Strain Fitness in Shewanella amazonensis SB2B around Sama_3008

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,579,382	+		Sama_3007	0.33	+1.0
3,579,383	-		Sama_3007	0.33	-0.9
3,579,397	-		Sama_3007	0.34	+0.2
3,579,410	+		Sama_3007	0.35	+0.6
3,579,410	+		Sama_3007	0.35	+0.3
3,579,410	+		Sama_3007	0.35	-0.0
3,579,410	+		Sama_3007	0.35	-0.1
3,579,410	+		Sama_3007	0.35	-0.4
3,579,411	-		Sama_3007	0.35	+0.0
3,579,411	-		Sama_3007	0.35	-0.4
3,579,411	-		Sama_3007	0.35	-0.7
3,579,411	-		Sama_3007	0.35	+0.5
3,579,456	+		Sama_3007	0.39	+0.3
3,579,457	-		Sama_3007	0.39	-0.0
3,579,475	-		Sama_3007	0.40	+0.9
3,579,475	-		Sama_3007	0.40	+0.9
3,579,508	+		Sama_3007	0.43	+0.2
3,579,528	+		Sama_3007	0.44	+1.4
3,579,529	-		Sama_3007	0.44	+1.3
3,579,529	-		Sama_3007	0.44	+0.7
3,579,599	+		Sama_3007	0.49	-0.7
3,579,599	+		Sama_3007	0.49	+0.2
3,579,599	+		Sama_3007	0.49	+1.7
3,579,599	+		Sama_3007	0.49	+0.9
3,579,599	+		Sama_3007	0.49	-0.4
3,579,600	-		Sama_3007	0.49	+0.2
3,579,600	-		Sama_3007	0.49	+0.5
3,579,600	-		Sama_3007	0.49	+0.3
3,579,600	-		Sama_3007	0.49	+1.1
3,579,609	+		Sama_3007	0.50	+0.6
3,579,609	+		Sama_3007	0.50	+2.0
3,579,610	-		Sama_3007	0.50	+0.6
3,579,617	+		Sama_3007	0.51	+0.1
3,579,618	-		Sama_3007	0.51	-2.6
3,579,658	+		Sama_3007	0.54	-1.1
3,579,659	-		Sama_3007	0.54	+0.8
3,579,663	+		Sama_3007	0.54	-0.8
3,579,663	+		Sama_3007	0.54	+1.5
3,579,663	+		Sama_3007	0.54	-0.2
3,579,663	+		Sama_3007	0.54	+1.7
3,579,664	-		Sama_3007	0.54	+0.8
3,579,664	-		Sama_3007	0.54	-1.5
3,579,664	-		Sama_3007	0.54	-0.0
3,579,820	+		Sama_3007	0.66	+0.9
3,579,821	-		Sama_3007	0.66	-0.4
3,579,821	-		Sama_3007	0.66	+0.9
3,579,821	-		Sama_3007	0.66	-0.4
3,579,821	-		Sama_3007	0.66	+1.2
3,579,904	+		Sama_3007	0.72	-0.4
3,579,905	-		Sama_3007	0.72	+1.4
3,580,003	+		Sama_3007	0.80	-1.2
3,580,003	+		Sama_3007	0.80	+0.7
3,580,003	+		Sama_3007	0.80	+0.3
3,580,003	+		Sama_3007	0.80	+0.7
3,580,003	+		Sama_3007	0.80	-1.3
3,580,004	-		Sama_3007	0.80	+0.3
3,580,048	+		Sama_3007	0.83	+1.2
3,580,056	+		Sama_3007	0.83	+0.5
3,580,056	+		Sama_3007	0.83	-1.0
3,580,114	+		Sama_3007	0.88	+1.0
3,580,114	+		Sama_3007	0.88	+0.6
3,580,114	+		Sama_3007	0.88	+0.4
3,580,115	-		Sama_3007	0.88	+0.1
3,580,115	-		Sama_3007	0.88	+0.8
