Strain Fitness in Shewanella amazonensis SB2B around Sama_3019

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,592,429	+		Sama_3017	0.40	-1.0
3,592,429	+		Sama_3017	0.40	-2.1
3,592,429	+		Sama_3017	0.40	-0.6
3,592,430	-		Sama_3017	0.40	-2.9
3,592,430	-		Sama_3017	0.40	-2.3
3,592,430	-		Sama_3017	0.40	-0.7
3,592,430	-		Sama_3017	0.40	-0.6
3,592,430	-		Sama_3017	0.40	-1.4
3,592,430	-		Sama_3017	0.40	-0.7
3,592,455	+		Sama_3017	0.46	-0.7
3,592,456	-		Sama_3017	0.46	-0.7
3,592,456	-		Sama_3017	0.46	+0.6
3,592,456	-		Sama_3017	0.46	+0.2
3,592,459	-		Sama_3017	0.47	-0.4
3,592,459	-		Sama_3017	0.47	-0.1
3,592,459	-		Sama_3017	0.47	-1.8
3,592,459	-		Sama_3017	0.47	-1.2
3,592,493	+		Sama_3017	0.54	-1.6
3,592,493	+		Sama_3017	0.54	-1.0
3,592,576	+		Sama_3017	0.72	-0.5
3,592,576	+		Sama_3017	0.72	+0.9
3,592,576	+		Sama_3017	0.72	-0.1
3,592,577	-		Sama_3017	0.72	-0.3
3,592,577	-		Sama_3017	0.72	-2.0
3,592,577	-		Sama_3017	0.72	+1.6
3,592,577	-		Sama_3017	0.72	-1.4
3,592,577	-		Sama_3017	0.72	+1.3
3,592,577	-		Sama_3017	0.72	-1.6
3,592,577	-		Sama_3017	0.72	-1.6
3,592,577	-		Sama_3017	0.72	+0.3
3,592,577	-		Sama_3017	0.72	+0.1
3,592,577	-		Sama_3017	0.72	+0.6
3,592,606	+		Sama_3017	0.79	-0.5
3,592,606	+		Sama_3017	0.79	-0.1
3,592,607	-		Sama_3017	0.79	+0.2
3,592,607	-		Sama_3017	0.79	+0.9
3,592,607	-		Sama_3017	0.79	+0.1
3,592,614	+		Sama_3017	0.80	+0.6
3,592,614	+		Sama_3017	0.80	+0.1
3,592,617	+		Sama_3017	0.81	-1.7
3,592,617	+		Sama_3017	0.81	+0.4
3,592,617	+		Sama_3017	0.81	+0.9
3,592,617	+		Sama_3017	0.81	+1.0
3,592,618	-		Sama_3017	0.81	-1.2
3,592,620	+		Sama_3017	0.82	+0.6
3,592,620	+		Sama_3017	0.82	+0.0
3,592,620	+		Sama_3017	0.82	-1.0
3,592,620	+		Sama_3017	0.82	-0.4
3,592,621	-		Sama_3017	0.82	-0.6
3,592,621	-		Sama_3017	0.82	-0.5
3,592,621	-		Sama_3017	0.82	-0.1
3,592,621	-		Sama_3017	0.82	+1.3
3,592,621	-		Sama_3017	0.82	-1.3
3,592,631	+		Sama_3017	0.84	+0.4
3,592,657	+		Sama_3017	0.90	+2.1
3,592,657	+		Sama_3017	0.90	+0.3
3,592,658	-				+0.0
3,592,658	-				-1.0
3,592,658	-				+0.3
3,592,658	-				-0.3
3,592,658	-				-0.1
3,592,658	-				-0.2
3,592,661	-				-0.8
3,592,661	-				-1.2
3,592,704	+				+1.1
3,592,704	+				-1.7
3,592,704	+				+2.4
3,592,704	+				-1.1
3,592,704	+				+0.0
3,592,705	-				-0.4
3,592,705	-				-1.3
3,592,705	-				+1.1
3,592,708	+				-1.0
3,592,708	+				+0.6
3,592,708	+				+0.8
3,592,708	+				+0.0
