Strain Fitness in Shewanella amazonensis SB2B around Sama_3021

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,594,349	+		Sama_3020	0.18	+0.3
3,594,349	+		Sama_3020	0.18	+0.0
3,594,349	+		Sama_3020	0.18	-2.5
3,594,381	-		Sama_3020	0.21	-0.7
3,594,448	-		Sama_3020	0.27	-1.7
3,594,462	+		Sama_3020	0.28	-1.6
3,594,462	+		Sama_3020	0.28	-0.7
3,594,462	+		Sama_3020	0.28	-1.6
3,594,463	-		Sama_3020	0.28	-0.7
3,594,463	-		Sama_3020	0.28	-2.5
3,594,467	+		Sama_3020	0.28	-1.6
3,594,518	-		Sama_3020	0.32	-1.6
3,594,534	+		Sama_3020	0.34	-1.7
3,594,534	+		Sama_3020	0.34	-0.7
3,594,534	+		Sama_3020	0.34	+0.0
3,594,534	+		Sama_3020	0.34	-1.0
3,594,535	-		Sama_3020	0.34	-1.6
3,594,535	-		Sama_3020	0.34	-0.8
3,594,535	-		Sama_3020	0.34	-2.6
3,594,535	-		Sama_3020	0.34	-1.0
3,594,535	-		Sama_3020	0.34	+0.0
3,594,567	+		Sama_3020	0.36	-0.7
3,594,568	-		Sama_3020	0.36	-1.2
3,594,568	-		Sama_3020	0.36	-2.6
3,594,568	-		Sama_3020	0.36	-1.8
3,594,578	+		Sama_3020	0.37	-2.7
3,594,578	+		Sama_3020	0.37	-2.3
3,594,579	-		Sama_3020	0.37	-3.2
3,594,579	-		Sama_3020	0.37	-1.4
3,594,618	+		Sama_3020	0.41	+0.0
3,594,618	+		Sama_3020	0.41	-2.7
3,594,619	-		Sama_3020	0.41	-0.4
3,594,622	-		Sama_3020	0.41	-3.7
3,594,622	-		Sama_3020	0.41	-1.4
3,594,622	-		Sama_3020	0.41	-2.8
3,594,622	-		Sama_3020	0.41	-2.1
3,594,622	-		Sama_3020	0.41	+0.0
3,594,638	-		Sama_3020	0.42	-2.0
3,594,638	-		Sama_3020	0.42	-2.9
3,594,809	+		Sama_3020	0.56	-2.0
3,594,816	+		Sama_3020	0.57	-0.7
3,594,817	-		Sama_3020	0.57	-0.2
3,594,854	-		Sama_3020	0.60	-2.7
3,594,880	+		Sama_3020	0.62	+1.4
3,594,880	+		Sama_3020	0.62	-0.6
3,594,881	-		Sama_3020	0.62	-1.7
3,594,881	-		Sama_3020	0.62	-1.4
3,594,881	-		Sama_3020	0.62	-1.4
3,594,881	-		Sama_3020	0.62	-1.2
3,594,881	-		Sama_3020	0.62	-1.7
3,594,881	-		Sama_3020	0.62	-1.2
3,594,884	+		Sama_3020	0.62	-1.0
3,594,884	+		Sama_3020	0.62	-1.0
3,594,885	-		Sama_3020	0.63	-0.4
3,594,885	-		Sama_3020	0.63	+0.3
3,594,900	+		Sama_3020	0.64	-0.8
3,594,901	-		Sama_3020	0.64	-1.8
3,594,901	-		Sama_3020	0.64	-1.8
3,594,927	+		Sama_3020	0.66	-1.8
3,594,928	-		Sama_3020	0.66	+1.0
3,594,928	-		Sama_3020	0.66	-1.9
3,594,971	-		Sama_3020	0.70	-2.0