3,580,196	+				+1.7
3,580,197	-				-1.1
3,580,252	+				+0.5
3,580,252	+				-0.4
3,580,254	+				-1.4
3,580,255	-				-0.0
3,580,336	+				-0.2
3,580,337	-				-1.2
3,580,337	-				+1.2
3,580,337	-				-0.4
3,580,337	-				-0.4
3,580,337	-				+0.8
3,580,367	+				-2.4
3,580,367	+				+0.7
3,580,367	+				-1.2
3,580,368	-				+0.9
3,580,411	+				-0.0
3,580,411	+				-0.6
3,580,411	+				-1.7
3,580,412	-				+1.6
3,580,412	-				+1.2
3,580,412	-				+0.6
3,580,412	-				-0.3
3,580,412	-				-0.1
3,580,412	-				-0.2
3,580,453	+		Sama_3008	0.13	+0.8
3,580,482	-		Sama_3008	0.16	-0.2
3,580,482	-		Sama_3008	0.16	-0.0
3,580,502	+		Sama_3008	0.19	-0.6
3,580,503	-		Sama_3008	0.19	+1.4
3,580,579	-		Sama_3008	0.28	-0.3
3,580,579	-		Sama_3008	0.28	+0.9
3,580,595	+		Sama_3008	0.30	-0.8
3,580,596	-		Sama_3008	0.30	-0.1
3,580,596	-		Sama_3008	0.30	-1.4
3,580,596	-		Sama_3008	0.30	-1.1
3,580,619	+		Sama_3008	0.33	-1.2
3,580,620	-		Sama_3008	0.33	-0.6
3,580,620	-		Sama_3008	0.33	+1.1
3,580,656	-		Sama_3008	0.38	-1.0
3,580,700	-		Sama_3008	0.43	-1.0
3,580,726	+		Sama_3008	0.47	+0.1
3,580,727	-		Sama_3008	0.47	-1.0
3,580,727	-		Sama_3008	0.47	+0.1
3,580,727	-		Sama_3008	0.47	+0.5
3,580,727	-		Sama_3008	0.47	-0.4
3,580,727	-		Sama_3008	0.47	+0.0
3,580,762	+		Sama_3008	0.51	-0.6
3,580,763	-		Sama_3008	0.51	+1.2
3,580,821	+		Sama_3008	0.59	-2.8
3,580,821	+		Sama_3008	0.59	+0.0
3,580,821	+		Sama_3008	0.59	+0.5
3,580,821	+		Sama_3008	0.59	-1.6
3,580,822	-		Sama_3008	0.59	-0.3
3,580,957	+		Sama_3008	0.76	+0.5
3,580,957	+		Sama_3008	0.76	+0.3
3,580,957	+		Sama_3008	0.76	-0.4
3,580,958	-		Sama_3008	0.76	+0.9
3,580,958	-		Sama_3008	0.76	-1.7
3,581,019	-		Sama_3008	0.83	-0.1
3,581,030	+		Sama_3008	0.85	-1.7
3,581,102	+				+0.7
3,581,104	+				-0.6
3,581,104	+				+0.9
3,581,104	+				+0.7
3,581,104	+				-0.8
3,581,104	+				-0.3
3,581,104	+				-1.4
3,581,105	-				-0.1
3,581,105	-				+0.5
3,581,105	-				+0.0
3,581,105	-				-0.3
3,581,105	-				+0.4
3,581,136	+				+0.4
3,581,137	-				+0.9
3,581,137	-				-0.5
3,581,137	-				-0.7
3,581,137	-				+0.7
3,581,152	+				-0.6
3,581,152	+				-0.7
3,581,152	+				-0.1
3,581,152	+				+1.9
3,581,152	+				-2.9
3,581,152	+				+0.6
3,581,153	-				+1.4
3,581,153	-				+0.4
3,581,153	-				-0.7
3,581,153	-				-1.2
3,581,153	-				-0.3
