Strain Fitness in Shewanella amazonensis SB2B around Sama_2851

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,389,085	+		Sama_2849	0.64	+0.4
3,389,092	-		Sama_2849	0.65	-1.2
3,389,092	-		Sama_2849	0.65	-0.6
3,389,092	-		Sama_2849	0.65	-0.6
3,389,092	-		Sama_2849	0.65	+0.1
3,389,119	+		Sama_2849	0.68	+1.2
3,389,120	-		Sama_2849	0.68	+0.2
3,389,120	-		Sama_2849	0.68	+1.4
3,389,256	+		Sama_2849	0.83	-0.0
3,389,257	-		Sama_2849	0.84	-0.8
3,389,410	-				-0.1
3,389,445	+				-0.0
3,389,447	+				-0.5
3,389,448	-				+0.8
3,389,470	+				+0.5
3,389,471	-				-0.3
3,389,474	+				-2.5
3,389,474	+				-0.4
3,389,474	+				+0.2
3,389,474	+				-2.4
3,389,487	-				+0.7
3,389,501	+				-0.6
3,389,501	+				+0.4
3,389,532	+				-1.5
3,389,532	+				+0.8
3,389,532	+				+1.1
3,389,533	-				-0.9
3,389,533	-				-0.6
3,389,533	-				-0.6
3,389,547	+		Sama_2850	0.10	+0.2
3,389,548	-		Sama_2850	0.10	+0.9
3,389,733	+		Sama_2850	0.61	+1.6
3,389,825	+		Sama_2850	0.87	+0.4
3,389,825	+		Sama_2850	0.87	-0.6
3,389,825	+		Sama_2850	0.87	-2.2
3,389,825	+		Sama_2850	0.87	+0.3
3,389,825	+		Sama_2850	0.87	+1.7
3,389,825	+		Sama_2850	0.87	+0.3
3,389,825	+		Sama_2850	0.87	-1.4
3,389,825	+		Sama_2850	0.87	+1.3
3,389,825	+		Sama_2850	0.87	+0.6
3,389,825	+		Sama_2850	0.87	-0.5
3,389,825	+		Sama_2850	0.87	-0.3
3,389,826	-		Sama_2850	0.87	-2.3
3,389,826	-		Sama_2850	0.87	+0.2
3,389,826	-		Sama_2850	0.87	-1.0
3,389,826	-		Sama_2850	0.87	-0.7
3,389,826	-		Sama_2850	0.87	+1.0
3,389,826	-		Sama_2850	0.87	+2.0
3,389,826	-		Sama_2850	0.87	-1.6
3,389,827	+		Sama_2850	0.87	-1.4
3,389,827	+		Sama_2850	0.87	+0.5
3,389,827	+		Sama_2850	0.87	-0.4
3,389,827	+		Sama_2850	0.87	+1.2
3,389,827	+		Sama_2850	0.87	+0.1
3,389,827	+		Sama_2850	0.87	-0.9
3,389,827	+		Sama_2850	0.87	-1.4
3,389,827	+		Sama_2850	0.87	-1.1
3,389,827	+		Sama_2850	0.87	-1.2
3,389,827	+		Sama_2850	0.87	+0.6
3,389,827	+		Sama_2850	0.87	+0.0
3,389,827	+		Sama_2850	0.87	-1.6
3,389,827	+		Sama_2850	0.87	+1.3
3,389,828	-		Sama_2850	0.88	-1.3
3,389,828	-		Sama_2850	0.88	+0.4
3,389,828	-		Sama_2850	0.88	-1.6
3,389,828	-		Sama_2850	0.88	-1.4
3,389,861	+				-0.4
3,389,862	-				+0.2
3,389,936	-				+0.4
3,389,936	-				+0.7
3,389,936	-				+0.6
3,389,988	-				-0.6
3,389,988	-				+1.3
3,390,029	+				+1.1
3,390,030	-				+0.6
3,390,039	+				-1.0
3,390,039	+				-0.0
3,390,039	+				-0.9
3,390,039	+				+1.6
3,390,039	+				-0.8
3,390,039	+				+0.6
3,390,040	-				+0.7
3,390,040	-				+2.0
3,390,044	+				-0.3
3,390,055	-				+0.2
3,390,083	+				+0.4