3,594,971	-		Sama_3020	0.70	-3.1
3,595,015	-		Sama_3020	0.73	-2.3
3,595,015	-		Sama_3020	0.73	-1.4
3,595,018	+		Sama_3020	0.73	-0.6
3,595,018	+		Sama_3020	0.73	-1.2
3,595,018	+		Sama_3020	0.73	-1.2
3,595,019	-		Sama_3020	0.74	-0.3
3,595,019	-		Sama_3020	0.74	-1.2
3,595,041	+		Sama_3020	0.75	-0.3
3,595,041	+		Sama_3020	0.75	-1.0
3,595,042	-		Sama_3020	0.75	-1.6
3,595,042	-		Sama_3020	0.75	-2.0
3,595,042	-		Sama_3020	0.75	-2.1
3,595,042	-		Sama_3020	0.75	-2.3
3,595,042	-		Sama_3020	0.75	-1.4
3,595,042	-		Sama_3020	0.75	-1.2
3,595,042	-		Sama_3020	0.75	-0.7
3,595,042	-		Sama_3020	0.75	-3.2
3,595,043	+		Sama_3020	0.76	-0.7
3,595,043	+		Sama_3020	0.76	-1.7
3,595,043	+		Sama_3020	0.76	+0.6
3,595,044	-		Sama_3020	0.76	+0.3
3,595,044	-		Sama_3020	0.76	-1.6
3,595,044	-		Sama_3020	0.76	-1.8
3,595,044	-		Sama_3020	0.76	-2.5
3,595,044	-		Sama_3020	0.76	+0.6
3,595,044	-		Sama_3020	0.76	-2.0
3,595,044	-		Sama_3020	0.76	-2.0
3,595,081	+		Sama_3020	0.79	-2.2
3,595,081	+		Sama_3020	0.79	-1.0
3,595,081	+		Sama_3020	0.79	+0.0
3,595,081	+		Sama_3020	0.79	-1.2
3,595,081	+		Sama_3020	0.79	-1.7
3,595,082	-		Sama_3020	0.79	-2.8
3,595,082	-		Sama_3020	0.79	-1.1
3,595,082	-		Sama_3020	0.79	-1.6
3,595,082	-		Sama_3020	0.79	-0.5
3,595,083	+		Sama_3020	0.79	-0.4
3,595,083	+		Sama_3020	0.79	-1.0
3,595,083	+		Sama_3020	0.79	+0.0
3,595,084	-		Sama_3020	0.79	-1.6
3,595,084	-		Sama_3020	0.79	-1.4
3,595,084	-		Sama_3020	0.79	-0.4
3,595,102	-		Sama_3020	0.80	-1.0
3,595,102	-		Sama_3020	0.80	-0.3
3,595,122	+		Sama_3020	0.82	-1.0
3,595,122	+		Sama_3020	0.82	-1.7
3,595,122	+		Sama_3020	0.82	-2.4
3,595,123	-		Sama_3020	0.82	-1.0
3,595,123	-		Sama_3020	0.82	-1.6
3,595,123	-		Sama_3020	0.82	-0.4
3,595,123	-		Sama_3020	0.82	-1.5
3,595,123	-		Sama_3020	0.82	-0.6
3,595,123	-		Sama_3020	0.82	-1.8
3,595,157	+		Sama_3020	0.85	-1.1
3,595,157	+		Sama_3020	0.85	-2.4
3,595,157	+		Sama_3020	0.85	-2.0
3,595,157	+		Sama_3020	0.85	-1.2
3,595,157	+		Sama_3020	0.85	-1.4
3,595,158	-		Sama_3020	0.85	-1.0
3,595,158	-		Sama_3020	0.85	-1.4
3,595,158	-		Sama_3020	0.85	-0.2
3,595,158	-		Sama_3020	0.85	-1.1
3,595,158	-		Sama_3020	0.85	-0.5
3,595,158	-		Sama_3020	0.85	-2.2
3,595,158	-		Sama_3020	0.85	-1.8
3,595,158	-		Sama_3020	0.85	-1.2