3,592,708	+				-0.7
3,592,709	-				-0.1
3,592,709	-				-2.0
3,592,709	-				+1.3
3,592,709	-				-1.2
3,592,709	-				-0.8
3,592,709	-				-0.4
3,592,709	-				+0.6
3,592,709	-				+1.3
3,592,709	-				+0.3
3,592,782	+	sspA	Sama_3018	0.13	+0.6
3,592,782	+	sspA	Sama_3018	0.13	-0.7
3,592,782	+	sspA	Sama_3018	0.13	+0.6
3,592,782	+	sspA	Sama_3018	0.13	-1.2
3,592,782	+	sspA	Sama_3018	0.13	+0.6
3,592,783	-	sspA	Sama_3018	0.13	-1.4
3,592,783	-	sspA	Sama_3018	0.13	+0.6
3,592,783	-	sspA	Sama_3018	0.13	+0.0
3,592,783	-	sspA	Sama_3018	0.13	+0.6
3,592,783	-	sspA	Sama_3018	0.13	-0.7
3,592,783	-	sspA	Sama_3018	0.13	+0.6
3,592,783	-	sspA	Sama_3018	0.13	-0.4
3,592,783	-	sspA	Sama_3018	0.13	+0.6
3,592,783	-	sspA	Sama_3018	0.13	+0.6
3,592,860	+	sspA	Sama_3018	0.25	-1.6
3,592,892	-	sspA	Sama_3018	0.30	+0.6
3,592,892	-	sspA	Sama_3018	0.30	-0.4
3,592,892	-	sspA	Sama_3018	0.30	-0.4
3,592,896	+	sspA	Sama_3018	0.31	+1.6
3,592,897	-	sspA	Sama_3018	0.31	+0.6
3,592,897	-	sspA	Sama_3018	0.31	-1.8
3,592,952	-	sspA	Sama_3018	0.40	-1.2
3,593,001	+	sspA	Sama_3018	0.47	+0.0
3,593,002	-	sspA	Sama_3018	0.47	-1.6
3,593,101	-	sspA	Sama_3018	0.63	-1.4
3,593,101	-	sspA	Sama_3018	0.63	-2.0
3,593,125	-	sspA	Sama_3018	0.67	+0.0
3,593,125	-	sspA	Sama_3018	0.67	-0.7
3,593,125	-	sspA	Sama_3018	0.67	-2.0
3,593,125	-	sspA	Sama_3018	0.67	-1.7
3,593,164	+	sspA	Sama_3018	0.73	+0.0
3,593,165	-	sspA	Sama_3018	0.73	+0.3
3,593,165	-	sspA	Sama_3018	0.73	-1.2
3,593,165	-	sspA	Sama_3018	0.73	-1.0
3,593,165	-	sspA	Sama_3018	0.73	+0.0
3,593,165	-	sspA	Sama_3018	0.73	-1.0
3,593,165	-	sspA	Sama_3018	0.73	+0.0
3,593,166	+	sspA	Sama_3018	0.73	-1.0
3,593,167	-	sspA	Sama_3018	0.74	+0.0
3,593,167	-	sspA	Sama_3018	0.74	+0.6
3,593,216	+	sspA	Sama_3018	0.81	-1.0
3,593,217	-	sspA	Sama_3018	0.82	-1.0
3,593,217	-	sspA	Sama_3018	0.82	-1.4
3,593,217	-	sspA	Sama_3018	0.82	-1.0
3,593,217	-	sspA	Sama_3018	0.82	+0.4
3,593,306	-				-0.7
3,593,306	-				+1.6
3,593,306	-				-2.0
3,593,307	-				+0.0
3,593,337	-				+0.0
3,593,359	-				-0.6
3,593,363	+				+2.2
3,593,363	+				-1.2
3,593,406	+				-1.6
3,593,407	-				-1.2
3,593,407	-				-2.0
3,593,419	-				+0.3
3,593,426	-				+0.3
3,593,433	+				-0.8
3,593,434	-				-0.6
3,593,434	-				-0.9
3,593,434	-				-1.7
3,593,434	-				+0.6
3,593,434	-				-2.1
3,593,434	-				-2.7
3,593,464	+				-3.2
3,593,464	+				-1.6
3,593,465	-				-1.8
3,593,483	+				-1.3
3,593,484	-				-1.3
