Strain Fitness in Shewanella amazonensis SB2B around Sama_3045

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,622,984	-				+0.5
3,623,055	+		Sama_3044	0.14	+2.8
3,623,056	-		Sama_3044	0.14	+1.4
3,623,056	-		Sama_3044	0.14	+0.9
3,623,056	-		Sama_3044	0.14	+1.2
3,623,056	-		Sama_3044	0.14	+0.2
3,623,056	-		Sama_3044	0.14	-1.2
3,623,056	-		Sama_3044	0.14	+1.0
3,623,074	+		Sama_3044	0.17	-2.1
3,623,074	+		Sama_3044	0.17	-0.2
3,623,075	-		Sama_3044	0.17	+0.0
3,623,075	-		Sama_3044	0.17	+1.0
3,623,075	-		Sama_3044	0.17	+0.7
3,623,077	+		Sama_3044	0.17	+0.0
3,623,077	+		Sama_3044	0.17	-0.0
3,623,078	-		Sama_3044	0.18	+2.7
3,623,078	-		Sama_3044	0.18	-1.0
3,623,078	-		Sama_3044	0.18	+0.6
3,623,099	-		Sama_3044	0.21	+1.0
3,623,125	-		Sama_3044	0.26	+2.4
3,623,125	-		Sama_3044	0.26	+0.0
3,623,125	-		Sama_3044	0.26	+0.6
3,623,125	-		Sama_3044	0.26	-0.6
3,623,125	-		Sama_3044	0.26	-0.0
3,623,130	+		Sama_3044	0.27	+0.3
3,623,171	-		Sama_3044	0.34	+1.2
3,623,209	+		Sama_3044	0.40	+0.6
3,623,210	-		Sama_3044	0.40	-0.4
3,623,210	-		Sama_3044	0.40	+1.8
3,623,210	-		Sama_3044	0.40	+1.4
3,623,224	+		Sama_3044	0.43	-1.4
3,623,224	+		Sama_3044	0.43	+0.4
3,623,224	+		Sama_3044	0.43	+1.6
3,623,225	-		Sama_3044	0.43	+2.2
3,623,225	-		Sama_3044	0.43	-1.7
3,623,231	+		Sama_3044	0.44	+0.1
3,623,232	-		Sama_3044	0.44	-0.5
3,623,266	+		Sama_3044	0.50	-0.7
3,623,267	-		Sama_3044	0.50	+0.8
3,623,308	+		Sama_3044	0.57	+0.6
3,623,323	+		Sama_3044	0.60	-2.0
3,623,323	+		Sama_3044	0.60	+1.3
3,623,323	+		Sama_3044	0.60	+0.2
3,623,323	+		Sama_3044	0.60	+1.5
3,623,323	+		Sama_3044	0.60	-0.4
3,623,323	+		Sama_3044	0.60	-0.5
3,623,323	+		Sama_3044	0.60	+0.5
3,623,324	-		Sama_3044	0.60	-0.2
3,623,324	-		Sama_3044	0.60	-1.7
3,623,324	-		Sama_3044	0.60	-0.7
3,623,324	-		Sama_3044	0.60	+1.1
3,623,324	-		Sama_3044	0.60	+0.7
3,623,324	-		Sama_3044	0.60	-0.4
3,623,324	-		Sama_3044	0.60	+2.0
3,623,324	-		Sama_3044	0.60	+0.8
3,623,324	-		Sama_3044	0.60	-1.7
3,623,324	-		Sama_3044	0.60	-2.0
3,623,397	+		Sama_3044	0.73	+1.6
3,623,397	+		Sama_3044	0.73	+0.9
3,623,398	-		Sama_3044	0.73	-0.4
3,623,398	-		Sama_3044	0.73	-0.7
3,623,398	-		Sama_3044	0.73	+1.4
3,623,430	-		Sama_3044	0.79	+1.2
3,623,430	-		Sama_3044	0.79	-1.2
3,623,430	-		Sama_3044	0.79	-0.3
3,623,439	+		Sama_3044	0.80	+1.1
3,623,439	+		Sama_3044	0.80	+1.8
3,623,499	+				+0.6
3,623,540	+				+0.8
3,623,540	+				-1.7
3,623,541	-				+0.4
3,623,542	+				+1.0
3,623,542	+				+2.0
3,623,542	+				+1.3
3,623,552	+				+1.1
3,623,552	+				+0.4
3,623,552	+				-1.8
3,623,552	+				+1.2
3,623,552	+				-0.7
3,623,552	+				+0.2
3,623,552	+				-0.0
3,623,552	+				+1.4
3,623,552	+				+0.4
3,623,552	+				+0.7
3,623,552	+				-1.2
3,623,552	+				-0.7
3,623,552	+				-2.0
3,623,552	+				+1.2
3,623,552	+				+1.6
3,623,552	+				+0.8
3,623,553	-				+0.6
3,623,553	-				+1.1
3,623,553	-				+0.4
3,623,553	-				+1.1
3,623,553	-				+0.5
3,623,553	-				-0.8
3,623,553	-				-1.5
3,623,553	-				+0.9
3,623,553	-				-3.8
3,623,553	-				+0.2
3,623,553	-				-0.8
3,623,553	-				+0.9
3,623,553	-				-1.2
3,623,553	-				-0.6
3,623,553	-				-0.3
3,623,553	-				-2.6
3,623,553	-				-1.0
3,623,553	-				+0.8
3,623,553	-				+0.6
3,623,553	-				-0.2
3,623,553	-				+0.4
3,623,553	-				-0.1
3,623,643	+				+0.6
