Strain Fitness in Shewanella amazonensis SB2B around Sama_3063

Experiment: Paraquat dichloride 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_3060 and rplI are separated by 244 nucleotidesrplI and rpsR are separated by 40 nucleotidesrpsR and Sama_3063 are separated by 11 nucleotidesSama_3063 and rpsF are separated by 24 nucleotidesrpsF and Sama_3065 are separated by 223 nucleotides Sama_3060: Sama_3060 - TonB-dependent receptor, plug (RefSeq), at 3,637,669 to 3,640,587 _3060 Sama_3061: rplI - 50S ribosomal protein L9 (RefSeq), at 3,640,832 to 3,641,281 rplI Sama_3062: rpsR - 30S ribosomal protein S18 (RefSeq), at 3,641,322 to 3,641,549 rpsR Sama_3063: Sama_3063 - primosomal replication protein N (RefSeq), at 3,641,561 to 3,641,851 _3063 Sama_3064: rpsF - 30S ribosomal protein S6 (RefSeq), at 3,641,876 to 3,642,283 rpsF Sama_3065: Sama_3065 - putative salt-induced outer membrane protein (RefSeq), at 3,642,507 to 3,643,253 _3065 Position (kb) 3641 3642Strain fitness (log2 ratio) -2 -1 0 1at 3640.576 kb on - strandat 3640.588 kb on + strandat 3640.588 kb on + strandat 3640.588 kb on + strandat 3640.589 kb on - strandat 3640.589 kb on - strandat 3640.589 kb on - strandat 3640.595 kb on + strandat 3640.635 kb on - strandat 3640.647 kb on + strandat 3640.648 kb on - strandat 3640.648 kb on - strandat 3640.648 kb on - strandat 3640.683 kb on - strandat 3640.683 kb on - strandat 3640.719 kb on + strandat 3640.719 kb on + strandat 3640.719 kb on + strandat 3640.724 kb on + strandat 3640.724 kb on + strandat 3640.725 kb on - strandat 3640.785 kb on - strandat 3642.411 kb on + strandat 3642.412 kb on - strandat 3642.438 kb on + strandat 3642.439 kb on - strandat 3642.439 kb on - strandat 3642.439 kb on - strandat 3642.479 kb on + strandat 3642.480 kb on - strandat 3642.494 kb on + strandat 3642.505 kb on + strandat 3642.505 kb on + strandat 3642.511 kb on + strandat 3642.511 kb on + strandat 3642.512 kb on - strandat 3642.512 kb on - strandat 3642.547 kb on + strandat 3642.547 kb on + strandat 3642.547 kb on + strandat 3642.571 kb on + strandat 3642.582 kb on + strand, within Sama_3065at 3642.583 kb on - strand, within Sama_3065at 3642.645 kb on - strand, within Sama_3065at 3642.685 kb on + strand, within Sama_3065at 3642.686 kb on - strand, within Sama_3065at 3642.686 kb on - strand, within Sama_3065at 3642.686 kb on - strand, within Sama_3065at 3642.687 kb on + strand, within Sama_3065at 3642.687 kb on + strand, within Sama_3065at 3642.687 kb on + strand, within Sama_3065at 3642.687 kb on + strand, within Sama_3065at 3642.687 kb on + strand, within Sama_3065at 3642.687 kb on + strand, within Sama_3065at 3642.687 kb on + strand, within Sama_3065at 3642.687 kb on + strand, within Sama_3065at 3642.687 kb on + strand, within Sama_3065at 3642.687 kb on + strand, within Sama_3065at 3642.688 kb on - strand, within Sama_3065at 3642.688 kb on - strand, within Sama_3065at 3642.688 kb on - strand, within Sama_3065at 3642.688 kb on - strand, within Sama_3065at 3642.688 kb on - strand, within Sama_3065at 3642.688 kb on - strand, within Sama_3065at 3642.688 kb on - strand, within Sama_3065at 3642.688 kb on - strand, within Sama_3065at 3642.688 kb on - strand, within Sama_3065at 3642.688 kb on - strand, within Sama_3065at 3642.729 kb on + strand, within Sama_3065at 3642.729 kb on + strand, within Sama_3065at 3642.729 kb on + strand, within Sama_3065at 3642.730 kb on - strand, within Sama_3065at 3642.768 kb on + strand, within Sama_3065at 3642.768 kb on + strand, within Sama_3065at 3642.768 kb on + strand, within Sama_3065at 3642.769 kb on - strand, within Sama_3065at 3642.769 kb on - strand, within Sama_3065at 3642.792 kb on + strand, within Sama_3065at 3642.792 kb on + strand, within Sama_3065at 3642.792 kb on + strand, within Sama_3065at 3642.792 kb on + strand, within Sama_3065at 3642.792 kb on + strand, within Sama_3065at 3642.793 kb on - strand, within Sama_3065at 3642.810 kb on + strand, within Sama_3065at 3642.810 kb on + strand, within Sama_3065at 3642.833 kb on + strand, within Sama_3065at 3642.833 kb on + strand, within Sama_3065at 3642.833 kb on + strand, within Sama_3065at 3642.833 kb on + strand, within Sama_3065at 3642.834 kb on - strand, within Sama_3065