3,593,508	-		Sama_3019	0.12	-3.5
3,593,534	+		Sama_3019	0.15	-0.8
3,593,534	+		Sama_3019	0.15	-2.1
3,593,548	+		Sama_3019	0.17	-1.1
3,593,587	+		Sama_3019	0.23	-1.8
3,593,697	+		Sama_3019	0.39	-1.3
3,593,698	-		Sama_3019	0.39	-1.8
3,593,698	-		Sama_3019	0.39	-2.3
3,593,698	-		Sama_3019	0.39	-1.8
3,593,737	+		Sama_3019	0.44	-1.0
3,593,737	+		Sama_3019	0.44	-1.5
3,593,737	+		Sama_3019	0.44	-2.0
3,593,737	+		Sama_3019	0.44	-1.6
3,593,738	-		Sama_3019	0.44	-0.7
3,593,758	+		Sama_3019	0.47	-0.7
3,593,944	+		Sama_3019	0.74	+0.0
3,593,944	+		Sama_3019	0.74	-2.3
3,593,944	+		Sama_3019	0.74	-1.2
3,593,945	-		Sama_3019	0.74	-2.3
3,593,953	+		Sama_3019	0.75	-1.6
3,594,115	-				-1.6
3,594,115	-				-1.7
3,594,126	+				-1.0
3,594,127	-				-2.4
3,594,130	+				-1.6
3,594,131	-				-0.6
3,594,175	-				-0.6
3,594,204	+				-1.6
3,594,204	+				-1.2
3,594,205	-				-2.5
3,594,205	-				-1.6
3,594,268	-		Sama_3020	0.12	-1.8
3,594,349	+		Sama_3020	0.18	+0.3
3,594,349	+		Sama_3020	0.18	+0.0
3,594,349	+		Sama_3020	0.18	-2.5
3,594,381	-		Sama_3020	0.21	-0.7
3,594,448	-		Sama_3020	0.27	-1.7
3,594,462	+		Sama_3020	0.28	-1.6
3,594,462	+		Sama_3020	0.28	-0.7
3,594,462	+		Sama_3020	0.28	-1.6
3,594,463	-		Sama_3020	0.28	-0.7
3,594,463	-		Sama_3020	0.28	-2.5
3,594,467	+		Sama_3020	0.28	-1.6
3,594,518	-		Sama_3020	0.32	-1.6
3,594,534	+		Sama_3020	0.34	-1.7
3,594,534	+		Sama_3020	0.34	-0.7
3,594,534	+		Sama_3020	0.34	+0.0
3,594,534	+		Sama_3020	0.34	-1.0
3,594,535	-		Sama_3020	0.34	-1.6
3,594,535	-		Sama_3020	0.34	-0.8
3,594,535	-		Sama_3020	0.34	-2.6
3,594,535	-		Sama_3020	0.34	-1.0
3,594,535	-		Sama_3020	0.34	+0.0
3,594,567	+		Sama_3020	0.36	-0.7
3,594,568	-		Sama_3020	0.36	-1.2
3,594,568	-		Sama_3020	0.36	-2.6
3,594,568	-		Sama_3020	0.36	-1.8
3,594,578	+		Sama_3020	0.37	-2.7
3,594,578	+		Sama_3020	0.37	-2.3
3,594,579	-		Sama_3020	0.37	-3.2
3,594,579	-		Sama_3020	0.37	-1.4
3,594,618	+		Sama_3020	0.41	+0.0
3,594,618	+		Sama_3020	0.41	-2.7
3,594,619	-		Sama_3020	0.41	-0.4
3,594,622	-		Sama_3020	0.41	-3.7
3,594,622	-		Sama_3020	0.41	-1.4
3,594,622	-		Sama_3020	0.41	-2.8
3,594,622	-		Sama_3020	0.41	-2.1
3,594,622	-		Sama_3020	0.41	+0.0
3,594,638	-		Sama_3020	0.42	-2.0
3,594,638	-		Sama_3020	0.42	-2.9
3,594,809	+		Sama_3020	0.56	-2.0
3,594,816	+		Sama_3020	0.57	-0.7
3,594,817	-		Sama_3020	0.57	-0.2
3,594,854	-		Sama_3020	0.60	-2.7
3,594,880	+		Sama_3020	0.62	+1.4