3,595,158	-		Sama_3020	0.85	-1.0
3,595,158	-		Sama_3020	0.85	-1.1
3,595,161	+		Sama_3020	0.85	+1.0
3,595,161	+		Sama_3020	0.85	-2.6
3,595,161	+		Sama_3020	0.85	-2.2
3,595,161	+		Sama_3020	0.85	-0.8
3,595,161	+		Sama_3020	0.85	+0.4
3,595,161	+		Sama_3020	0.85	-0.4
3,595,161	+		Sama_3020	0.85	-1.2
3,595,162	-		Sama_3020	0.85	-1.3
3,595,162	-		Sama_3020	0.85	-1.3
3,595,162	-		Sama_3020	0.85	-1.6
3,595,162	-		Sama_3020	0.85	+0.6
3,595,162	-		Sama_3020	0.85	-0.2
3,595,162	-		Sama_3020	0.85	-1.0
3,595,181	-		Sama_3020	0.87	-0.2
3,595,244	-				-1.4
3,595,264	-				-1.5
3,595,283	-				-1.1
3,595,284	+				-1.4
3,595,284	+				-1.1
3,595,284	+				-1.8
3,595,284	+				-1.5
3,595,284	+				-1.7
3,595,285	-				-1.8
3,595,285	-				-0.4
3,595,285	-				-2.8
3,595,285	-				-1.7
3,595,324	+				-1.4
3,595,333	+				-0.8
3,595,333	+				-2.5
3,595,334	-				-2.6
3,595,341	-				-0.2
3,595,341	-				-2.3
3,595,389	-				+0.2
3,595,438	+		Sama_3021	0.17	+2.6
3,595,438	+		Sama_3021	0.17	-2.2
3,595,495	+		Sama_3021	0.26	-0.4
3,595,495	+		Sama_3021	0.26	-2.2
3,595,495	+		Sama_3021	0.26	-1.0
3,595,495	+		Sama_3021	0.26	-1.8
3,595,495	+		Sama_3021	0.26	-1.1
3,595,496	-		Sama_3021	0.27	-2.0
3,595,496	-		Sama_3021	0.27	+1.1
3,595,496	-		Sama_3021	0.27	-1.4
3,595,496	-		Sama_3021	0.27	+0.0
3,595,532	+		Sama_3021	0.33	-1.4
3,595,532	+		Sama_3021	0.33	-2.7
3,595,533	-		Sama_3021	0.33	-2.0
3,595,533	-		Sama_3021	0.33	-2.2
3,595,536	+		Sama_3021	0.33	-1.2
3,595,537	-		Sama_3021	0.34	-2.3
3,595,558	-		Sama_3021	0.37	-1.0
3,595,563	+		Sama_3021	0.38	+0.6
3,595,563	+		Sama_3021	0.38	-1.7
3,595,564	-		Sama_3021	0.38	-1.7
3,595,580	+		Sama_3021	0.41	-2.8
3,595,581	-		Sama_3021	0.41	-2.7
3,595,594	-		Sama_3021	0.43	-3.0
3,595,594	-		Sama_3021	0.43	-1.4
3,595,600	+		Sama_3021	0.44	-0.7
3,595,600	+		Sama_3021	0.44	+2.2
3,595,600	+		Sama_3021	0.44	-0.8
3,595,616	+		Sama_3021	0.47	-0.4
3,595,617	-		Sama_3021	0.47	-0.9
3,595,630	+		Sama_3021	0.49	+0.9
3,595,630	+		Sama_3021	0.49	-0.4
3,595,630	+		Sama_3021	0.49	-0.7
3,595,630	+		Sama_3021	0.49	-0.7
3,595,631	-		Sama_3021	0.49	-1.4
3,595,631	-		Sama_3021	0.49	-1.2
3,595,631	-		Sama_3021	0.49	-1.0
3,595,631	-		Sama_3021	0.49	-0.2
