Strain Fitness in Shewanella amazonensis SB2B around Sama_3048

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,624,776	-		Sama_3046	0.81	-0.4
3,624,797	+		Sama_3046	0.86	-1.4
3,624,797	+		Sama_3046	0.86	+0.2
3,624,798	-		Sama_3046	0.86	-1.2
3,624,798	-		Sama_3046	0.86	+0.9
3,624,890	+				-0.2
3,624,890	+				-0.3
3,624,890	+				+0.3
3,624,890	+				-0.9
3,624,890	+				-2.0
3,624,890	+				+1.0
3,624,890	+				+1.0
3,624,891	-				-0.4
3,624,891	-				+1.3
3,624,891	-				-0.2
3,624,891	-				+1.0
3,624,891	-				-0.7
3,624,891	-				+1.9
3,624,891	-				+1.0
3,624,891	-				-0.4
3,624,891	-				+0.6
3,624,891	-				+1.4
3,624,891	-				+0.6
3,624,900	+				-0.2
3,624,938	+		Sama_3047	0.12	-1.5
3,624,939	-		Sama_3047	0.12	+0.6
3,624,967	+		Sama_3047	0.16	-1.1
3,624,968	-		Sama_3047	0.16	+1.3
3,624,968	-		Sama_3047	0.16	+0.4
3,625,001	+		Sama_3047	0.22	+0.2
3,625,001	+		Sama_3047	0.22	-0.8
3,625,001	+		Sama_3047	0.22	+0.2
3,625,002	-		Sama_3047	0.22	-2.6
3,625,072	+		Sama_3047	0.33	-2.0
3,625,109	-		Sama_3047	0.39	+0.0
3,625,109	-		Sama_3047	0.39	-2.0
3,625,109	-		Sama_3047	0.39	-0.7
3,625,109	-		Sama_3047	0.39	-0.2
3,625,109	-		Sama_3047	0.39	-0.0
3,625,109	-		Sama_3047	0.39	+0.9
3,625,109	-		Sama_3047	0.39	-0.3
3,625,139	+		Sama_3047	0.44	+1.6
3,625,139	+		Sama_3047	0.44	-1.7
3,625,139	+		Sama_3047	0.44	-2.8
3,625,139	+		Sama_3047	0.44	+1.4
3,625,140	-		Sama_3047	0.44	-1.0
3,625,140	-		Sama_3047	0.44	+2.0
3,625,140	-		Sama_3047	0.44	-1.4
3,625,158	+		Sama_3047	0.47	-1.2
3,625,158	+		Sama_3047	0.47	-0.0
3,625,158	+		Sama_3047	0.47	+0.6
3,625,303	+		Sama_3047	0.71	-1.6
3,625,304	-		Sama_3047	0.71	-0.4
3,625,397	-		Sama_3047	0.86	-0.1
3,625,397	-		Sama_3047	0.86	-0.6
3,625,424	-				+0.5
3,625,424	-				+0.3
3,625,424	-				-0.0
3,625,443	+				+0.0
3,625,444	-				-2.8
3,625,444	-				+0.7
3,625,444	-				-1.5
3,625,476	-				+1.9
3,625,510	+				+0.7
3,625,510	+				-0.1
3,625,510	+				-0.4
3,625,511	-				+0.0
3,625,511	-				+2.0
3,625,511	-				+1.2
3,625,511	-				-0.1
3,625,511	-				-0.7
3,625,511	-				+0.7
3,625,511	-				+0.6
3,625,511	-				-0.5
3,625,511	-				+0.0
3,625,513	+				-0.2
3,625,514	-				-1.2
3,625,514	-				+0.8
3,625,514	-				+0.6
3,625,514	-				-0.4
3,625,537	+				-0.6
3,625,538	-				+0.4
3,625,542	+				-2.8
3,625,610	+				+0.0