3,390,083	+				+0.6
3,390,083	+				+1.3
3,390,083	+				+2.3
3,390,083	+				+2.6
3,390,083	+				+0.5
3,390,083	+				-0.1
3,390,084	-				+1.7
3,390,140	+				+1.9
3,390,140	+				+0.2
3,390,141	-				+2.6
3,390,216	+				-0.4
3,390,216	+				+0.8
3,390,216	+				+1.8
3,390,217	-				+0.7
3,390,219	+				+1.1
3,390,220	-				+0.9
3,390,246	+		Sama_2851	0.11	+0.5
3,390,247	-		Sama_2851	0.11	+0.6
3,390,281	+		Sama_2851	0.13	+0.2
3,390,308	+		Sama_2851	0.15	+1.2
3,390,309	-		Sama_2851	0.15	+1.4
3,390,309	-		Sama_2851	0.15	+1.9
3,390,350	+		Sama_2851	0.17	+1.0
3,390,359	+		Sama_2851	0.18	+2.1
3,390,360	-		Sama_2851	0.18	+0.1
3,390,378	+		Sama_2851	0.19	+0.4
3,390,378	+		Sama_2851	0.19	+0.7
3,390,411	-		Sama_2851	0.21	+1.2
3,390,411	-		Sama_2851	0.21	+1.1
3,390,431	+		Sama_2851	0.23	-0.2
3,390,431	+		Sama_2851	0.23	+1.9
3,390,432	-		Sama_2851	0.23	-0.8
3,390,432	-		Sama_2851	0.23	+1.5
3,390,555	+		Sama_2851	0.31	+0.7
3,390,590	+		Sama_2851	0.33	+0.8
3,390,627	-		Sama_2851	0.35	+0.2
3,390,627	-		Sama_2851	0.35	-2.1
3,390,627	-		Sama_2851	0.35	-1.2
3,390,674	+		Sama_2851	0.38	+1.2
3,390,701	+		Sama_2851	0.40	+4.0
3,390,702	-		Sama_2851	0.40	-0.9
3,390,702	-		Sama_2851	0.40	+0.6
3,390,705	+		Sama_2851	0.40	+0.6
3,390,705	+		Sama_2851	0.40	-0.5
3,390,706	-		Sama_2851	0.40	+1.0
3,390,706	-		Sama_2851	0.40	+0.1
3,390,706	-		Sama_2851	0.40	+1.6
3,390,706	-		Sama_2851	0.40	+2.1
3,390,706	-		Sama_2851	0.40	+1.1
3,390,825	+		Sama_2851	0.48	+0.5
3,390,825	+		Sama_2851	0.48	+1.3
3,390,826	-		Sama_2851	0.48	+0.3
3,390,828	+		Sama_2851	0.48	-0.4
3,390,828	+		Sama_2851	0.48	+0.7
3,390,828	+		Sama_2851	0.48	+0.7
3,390,828	+		Sama_2851	0.48	+2.7
3,390,828	+		Sama_2851	0.48	-1.0
3,390,828	+		Sama_2851	0.48	+1.7
3,390,828	+		Sama_2851	0.48	+1.9
3,390,828	+		Sama_2851	0.48	+0.6
3,390,828	+		Sama_2851	0.48	+0.7
3,390,829	-		Sama_2851	0.48	+1.6
3,390,829	-		Sama_2851	0.48	-0.4
3,390,829	-		Sama_2851	0.48	-0.8
3,390,829	-		Sama_2851	0.48	+3.0
3,390,829	-		Sama_2851	0.48	+0.8
3,390,829	-		Sama_2851	0.48	+0.1
3,390,829	-		Sama_2851	0.48	+0.8
3,390,829	-		Sama_2851	0.48	-1.3
3,390,829	-		Sama_2851	0.48	-0.9
3,390,839	-		Sama_2851	0.49	+0.7
3,390,912	-		Sama_2851	0.54	+0.6
3,390,989	+		Sama_2851	0.59	-0.2
3,391,047	-		Sama_2851	0.63	+0.9
3,391,047	-		Sama_2851	0.63	+1.7
3,391,170	+		Sama_2851	0.71	+1.0
3,391,170	+		Sama_2851	0.71	+1.0
3,391,170	+		Sama_2851	0.71	+1.1
3,391,170	+		Sama_2851	0.71	-0.3
3,391,170	+		Sama_2851	0.71	+1.2
3,391,170	+		Sama_2851	0.71	+1.9
