Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_3060 and rplI are separated by 244 nucleotides rplI and rpsR are separated by 40 nucleotides rpsR and Sama_3063 are separated by 11 nucleotides Sama_3063 and rpsF are separated by 24 nucleotides rpsF and Sama_3065 are separated by 223 nucleotides
Sama_3060: Sama_3060 - TonB-dependent receptor, plug (RefSeq), at 3,637,669 to 3,640,587
_3060
Sama_3061: rplI - 50S ribosomal protein L9 (RefSeq), at 3,640,832 to 3,641,281
rplI
Sama_3062: rpsR - 30S ribosomal protein S18 (RefSeq), at 3,641,322 to 3,641,549
rpsR
Sama_3063: Sama_3063 - primosomal replication protein N (RefSeq), at 3,641,561 to 3,641,851
_3063
Sama_3064: rpsF - 30S ribosomal protein S6 (RefSeq), at 3,641,876 to 3,642,283
rpsF
Sama_3065: Sama_3065 - putative salt-induced outer membrane protein (RefSeq), at 3,642,507 to 3,643,253
_3065
Position (kb)
3641
3642 Strain fitness (log2 ratio)
-2
-1
0
1 at 3640.576 kb on - strand at 3640.588 kb on + strand at 3640.588 kb on + strand at 3640.588 kb on + strand at 3640.589 kb on - strand at 3640.589 kb on - strand at 3640.589 kb on - strand at 3640.595 kb on + strand at 3640.635 kb on - strand at 3640.647 kb on + strand at 3640.648 kb on - strand at 3640.648 kb on - strand at 3640.648 kb on - strand at 3640.683 kb on - strand at 3640.683 kb on - strand at 3640.719 kb on + strand at 3640.719 kb on + strand at 3640.719 kb on + strand at 3640.724 kb on + strand at 3640.724 kb on + strand at 3640.725 kb on - strand at 3640.785 kb on - strand at 3642.411 kb on + strand at 3642.412 kb on - strand at 3642.438 kb on + strand at 3642.439 kb on - strand at 3642.439 kb on - strand at 3642.439 kb on - strand at 3642.479 kb on + strand at 3642.480 kb on - strand at 3642.494 kb on + strand at 3642.505 kb on + strand at 3642.505 kb on + strand at 3642.511 kb on + strand at 3642.511 kb on + strand at 3642.512 kb on - strand at 3642.512 kb on - strand at 3642.547 kb on + strand at 3642.547 kb on + strand at 3642.547 kb on + strand at 3642.571 kb on + strand at 3642.582 kb on + strand, within Sama_3065 at 3642.583 kb on - strand, within Sama_3065 at 3642.645 kb on - strand, within Sama_3065 at 3642.685 kb on + strand, within Sama_3065 at 3642.686 kb on - strand, within Sama_3065 at 3642.686 kb on - strand, within Sama_3065 at 3642.686 kb on - strand, within Sama_3065 at 3642.687 kb on + strand, within Sama_3065 at 3642.687 kb on + strand, within Sama_3065 at 3642.687 kb on + strand, within Sama_3065 at 3642.687 kb on + strand, within Sama_3065 at 3642.687 kb on + strand, within Sama_3065 at 3642.687 kb on + strand, within Sama_3065 at 3642.687 kb on + strand, within Sama_3065 at 3642.687 kb on + strand, within Sama_3065 at 3642.687 kb on + strand, within Sama_3065 at 3642.687 kb on + strand, within Sama_3065 at 3642.688 kb on - strand, within Sama_3065 at 3642.688 kb on - strand, within Sama_3065 at 3642.688 kb on - strand, within Sama_3065 at 3642.688 kb on - strand, within Sama_3065 at 3642.688 kb on - strand, within Sama_3065 at 3642.688 kb on - strand, within Sama_3065 at 3642.688 kb on - strand, within Sama_3065 at 3642.688 kb on - strand, within Sama_3065 at 3642.688 kb on - strand, within Sama_3065 at 3642.688 kb on - strand, within Sama_3065 at 3642.729 kb on + strand, within Sama_3065 at 3642.729 