3,625,651	+				-1.5
3,625,651	+				-1.5
3,625,652	-				-1.8
3,625,653	+				+0.4
3,625,653	+				-1.2
3,625,661	+				+0.7
3,625,678	+				-0.7
3,625,678	+				-1.9
3,625,678	+				-0.3
3,625,678	+				-3.4
3,625,678	+				+0.0
3,625,678	+				-1.7
3,625,679	-				-1.4
3,625,990	+	tolC	Sama_3048	0.21	-1.7
3,626,004	+	tolC	Sama_3048	0.22	+0.6
3,626,070	+	tolC	Sama_3048	0.27	-1.5
3,626,145	+	tolC	Sama_3048	0.33	-3.3
3,626,145	+	tolC	Sama_3048	0.33	-2.5
3,626,145	+	tolC	Sama_3048	0.33	-1.0
3,626,145	+	tolC	Sama_3048	0.33	-1.7
3,626,145	+	tolC	Sama_3048	0.33	-1.2
3,626,145	+	tolC	Sama_3048	0.33	-1.5
3,626,239	+	tolC	Sama_3048	0.40	-2.0
3,626,239	+	tolC	Sama_3048	0.40	-0.4
3,626,239	+	tolC	Sama_3048	0.40	-1.0
3,626,239	+	tolC	Sama_3048	0.40	-0.4
3,626,239	+	tolC	Sama_3048	0.40	-2.1
3,626,240	-	tolC	Sama_3048	0.40	-0.4
3,626,297	+	tolC	Sama_3048	0.44	-1.0
3,626,313	+	tolC	Sama_3048	0.46	+0.6
3,626,313	+	tolC	Sama_3048	0.46	-1.5
3,626,313	+	tolC	Sama_3048	0.46	-1.2
3,626,313	+	tolC	Sama_3048	0.46	-1.5
3,626,348	+	tolC	Sama_3048	0.48	-1.4
3,626,348	+	tolC	Sama_3048	0.48	-2.3
3,626,348	+	tolC	Sama_3048	0.48	-1.2
3,626,348	+	tolC	Sama_3048	0.48	-1.0
3,626,348	+	tolC	Sama_3048	0.48	-1.2
3,626,354	+	tolC	Sama_3048	0.49	-1.2
3,626,354	+	tolC	Sama_3048	0.49	-2.3
3,626,444	+	tolC	Sama_3048	0.56	-1.5
3,626,471	+	tolC	Sama_3048	0.58	-0.7
3,626,544	+	tolC	Sama_3048	0.64	-1.0
3,626,580	+	tolC	Sama_3048	0.66	-2.1
3,626,580	+	tolC	Sama_3048	0.66	-1.4
3,626,612	+	tolC	Sama_3048	0.69	+0.0
3,626,612	+	tolC	Sama_3048	0.69	-2.4
3,626,650	+	tolC	Sama_3048	0.72	-1.4
3,626,650	+	tolC	Sama_3048	0.72	-0.7
3,626,664	+	tolC	Sama_3048	0.73	-1.7
3,626,664	+	tolC	Sama_3048	0.73	-1.0
3,626,664	+	tolC	Sama_3048	0.73	-1.8
3,626,666	+	tolC	Sama_3048	0.73	+0.2
3,626,666	+	tolC	Sama_3048	0.73	+0.0
3,626,666	+	tolC	Sama_3048	0.73	-2.4
3,626,666	+	tolC	Sama_3048	0.73	-1.0
3,626,666	+	tolC	Sama_3048	0.73	-2.9
3,626,666	+	tolC	Sama_3048	0.73	-1.7
3,626,666	+	tolC	Sama_3048	0.73	-1.0
3,626,666	+	tolC	Sama_3048	0.73	-1.0
3,626,666	+	tolC	Sama_3048	0.73	-1.0
3,626,670	+	tolC	Sama_3048	0.73	-2.4
3,626,670	+	tolC	Sama_3048	0.73	-1.8
3,626,670	+	tolC	Sama_3048	0.73	-1.4
3,626,670	+	tolC	Sama_3048	0.73	-1.4
3,626,670	+	tolC	Sama_3048	0.73	-1.8
3,626,670	+	tolC	Sama_3048	0.73	-3.3