3,391,171	-		Sama_2851	0.71	+1.6
3,391,171	-		Sama_2851	0.71	+0.1
3,391,171	-		Sama_2851	0.71	+1.4
3,391,171	-		Sama_2851	0.71	+1.6
3,391,171	-		Sama_2851	0.71	+0.3
3,391,171	-		Sama_2851	0.71	-0.0
3,391,171	-		Sama_2851	0.71	+0.8
3,391,172	+		Sama_2851	0.71	+0.9
3,391,172	+		Sama_2851	0.71	+0.6
3,391,172	+		Sama_2851	0.71	+0.9
3,391,172	+		Sama_2851	0.71	-0.6
3,391,172	+		Sama_2851	0.71	+0.3
3,391,172	+		Sama_2851	0.71	+0.3
3,391,172	+		Sama_2851	0.71	+0.9
3,391,172	+		Sama_2851	0.71	+0.2
3,391,172	+		Sama_2851	0.71	+0.8
3,391,172	+		Sama_2851	0.71	+0.7
3,391,172	+		Sama_2851	0.71	+1.6
3,391,172	+		Sama_2851	0.71	+2.2
3,391,172	+		Sama_2851	0.71	-0.7
3,391,173	-		Sama_2851	0.71	+0.7
3,391,173	-		Sama_2851	0.71	+1.7
3,391,173	-		Sama_2851	0.71	+1.6
3,391,173	-		Sama_2851	0.71	+2.4
3,391,173	-		Sama_2851	0.71	-0.5
3,391,173	-		Sama_2851	0.71	+1.4
3,391,173	-		Sama_2851	0.71	+1.6
3,391,173	-		Sama_2851	0.71	+0.1
3,391,173	-		Sama_2851	0.71	-1.5
3,391,173	-		Sama_2851	0.71	-1.0
3,391,174	+		Sama_2851	0.71	+1.6
3,391,174	+		Sama_2851	0.71	+0.7
3,391,174	+		Sama_2851	0.71	+2.5
3,391,174	+		Sama_2851	0.71	+0.4
3,391,174	+		Sama_2851	0.71	-0.3
3,391,174	+		Sama_2851	0.71	+1.6
3,391,174	+		Sama_2851	0.71	+2.2
3,391,174	+		Sama_2851	0.71	+1.1
3,391,174	+		Sama_2851	0.71	-0.2
3,391,174	+		Sama_2851	0.71	+2.1
3,391,175	-		Sama_2851	0.71	-0.0
3,391,175	-		Sama_2851	0.71	-0.1
3,391,175	-		Sama_2851	0.71	-0.8
3,391,175	-		Sama_2851	0.71	+0.3
3,391,175	-		Sama_2851	0.71	+1.1
3,391,175	-		Sama_2851	0.71	+0.8
3,391,175	-		Sama_2851	0.71	+1.8
3,391,216	+		Sama_2851	0.74	+1.6
3,391,217	-		Sama_2851	0.74	+0.6
3,391,217	-		Sama_2851	0.74	+1.2
3,391,217	-		Sama_2851	0.74	+1.6
3,391,238	+		Sama_2851	0.75	+2.6
3,391,239	-		Sama_2851	0.75	-1.0
3,391,247	+		Sama_2851	0.76	+1.3
3,391,275	+		Sama_2851	0.77	+0.4
3,391,275	+		Sama_2851	0.77	-1.0
3,391,275	+		Sama_2851	0.77	-0.2
3,391,275	+		Sama_2851	0.77	+0.4
3,391,275	+		Sama_2851	0.77	+0.7
3,391,275	+		Sama_2851	0.77	-0.2
3,391,275	+		Sama_2851	0.77	+0.9
3,391,276	-		Sama_2851	0.77	+1.4
3,391,288	+		Sama_2851	0.78	+1.1
3,391,288	+		Sama_2851	0.78	+0.3
3,391,288	+		Sama_2851	0.78	-1.4
3,391,289	-		Sama_2851	0.78	-0.7
3,391,306	+		Sama_2851	0.79	+1.2
3,391,306	+		Sama_2851	0.79	+1.8
3,391,307	-		Sama_2851	0.79	-0.3
3,391,307	-		Sama_2851	0.79	+1.2
3,391,307	-		Sama_2851	0.79	-0.3
3,391,307	-		Sama_2851	0.79	+1.2
3,391,326	+		Sama_2851	0.81	+0.6
3,391,327	-		Sama_2851	0.81	+2.4
3,391,327	-		Sama_2851	0.81	+1.7
3,391,345	-		Sama_2851	0.82	+0.7
