama_3078	0.65	-1.4
3,656,528	+		Sama_3078	0.65	-1.2
3,656,529	-		Sama_3078	0.65	-2.7
3,656,529	-		Sama_3078	0.65	-1.7
3,656,529	-		Sama_3078	0.65	-3.0
3,656,529	-		Sama_3078	0.65	-2.4
3,656,529	-		Sama_3078	0.65	-0.9