3,626,671	-	tolC	Sama_3048	0.73	-2.5
3,626,692	+	tolC	Sama_3048	0.75	-2.5
3,626,703	+	tolC	Sama_3048	0.76	-1.0
3,626,725	+	tolC	Sama_3048	0.77	-1.2
3,626,725	+	tolC	Sama_3048	0.77	-0.4
3,626,729	+	tolC	Sama_3048	0.78	-1.5
3,626,765	+	tolC	Sama_3048	0.81	-0.7
3,626,775	+	tolC	Sama_3048	0.81	-1.0
3,626,775	+	tolC	Sama_3048	0.81	-2.0
3,626,775	+	tolC	Sama_3048	0.81	-1.2
3,626,775	+	tolC	Sama_3048	0.81	-1.2
3,626,851	+	tolC	Sama_3048	0.87	-1.0
3,626,851	+	tolC	Sama_3048	0.87	-1.8
3,626,851	+	tolC	Sama_3048	0.87	-0.7
3,626,851	+	tolC	Sama_3048	0.87	-1.0
3,626,870	+	tolC	Sama_3048	0.89	-2.4
3,626,897	+				-2.3
3,626,897	+				-1.7
3,626,897	+				-2.3
3,626,897	+				-0.4
3,626,916	+				-0.7
3,626,922	+				-1.8
3,627,029	-				+0.3
3,627,078	-				-0.4
3,627,078	-				-0.7
3,627,078	-				-1.1
3,627,118	-				-0.7
3,627,118	-				+0.3
3,627,129	+				-0.7
3,627,201	+		Sama_3049	0.17	-0.2
3,627,202	-		Sama_3049	0.17	+1.8
3,627,202	-		Sama_3049	0.17	+0.1
3,627,233	+		Sama_3049	0.21	-0.6
3,627,233	+		Sama_3049	0.21	+1.3
3,627,233	+		Sama_3049	0.21	-0.5
3,627,234	-		Sama_3049	0.21	+0.6
3,627,234	-		Sama_3049	0.21	-0.4
3,627,234	-		Sama_3049	0.21	-1.4
3,627,240	-		Sama_3049	0.22	-0.4
3,627,323	+		Sama_3049	0.33	+0.4
3,627,333	+		Sama_3049	0.35	+0.2
3,627,333	+		Sama_3049	0.35	-1.4
3,627,334	-		Sama_3049	0.35	+0.3
3,627,334	-		Sama_3049	0.35	-0.2
3,627,334	-		Sama_3049	0.35	+1.2
3,627,334	-		Sama_3049	0.35	+0.6
3,627,334	-		Sama_3049	0.35	-0.2
3,627,334	-		Sama_3049	0.35	-1.4
3,627,346	-		Sama_3049	0.36	-0.5
3,627,411	-		Sama_3049	0.45	+0.9
3,627,411	-		Sama_3049	0.45	-0.9
3,627,436	+		Sama_3049	0.49	+0.9
3,627,436	+		Sama_3049	0.49	-2.3
3,627,436	-		Sama_3049	0.49	+0.8
3,627,436	+		Sama_3049	0.49	-0.8
3,627,436	+		Sama_3049	0.49	+1.8
3,627,436	+		Sama_3049	0.49	-0.6
3,627,437	-		Sama_3049	0.49	-0.1
3,627,437	-		Sama_3049	0.49	+1.4
3,627,437	-		Sama_3049	0.49	+1.4
3,627,437	-		Sama_3049	0.49	+2.8
3,627,437	-		Sama_3049	0.49	-0.2
3,627,437	-		Sama_3049	0.49	-0.4
3,627,437	-		Sama_3049	0.49	+1.8
3,627,437	-		Sama_3049	0.49	+2.2
3,627,437	-		Sama_3049	0.49	+0.6
3,627,437	-		Sama_3049	0.49	+0.8
3,627,437	-		Sama_3049	0.49	+0.4
3,627,437	-		Sama_3049	0.49	+1.6
3,627,437	-		Sama_3049	0.49	-0.4
3,627,437	-		Sama_3049	0.49	-0.2
3,627,437	-		Sama_3049	0.49	-0.0