3,594,880	+		Sama_3020	0.62	-0.6
3,594,881	-		Sama_3020	0.62	-1.7
3,594,881	-		Sama_3020	0.62	-1.4
3,594,881	-		Sama_3020	0.62	-1.4
3,594,881	-		Sama_3020	0.62	-1.2
3,594,881	-		Sama_3020	0.62	-1.7
3,594,881	-		Sama_3020	0.62	-1.2
3,594,884	+		Sama_3020	0.62	-1.0
3,594,884	+		Sama_3020	0.62	-1.0
3,594,885	-		Sama_3020	0.63	-0.4
3,594,885	-		Sama_3020	0.63	+0.3
3,594,900	+		Sama_3020	0.64	-0.8
3,594,901	-		Sama_3020	0.64	-1.8
3,594,901	-		Sama_3020	0.64	-1.8
3,594,927	+		Sama_3020	0.66	-1.8
3,594,928	-		Sama_3020	0.66	+1.0
3,594,928	-		Sama_3020	0.66	-1.9
3,594,971	-		Sama_3020	0.70	-2.0
3,594,971	-		Sama_3020	0.70	-3.1
3,595,015	-		Sama_3020	0.73	-2.3
3,595,015	-		Sama_3020	0.73	-1.4
3,595,018	+		Sama_3020	0.73	-0.6
3,595,018	+		Sama_3020	0.73	-1.2
3,595,018	+		Sama_3020	0.73	-1.2
3,595,019	-		Sama_3020	0.74	-0.3
3,595,019	-		Sama_3020	0.74	-1.2
3,595,041	+		Sama_3020	0.75	-0.3
3,595,041	+		Sama_3020	0.75	-1.0
3,595,042	-		Sama_3020	0.75	-1.6
3,595,042	-		Sama_3020	0.75	-2.0
3,595,042	-		Sama_3020	0.75	-2.1
3,595,042	-		Sama_3020	0.75	-2.3
3,595,042	-		Sama_3020	0.75	-1.4
3,595,042	-		Sama_3020	0.75	-1.2
3,595,042	-		Sama_3020	0.75	-0.7
3,595,042	-		Sama_3020	0.75	-3.2
3,595,043	+		Sama_3020	0.76	-0.7
3,595,043	+		Sama_3020	0.76	-1.7
3,595,043	+		Sama_3020	0.76	+0.6
3,595,044	-		Sama_3020	0.76	+0.3
3,595,044	-		Sama_3020	0.76	-1.6
3,595,044	-		Sama_3020	0.76	-1.8
3,595,044	-		Sama_3020	0.76	-2.5
3,595,044	-		Sama_3020	0.76	+0.6
3,595,044	-		Sama_3020	0.76	-2.0
3,595,044	-		Sama_3020	0.76	-2.0
3,595,081	+		Sama_3020	0.79	-2.2
3,595,081	+		Sama_3020	0.79	-1.0
3,595,081	+		Sama_3020	0.79	+0.0
3,595,081	+		Sama_3020	0.79	-1.2
3,595,081	+		Sama_3020	0.79	-1.7
3,595,082	-		Sama_3020	0.79	-2.8
3,595,082	-		Sama_3020	0.79	-1.1
3,595,082	-		Sama_3020	0.79	-1.6
3,595,082	-		Sama_3020	0.79	-0.5
3,595,083	+		Sama_3020	0.79	-0.4
3,595,083	+		Sama_3020	0.79	-1.0
3,595,083	+		Sama_3020	0.79	+0.0
3,595,084	-		Sama_3020	0.79	-1.6
3,595,084	-		Sama_3020	0.79	-1.4
3,595,084	-		Sama_3020	0.79	-0.4
3,595,102	-		Sama_3020	0.80	-1.0
3,595,102	-		Sama_3020	0.80	-0.3
3,595,122	+		Sama_3020	0.82	-1.0
3,595,122	+		Sama_3020	0.82	-1.7
3,595,122	+		Sama_3020	0.82	-2.4
3,595,123	-		Sama_3020	0.82	-1.0
3,595,123	-		Sama_3020	0.82	-1.6
3,595,123	-		Sama_3020	0.82	-0.4
3,595,123	-		Sama_3020	0.82	-1.5
3,595,123	-		Sama_3020	0.82	-0.6
3,595,123	-		Sama_3020	0.82	-1.8