kb on + strand, within Sama_3065 at 3642.729 kb on + strand, within Sama_3065 at 3642.730 kb on - strand, within Sama_3065 at 3642.768 kb on + strand, within Sama_3065 at 3642.768 kb on + strand, within Sama_3065 at 3642.768 kb on + strand, within Sama_3065 at 3642.769 kb on - strand, within Sama_3065 at 3642.769 kb on - strand, within Sama_3065 at 3642.792 kb on + strand, within Sama_3065 at 3642.792 kb on + strand, within Sama_3065 at 3642.792 kb on + strand, within Sama_3065 at 3642.792 kb on + strand, within Sama_3065 at 3642.792 kb on + strand, within Sama_3065 at 3642.793 kb on - strand, within Sama_3065 at 3642.810 kb on + strand, within Sama_3065 at 3642.810 kb on + strand, within Sama_3065 at 3642.833 kb on + strand, within Sama_3065 at 3642.833 kb on + strand, within Sama_3065 at 3642.833 kb on + strand, within Sama_3065 at 3642.833 kb on + strand, within Sama_3065 at 3642.834 kb on - strand, within Sama_3065
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 3,640,576 - +1.1 3,640,588 + +0.7 3,640,588 + -1.6 3,640,588 + -0.8 3,640,589 - -0.1 3,640,589 - +0.4 3,640,589 - +1.4 3,640,595 + +0.3 3,640,635 - -0.1 3,640,647 + +0.2 3,640,648 - +0.3 3,640,648 - -0.7 3,640,648 - +0.1 3,640,683 - -1.9 3,640,683 - -0.6 3,640,719 + +1.7 3,640,719 + -0.7 3,640,719 + -0.3 3,640,724 + -0.2 3,640,724 + -0.3 3,640,725 - -1.2 3,640,785 - +0.1 3,642,411 + -0.1 3,642,412 - +0.4 3,642,438 + -0.9 3,642,439 - -1.2 3,642,439 - +0.8 3,642,439 - +0.7 3,642,479 + -0.2 3,642,480 - +1.7 3,642,494 + +0.2 3,642,505 + +1.7 3,642,505 + +1.2 3,642,511 + +0.3 3,642,511 + -0.9 3,642,512 - -0.6 3,642,512 - +0.1 3,642,547 + -1.2 3,642,547 + +0.2 3,642,547 + -1.5 3,642,571 + -0.6 3,642,582 + Sama_3065 0.10 +0.7 3,642,583 - Sama_3065 0.10 +0.7 3,642,645 - Sama_3065 0.18 -1.8 3,642,685 + Sama_3065 0.24 -0.6 3,642,686 - Sama_3065 0.24 +0.9 3,642,686 - Sama_3065 0.24 +0.8 3,642,686 - Sama_3065 0.24 +0.1 3,642,687 + Sama_3065 0.24 -0.5 3,642,687 + Sama_3065 0.24 -1.3 3,642,687 + Sama_3065 0.24 -0.2 3,642,687 + Sama_3065 0.24 +1.1 3,642,687 + Sama_3065 0.24 +0.4 3,642,687 + Sama_3065 0.24 -0.5 3,642,687 + Sama_3065 0.24 -0.3 3,642,687 + Sama_3065 0.24 +0.1 3,642,687 + Sama_3065 0.24 +0.5 3,642,687 + Sama_3065 0.24 -0.7 3,642,688 - Sama_3065 0.24 +0.2 3,642,688 - Sama_3065 0.24 +0.1 3,642,688 - Sama_3065 0.24 +0.6 3,642,688 - Sama_3065 0.24 -1.6 3,642,688 - Sama_3065 0.24 -1.5 3,642,688 - Sama_3065 0.24 -0.3 3,642,688 - Sama_3065 0.24 -1.5 3,642,688 - Sama_3065 0.24 -0.8 3,642,688 - Sama_3065 0.24 +0.0 3,642,688 - Sama_3065 0.24 +0.4 3,642,729 + Sama_3065 0.30 -0.2 3,642,729 + Sama_3065 0.30 -0.9 3,642,729 + Sama_3065 0.30 +1.1 3,642,730 - Sama_3065 0.30 -1.9 3,642,768 + Sama_3065 0.35 -0.8 3,642,768 + Sama_3065 0.35 +0.5 3,642,768 + Sama_3065 0.35 +0.4 3,642,769 - Sama_3065 0.35 +0.2 3,642,769 - Sama_3065 0.35 -0.2 3,642,792 + Sama_3065 0.38 -0.9 3,642,792 + Sama_3065 0.38 +0.3 3,642,792 + Sama_3065 0.38 +1.7 3,642,792 + Sama_3065 0.38 -0.2 3,642,792 + Sama_3065 0.38 -0.0 3,642,793 - Sama_3065 0.38 -0.7 3,642,810 + Sama_3065 0.41 -0.1 3,642,810 + Sama_3065 0.41 -0.6 3,642,833 + Sama_3065 0.44 +0.6 3,642,833 + Sama_3065 0.44 -1.0 3,642,833 + Sama_3065 0.44 -1.9 3,642,833 + Sama_3065 0.44 -0.2 3,642,834 - Sama_3065 0.44 -1.0
Or see this region's nucleotide sequence