Strain Fitness in Shewanella amazonensis SB2B around Sama_3074

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,651,899	+		Sama_3073	0.38	-0.9
3,652,112	+		Sama_3073	0.53	-2.1
3,652,221	+		Sama_3073	0.61	+0.1
3,652,221	+		Sama_3073	0.61	-1.2
3,652,221	+		Sama_3073	0.61	-1.5
3,652,562	+		Sama_3073	0.87	-1.7
3,652,609	-				+0.6
3,652,738	+				-2.5
3,652,738	+				-1.9
3,652,757	+				-1.8
3,652,757	+				-2.6
3,652,780	+				+1.1
3,652,780	+				+0.6
3,652,799	-				-0.4
3,652,803	+				+1.8
3,652,803	+				+0.8
3,652,804	-				-1.5
3,652,849	+				-2.2
3,652,858	+				-1.2
3,652,917	+				+0.8
3,652,917	+				-1.7
3,652,917	+				-1.9
3,652,918	-				-1.7
3,653,023	+		Sama_3074	0.17	-0.8
3,653,023	+		Sama_3074	0.17	-0.4
3,653,023	+		Sama_3074	0.17	-2.1
3,653,023	+		Sama_3074	0.17	-1.8
3,653,023	+		Sama_3074	0.17	-1.7
3,653,023	+		Sama_3074	0.17	-0.9
3,653,024	-		Sama_3074	0.18	-1.2
3,653,024	-		Sama_3074	0.18	-1.5
3,653,025	+		Sama_3074	0.18	-1.4
3,653,025	+		Sama_3074	0.18	-1.9
3,653,025	+		Sama_3074	0.18	-1.5
3,653,026	-		Sama_3074	0.18	-0.7
3,653,026	-		Sama_3074	0.18	-0.9
3,653,026	-		Sama_3074	0.18	-1.2
3,653,026	-		Sama_3074	0.18	-1.5
3,653,038	+		Sama_3074	0.19	-1.5
3,653,038	+		Sama_3074	0.19	-1.9
3,653,038	+		Sama_3074	0.19	-2.2
3,653,038	+		Sama_3074	0.19	-1.9
3,653,038	+		Sama_3074	0.19	+0.6
3,653,038	+		Sama_3074	0.19	-0.7
3,653,039	-		Sama_3074	0.19	-1.7
3,653,116	+		Sama_3074	0.26	+0.6
3,653,116	+		Sama_3074	0.26	-0.2
3,653,116	+		Sama_3074	0.26	+1.1
3,653,117	-		Sama_3074	0.26	-0.5
3,653,117	-		Sama_3074	0.26	-1.8
3,653,117	-		Sama_3074	0.26	+0.3
3,653,117	-		Sama_3074	0.26	-1.5
3,653,117	-		Sama_3074	0.26	-3.1
3,653,127	+		Sama_3074	0.27	-1.1
3,653,128	-		Sama_3074	0.27	-0.9
3,653,128	-		Sama_3074	0.27	+0.1
3,653,230	+		Sama_3074	0.37	+0.8
3,653,249	+		Sama_3074	0.39	-2.0
3,653,249	+		Sama_3074	0.39	-0.7
3,653,250	-		Sama_3074	0.39	+0.1
3,653,270	+		Sama_3074	0.41	-3.1
3,653,271	-		Sama_3074	0.41	-2.6
3,653,293	+		Sama_3074	0.43	-1.2
3,653,294	-		Sama_3074	0.43	+1.1
3,653,325	+		Sama_3074	0.46	-0.7
3,653,327	+		Sama_3074	0.46	+0.1
3,653,327	+		Sama_3074	0.46	-2.4
3,653,357	+		Sama_3074	0.49	-1.9
3,653,455	+		Sama_3074	0.58	-1.4
3,653,455	+		Sama_3074	0.58	+0.6
3,653,455	+		Sama_3074	0.58	-1.5
3,653,456	-		Sama_3074	0.58	-1.4
3,653,459	+		Sama_3074	0.58	-1.5
3,653,459	+		Sama_3074	0.58	-0.7
3,653,459	+		Sama_3074	0.58	-1.5
3,653,459	+		Sama_3074	0.58	-1.8
3,653,460	-		Sama_3074	0.58	+0.1
3,653,460	-		Sama_3074	0.58	-0.1
3,653,476	+		Sama_3074	0.60	-0.2
3,653,503	+		Sama_3074	0.62	-3.3
3,653,503	+		Sama_3074	0.62	-0.4
3,653,559	+		Sama_3074	0.68	-0.7
3,653,859	+				-1.5
3,653,859	+				-0.4
3,653,859	+				+1.8
3,653,859	+				-0.9
3,653,866	+				-2.0
3,653,898	+				+0.6
3,653,898	+				-0.7
3,653,899	-				-1.3
3,653,900	+				+1.2
3,653,900	+				-2.0
3,653,900	+				-1.9
3,653,900	+				-0.8
3,653,900	+				+0.4
3,653,900	+				-1.3
3,653,900	+				-1.1
3,653,900	+				-2.5
3,653,901	-				+0.9
3,653,901	-				+0.1
3,653,901	-				+3.0
3,653,901	-				+2.3
3,653,904	+				+1.1
3,653,905	-				+2.2
3,653,916	-				-1.4
3,653,962	+				+2.0
3,653,962	+				-1.7
3,653,963	-				-2.3
3,653,969	+				-0.9
3,653,969	+				-1.5
3,653,969	+				-0.9
3,653,969	+				-2.0
3,653,970	-				-0.6
3,653,970	-				+0.2
3,653,970	-				-1.2
3,654,045	-				+0.5
3,654,123	+				-1.1
3,654,124	-				+1.5
3,654,124	-				-0.5
3,654,124	-				-0.1
3,654,124	-				+0.2
3,654,146	+				+0.5
3,654,146	+				+0.4
3,654,146	+				+0.1
3,654,147	-				-0.6
3,654,210	+				+0.5
3,654,210	+				-0.8
3,654,223	+				-0.1
3,654,223	+				-0.7
3,654,223	+				-1.3
3,654,224	-				+1.4
3,654,226	-				-0.2
3,654,262	+				-0.7
3,654,263	-				-2.5
3,654,263	-				-1.4
3,654,263	-				+1.2
3,654,263	-				+0.6
3,654,275	+				+0.3
3,654,276	-				-0.4
3,654,276	-				-0.6