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml
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3,640,576 - +1.1
3,640,588 + +0.7
3,640,588 + -1.6
3,640,588 + -0.8
3,640,589 - -0.1
3,640,589 - +0.4
3,640,589 - +1.4
3,640,595 + +0.3
3,640,635 - -0.1
3,640,647 + +0.2
3,640,648 - +0.3
3,640,648 - -0.7
3,640,648 - +0.1
3,640,683 - -1.9
3,640,683 - -0.6
3,640,719 + +1.7
3,640,719 + -0.7
3,640,719 + -0.3
3,640,724 + -0.2
3,640,724 + -0.3
3,640,725 - -1.2
3,640,785 - +0.1
3,642,411 + -0.1
3,642,412 - +0.4
3,642,438 + -0.9
3,642,439 - -1.2
3,642,439 - +0.8
3,642,439 - +0.7
3,642,479 + -0.2
3,642,480 - +1.7
3,642,494 + +0.2
3,642,505 + +1.7
3,642,505 + +1.2
3,642,511 + +0.3
3,642,511 + -0.9
3,642,512 - -0.6
3,642,512 - +0.1
3,642,547 + -1.2
3,642,547 + +0.2
3,642,547 + -1.5
3,642,571 + -0.6
3,642,582 + Sama_3065 0.10 +0.7
3,642,583 - Sama_3065 0.10 +0.7
3,642,645 - Sama_3065 0.18 -1.8
3,642,685 + Sama_3065 0.24 -0.6
3,642,686 - Sama_3065 0.24 +0.9
3,642,686 - Sama_3065 0.24 +0.8
3,642,686 - Sama_3065 0.24 +0.1
3,642,687 + Sama_3065 0.24 -0.5
3,642,687 + Sama_3065 0.24 -1.3
3,642,687 + Sama_3065 0.24 -0.2
3,642,687 + Sama_3065 0.24 +1.1
3,642,687 + Sama_3065 0.24 +0.4
3,642,687 + Sama_3065 0.24 -0.5
3,642,687 + Sama_3065 0.24 -0.3
3,642,687 + Sama_3065 0.24 +0.1
3,642,687 + Sama_3065 0.24 +0.5
3,642,687 + Sama_3065 0.24 -0.7
3,642,688 - Sama_3065 0.24 +0.2
3,642,688 - Sama_3065 0.24 +0.1
3,642,688 - Sama_3065 0.24 +0.6
3,642,688 - Sama_3065 0.24 -1.6
3,642,688 - Sama_3065 0.24 -1.5
3,642,688 - Sama_3065 0.24 -0.3
3,642,688 - Sama_3065 0.24 -1.5
3,642,688 - Sama_3065 0.24 -0.8
3,642,688 - Sama_3065 0.24 +0.0
3,642,688 - Sama_3065 0.24 +0.4
3,642,729 + Sama_3065 0.30 -0.2
3,642,729 + Sama_3065 0.30 -0.9
3,642,729 + Sama_3065 0.30 +1.1
3,642,730 - Sama_3065 0.30 -1.9
3,642,768 + Sama_3065 0.35 -0.8
3,642,768 + Sama_3065 0.35 +0.5
3,642,768 + Sama_3065 0.35 +0.4
3,642,769 - Sama_3065 0.35 +0.2
3,642,769 - Sama_3065 0.35 -0.2
3,642,792 + Sama_3065 0.38 -0.9
3,642,792 + Sama_3065 0.38 +0.3
3,642,792 + Sama_3065 0.38 +1.7
3,642,792 + Sama_3065 0.38 -0.2
3,642,792 + Sama_3065 0.38 -0.0
3,642,793 - Sama_3065 0.38 -0.7
3,642,810 + Sama_3065 0.41 -0.1
3,642,810 + Sama_3065 0.41 -0.6
3,642,833 + Sama_3065 0.44 +0.6
3,642,833 + Sama_3065 0.44 -1.0
3,642,833 + Sama_3065 0.44 -1.9
3,642,833 + Sama_3065 0.44 -0.2
3,642,834 - Sama_3065 0.44 -1.0

Or see this region's nucleotide sequence