3,623,644	-				-1.7
3,623,712	-		Sama_3045	0.16	-1.4
3,623,712	-		Sama_3045	0.16	-0.4
3,623,743	-		Sama_3045	0.19	-1.7
3,623,764	+		Sama_3045	0.22	+0.6
3,623,786	+		Sama_3045	0.24	-1.5
3,623,787	-		Sama_3045	0.25	+1.6
3,623,787	-		Sama_3045	0.25	+0.0
3,623,925	+		Sama_3045	0.41	+0.5
3,623,946	+		Sama_3045	0.43	-0.7
3,623,946	+		Sama_3045	0.43	-2.8
3,623,946	+		Sama_3045	0.43	-0.4
3,623,947	-		Sama_3045	0.44	-0.4
3,623,947	-		Sama_3045	0.44	-1.2
3,624,051	+		Sama_3045	0.56	+0.6
3,624,105	+		Sama_3045	0.62	-0.4
3,624,105	+		Sama_3045	0.62	-2.0
3,624,106	-		Sama_3045	0.62	+0.6
3,624,213	-		Sama_3045	0.75	-0.4
3,624,277	-		Sama_3045	0.83	+0.0
3,624,344	-				+0.6
3,624,421	+				-2.0
3,624,422	-				-2.5
3,624,422	-				-0.4
3,624,422	-				-1.2
3,624,422	-				-1.7
3,624,427	+				-0.4
3,624,438	-				-0.4
3,624,479	-		Sama_3046	0.10	-1.0
3,624,479	-		Sama_3046	0.10	-1.1
3,624,525	-		Sama_3046	0.21	-0.4
3,624,525	-		Sama_3046	0.21	+0.9
3,624,549	-		Sama_3046	0.27	+0.2
3,624,549	-		Sama_3046	0.27	-0.3
3,624,549	-		Sama_3046	0.27	+0.8
3,624,549	-		Sama_3046	0.27	+1.4
3,624,600	+		Sama_3046	0.39	-0.9
3,624,600	+		Sama_3046	0.39	-1.2
3,624,601	-		Sama_3046	0.39	+1.5
3,624,612	-		Sama_3046	0.42	+0.0
3,624,612	-		Sama_3046	0.42	+0.4
3,624,625	+		Sama_3046	0.45	-1.3
3,624,626	-		Sama_3046	0.45	+0.2
3,624,626	-		Sama_3046	0.45	-0.4
3,624,626	-		Sama_3046	0.45	+0.2
3,624,626	-		Sama_3046	0.45	+1.3
3,624,630	+		Sama_3046	0.46	-2.3
3,624,630	+		Sama_3046	0.46	-1.8
3,624,630	+		Sama_3046	0.46	+1.2
3,624,631	-		Sama_3046	0.46	+1.9
3,624,631	-		Sama_3046	0.46	-0.4
3,624,690	-		Sama_3046	0.60	-0.2
3,624,696	+		Sama_3046	0.62	-0.2
3,624,717	+		Sama_3046	0.67	-1.2
3,624,776	-		Sama_3046	0.81	-0.4
3,624,797	+		Sama_3046	0.86	-1.4
3,624,797	+		Sama_3046	0.86	+0.2
3,624,798	-		Sama_3046	0.86	-1.2
3,624,798	-		Sama_3046	0.86	+0.9
3,624,890	+				-0.2
3,624,890	+				-0.3
3,624,890	+				+0.3
3,624,890	+				-0.9
3,624,890	+				-2.0
3,624,890	+				+1.0
3,624,890	+				+1.0
3,624,891	-				-0.4
3,624,891	-				+1.3
3,624,891	-				-0.2
3,624,891	-				+1.0
3,624,891	-				-0.7
3,624,891	-				+1.9
3,624,891	-				+1.0
3,624,891	-				-0.4
3,624,891	-				+0.6
3,624,891	-				+1.4
3,624,891	-				+0.6
3,624,900	+				-0.2
3,624,938	+		Sama_3047	0.12	-1.5
3,624,939	-		Sama_3047	0.12	+0.6
3,624,967	+		Sama_3047	0.16	-1.1
3,624,968	-		Sama_3047	0.16	+1.3
3,624,968	-		Sama_3047	0.16	+0.4
3,625,001	+		Sama_3047	0.22	+0.2
3,625,001	+		Sama_3047	0.22	-0.8
3,625,001	+		Sama_3047	0.22	+0.2
3,625,002	-		Sama_3047	0.22	-2.6
3,625,072	+		Sama_3047	0.33	-2.0
3,625,109	-		Sama_3047	0.39	+0.0
3,625,109	-		Sama_3047	0.39	-2.0
3,625,109	-		Sama_3047	0.39	-0.7
3,625,109	-		Sama_3047	0.39	-0.2
3,625,109	-		Sama_3047	0.39	-0.0
3,625,109	-		Sama_3047	0.39	+0.9
3,625,109	-		Sama_3047	0.39	-0.3
3,625,139	+		Sama_3047	0.44	+1.6
3,625,139	+		Sama_3047	0.44	-1.7
3,625,139	+		Sama_3047	0.44	-2.8
3,625,139	+		Sama_3047	0.44	+1.4
3,625,140	-		Sama_3047	0.44	-1.0
3,625,140	-		Sama_3047	0.44	+2.0
3,625,140	-		Sama_3047	0.44	-1.4
3,625,158	+		Sama_3047	0.47	-1.2
3,625,158	+		Sama_3047	0.47	-0.0
3,625,158	+		Sama_3047	0.47	+0.6
3,625,303	+		Sama_3047	0.71	-1.6
3,625,304	-		Sama_3047	0.71	-0.4
3,625,397	-		Sama_3047	0.86	-0.1
3,625,397	-		Sama_3047	0.86	-0.6