3,627,437	-		Sama_3049	0.49	+1.1
3,627,438	+		Sama_3049	0.49	-0.4
3,627,438	+		Sama_3049	0.49	-2.5
3,627,438	+		Sama_3049	0.49	+0.7
3,627,439	-		Sama_3049	0.49	+0.1
3,627,439	-		Sama_3049	0.49	+1.2
3,627,439	-		Sama_3049	0.49	+0.1
3,627,439	-		Sama_3049	0.49	-0.2
3,627,439	-		Sama_3049	0.49	+0.7
3,627,458	+		Sama_3049	0.52	-1.2
3,627,459	-		Sama_3049	0.52	-0.4
3,627,459	-		Sama_3049	0.52	-0.6
3,627,461	+		Sama_3049	0.52	+1.3
3,627,461	+		Sama_3049	0.52	+2.2
3,627,462	-		Sama_3049	0.52	+0.1
3,627,462	-		Sama_3049	0.52	+0.5
3,627,498	+		Sama_3049	0.57	-0.8
3,627,499	-		Sama_3049	0.57	+0.6
3,627,499	-		Sama_3049	0.57	+0.8
3,627,499	-		Sama_3049	0.57	+0.3
3,627,499	-		Sama_3049	0.57	+0.6
3,627,499	-		Sama_3049	0.57	+0.5
3,627,500	+		Sama_3049	0.57	+0.2
3,627,500	+		Sama_3049	0.57	-1.5
3,627,500	+		Sama_3049	0.57	-0.2
3,627,500	+		Sama_3049	0.57	-0.7
3,627,501	-		Sama_3049	0.57	+1.1
3,627,501	-		Sama_3049	0.57	+0.5
3,627,501	-		Sama_3049	0.57	+1.0
3,627,501	-		Sama_3049	0.57	+1.6
3,627,501	-		Sama_3049	0.57	+0.4
3,627,501	-		Sama_3049	0.57	+0.1
3,627,523	-		Sama_3049	0.60	-0.8
3,627,553	-		Sama_3049	0.64	+1.6
3,627,595	-		Sama_3049	0.70	-0.9
3,627,656	+		Sama_3049	0.78	-1.1
3,627,657	-		Sama_3049	0.78	+0.8
3,627,720	-		Sama_3049	0.87	+0.8
3,627,735	+		Sama_3049	0.89	-1.2
3,627,736	-		Sama_3049	0.89	+0.1
3,627,816	+				-0.4
3,627,817	-				+1.6
3,627,817	-				-0.0
3,627,820	+				+0.5
3,627,820	+				+0.1
3,627,844	-				+1.4
3,627,877	+				-0.4
3,627,877	+				+0.9
3,627,877	+				+0.4
3,627,877	+				-0.5
3,627,878	-				+1.7
3,627,878	-				+0.2
3,627,878	-				+0.7
3,627,878	-				+0.5
3,627,878	-				+0.1
3,627,878	-				+1.2
3,627,878	-				-0.2
3,627,878	-				-0.6
3,627,878	-				+1.5
3,627,878	-				+1.4
3,627,910	+				-0.9
3,627,910	+				-0.7
3,627,911	-				-0.3
3,627,911	-				-1.5
3,627,948	+		Sama_3050	0.13	+1.6
3,627,949	-		Sama_3050	0.13	+0.1
3,627,963	-		Sama_3050	0.15	+0.2
3,627,978	+		Sama_3050	0.16	+1.3
3,627,978	+		Sama_3050	0.16	+1.1
3,627,978	+		Sama_3050	0.16	+2.6
3,627,979	-		Sama_3050	0.16	+0.4
3,627,979	-		Sama_3050	0.16	+0.4
3,627,979	-		Sama_3050	0.16	-0.4
3,627,979	-		Sama_3050	0.16	+2.1
3,627,979	-		Sama_3050	0.16	+1.5
3,627,979	-		Sama_3050	0.16	+0.5
3,627,991	-		Sama_3050	0.18	-0.6
3,627,991	-		Sama_3050	0.18	+0.1