3,595,683	+		Sama_3021	0.58	-1.2
3,595,684	-		Sama_3021	0.58	-2.0
3,595,705	+		Sama_3021	0.62	-1.4
3,595,705	+		Sama_3021	0.62	-1.4
3,595,705	+		Sama_3021	0.62	-2.2
3,595,705	+		Sama_3021	0.62	-1.3
3,595,723	-		Sama_3021	0.65	-4.0
3,595,735	+		Sama_3021	0.67	-1.7
3,595,735	+		Sama_3021	0.67	-1.7
3,595,735	+		Sama_3021	0.67	-2.0
3,595,736	-		Sama_3021	0.67	-2.2
3,595,770	+		Sama_3021	0.73	-1.7
3,595,770	+		Sama_3021	0.73	-0.8
3,595,771	-		Sama_3021	0.73	-2.0
3,595,771	-		Sama_3021	0.73	-1.2
3,595,771	-		Sama_3021	0.73	-0.9
3,595,771	-		Sama_3021	0.73	-1.8
3,595,771	-		Sama_3021	0.73	-1.5
3,595,773	+		Sama_3021	0.73	-1.8
3,595,774	-		Sama_3021	0.74	-1.2
3,595,774	-		Sama_3021	0.74	-2.4
3,595,774	-		Sama_3021	0.74	-2.5
3,595,774	-		Sama_3021	0.74	-1.4
3,595,830	+		Sama_3021	0.83	-1.0
3,595,843	+		Sama_3021	0.85	-0.8
3,595,871	-				-1.0
3,595,936	-				-1.5
3,596,030	+				-2.3
3,596,031	-				-0.7
3,596,031	-				-0.8
3,596,033	-				+0.0
3,596,073	+				-1.6
3,596,073	+				-0.1
3,596,073	+				+0.1
3,596,073	+				+0.4
3,596,073	+				-1.1
3,596,073	+				-0.4
3,596,073	+				-1.2
3,596,074	-				-1.5
3,596,074	-				-1.8
3,596,074	-				-0.4
3,596,074	-				+0.8
3,596,074	-				+1.3
3,596,074	-				+0.1
3,596,074	-				+0.3
3,596,086	+				-2.2
3,596,114	-				+1.1
3,596,123	+				+0.0
3,596,123	+				+1.8
3,596,124	-				-0.5
3,596,124	-				-1.0
3,596,148	-				-1.4
3,596,149	+				-0.5
3,596,149	+				-0.7
3,596,178	+				+0.5
3,596,178	+				+0.0
3,596,179	-				-0.1
3,596,222	+				-1.3
3,596,222	+				+1.8
3,596,242	-				-0.4
3,596,258	-				-0.4
3,596,279	+				-0.4
3,596,280	-				-1.5
3,596,280	-				+0.6
3,596,348	-				-3.0
3,596,348	-				-0.4
3,596,348	-				+0.0
3,596,348	-				-1.2
3,596,355	+		Sama_3022	0.11	-2.6
3,596,396	-		Sama_3022	0.15	-1.2
3,596,407	+		Sama_3022	0.16	-2.0
3,596,422	-		Sama_3022	0.18	-0.4
3,596,422	-		Sama_3022	0.18	-2.5
3,596,577	-		Sama_3022	0.35	-3.3
3,596,577	-		Sama_3022	0.35	-3.1
3,596,577	-		Sama_3022	0.35	-1.0
3,596,616	-		Sama_3022	0.39	-2.8
3,596,632	-		Sama_3022	0.41	-2.0
3,596,632	-		Sama_3022	0.41	-1.2
3,596,864	-		Sama_3022	0.66	-2.1
3,596,867	-		Sama_3022	0.66	-2.7
3,596,900	-		Sama_3022	0.69	-2.7
3,596,900	-		Sama_3022	0.69	-1.7