3,581,153	-				-1.7
3,581,153	-				-0.5
3,581,162	-				-1.3
3,581,162	-				-0.0
3,581,167	+				+0.2
3,581,168	-				-1.2
3,581,223	+				+0.7
3,581,223	+				+0.2
3,581,223	+				-0.3
3,581,244	+				+0.3
3,581,244	+				-0.6
3,581,244	+				-0.1
3,581,245	-				+0.5
3,581,374	+				+0.4
3,581,375	-				+1.2
3,581,375	-				-0.6
3,581,375	-				+0.3
3,581,375	-				-0.6
3,581,386	+				+0.2
3,581,387	-				+0.6
3,581,387	-				-0.5
3,581,506	+	astD	Sama_3009	0.14	-0.2
3,581,512	+	astD	Sama_3009	0.15	-1.7
3,581,512	+	astD	Sama_3009	0.15	-0.6
3,581,513	-	astD	Sama_3009	0.15	-0.6
3,581,513	-	astD	Sama_3009	0.15	+1.6
3,581,523	-	astD	Sama_3009	0.16	-0.7
3,581,523	-	astD	Sama_3009	0.16	-1.4
3,581,599	+	astD	Sama_3009	0.21	-1.1
3,581,599	+	astD	Sama_3009	0.21	-2.0
3,581,600	-	astD	Sama_3009	0.21	+0.4
3,581,629	+	astD	Sama_3009	0.23	-1.6
3,581,629	+	astD	Sama_3009	0.23	+0.5
3,581,630	-	astD	Sama_3009	0.23	-0.7
3,581,630	-	astD	Sama_3009	0.23	+0.6
3,581,652	+	astD	Sama_3009	0.24	-1.2
3,581,653	-	astD	Sama_3009	0.25	+0.9
3,581,653	-	astD	Sama_3009	0.25	+1.0
3,581,653	-	astD	Sama_3009	0.25	-0.4
3,581,653	-	astD	Sama_3009	0.25	-1.0
3,581,750	+	astD	Sama_3009	0.31	-1.6
3,581,750	+	astD	Sama_3009	0.31	+0.3
3,581,751	-	astD	Sama_3009	0.31	-0.6
3,581,804	+	astD	Sama_3009	0.35	-1.5
3,581,805	-	astD	Sama_3009	0.35	+0.9
3,581,835	+	astD	Sama_3009	0.37	+0.4
3,581,835	+	astD	Sama_3009	0.37	+0.4
3,581,836	-	astD	Sama_3009	0.37	+0.7
3,581,836	-	astD	Sama_3009	0.37	+0.3
3,581,905	+	astD	Sama_3009	0.42	+0.4
3,581,905	+	astD	Sama_3009	0.42	+0.2
3,581,906	-	astD	Sama_3009	0.42	-0.4
3,581,906	-	astD	Sama_3009	0.42	-0.1
3,581,906	-	astD	Sama_3009	0.42	+1.9
3,581,906	-	astD	Sama_3009	0.42	+0.3
3,581,924	+	astD	Sama_3009	0.43	+1.3
3,581,924	+	astD	Sama_3009	0.43	-0.7
3,581,925	-	astD	Sama_3009	0.43	+0.0
3,581,925	-	astD	Sama_3009	0.43	+0.3
3,581,925	-	astD	Sama_3009	0.43	-0.5
3,581,945	+	astD	Sama_3009	0.44	+4.4
3,581,946	-	astD	Sama_3009	0.45	+0.2
3,581,946	-	astD	Sama_3009	0.45	-1.5
3,581,946	-	astD	Sama_3009	0.45	-0.0
3,581,946	-	astD	Sama_3009	0.45	-1.8
3,582,017	+	astD	Sama_3009	0.49	+1.4
3,582,061	+	astD	Sama_3009	0.52	-0.5
3,582,061	+	astD	Sama_3009	0.52	-0.6
3,582,061	+	astD	Sama_3009	0.52	-1.0
3,582,062	-	astD	Sama_3009	0.52	+0.6