3,391,345	-		Sama_2851	0.82	+1.0
3,391,345	-		Sama_2851	0.82	+0.7
3,391,345	-		Sama_2851	0.82	+1.8
3,391,353	+		Sama_2851	0.82	+0.4
3,391,353	+		Sama_2851	0.82	+2.3
3,391,353	+		Sama_2851	0.82	+1.1
3,391,353	+		Sama_2851	0.82	-1.0
3,391,353	+		Sama_2851	0.82	+0.7
3,391,353	+		Sama_2851	0.82	-2.6
3,391,353	+		Sama_2851	0.82	-0.4
3,391,353	+		Sama_2851	0.82	+2.0
3,391,353	+		Sama_2851	0.82	-0.2
3,391,353	+		Sama_2851	0.82	-0.7
3,391,353	+		Sama_2851	0.82	+1.3
3,391,353	+		Sama_2851	0.82	+1.0
3,391,353	+		Sama_2851	0.82	+1.5
3,391,353	+		Sama_2851	0.82	+1.1
3,391,353	+		Sama_2851	0.82	+0.8
3,391,353	+		Sama_2851	0.82	-0.2
3,391,354	-		Sama_2851	0.83	+2.4
3,391,354	-		Sama_2851	0.83	+0.2
3,391,354	-		Sama_2851	0.83	+0.6
3,391,354	-		Sama_2851	0.83	-0.6
3,391,354	-		Sama_2851	0.83	+0.7
3,391,354	-		Sama_2851	0.83	+1.8
3,391,354	-		Sama_2851	0.83	+1.0
3,391,424	+		Sama_2851	0.87	+1.0
3,391,500	+				+1.0
3,391,501	-				-0.4
3,391,501	-				+1.6
3,391,514	+				+0.5
3,391,514	+				-0.8
3,391,530	+				+0.6
3,391,530	+				+0.8
3,391,530	+				+1.3
3,391,530	+				+0.0
3,391,531	-				+1.0
3,391,566	+				+0.9
3,391,568	+				+1.7
3,391,574	+				+0.2
3,391,575	-				+2.0
3,391,578	+				+1.6
3,391,579	-				+0.3
3,391,596	-				+0.1
3,391,596	-				+1.7
3,391,596	-				+2.3
3,391,620	+				+0.6
3,391,635	+				+0.8
3,391,635	+				+0.3
3,391,646	+				+2.1
3,391,649	+				-0.0
3,391,693	+				-1.9
3,391,743	+				+0.1
3,391,743	+				-0.1
3,391,744	-				-0.1
3,391,791	-		Sama_2852	0.15	+0.1
3,391,886	+		Sama_2852	0.29	-1.0
3,391,886	+		Sama_2852	0.29	-0.0
3,391,886	+		Sama_2852	0.29	+0.0
3,391,887	-		Sama_2852	0.29	+1.0
3,391,913	-		Sama_2852	0.33	-2.3
3,391,913	-		Sama_2852	0.33	+0.3
3,391,913	-		Sama_2852	0.33	+0.6
3,391,965	+		Sama_2852	0.41	-1.4
3,391,999	+		Sama_2852	0.46	+0.2
3,391,999	+		Sama_2852	0.46	+1.6
3,391,999	+		Sama_2852	0.46	-0.6
3,392,000	-		Sama_2852	0.46	+1.6
3,392,000	-		Sama_2852	0.46	-0.9
3,392,058	-		Sama_2852	0.54	-0.8
3,392,064	+		Sama_2852	0.55	+1.8
3,392,064	+		Sama_2852	0.55	-0.1
3,392,064	+		Sama_2852	0.55	-0.8
3,392,064	+		Sama_2852	0.55	-1.6
3,392,065	-		Sama_2852	0.56	+1.2
3,392,065	-		Sama_2852	0.56	-1.2
3,392,065	-		Sama_2852	0.56	-0.3
3,392,065	-		Sama_2852	0.56	-0.1
3,392,065	-		Sama_2852	0.56	-1.3
3,392,081	+		Sama_2852	0.58	+0.0
3,392,083	+		Sama_2852	0.58	-0.1
3,392,083	+		Sama_2852	0.58	+0.2
3,392,083	+		Sama_2852	0.58	-1.2
3,392,083	+		Sama_2852	0.58	+0.2
3,392,084	-		Sama_2852	0.58	+0.6
3,392,084	-		Sama_2852	0.58	+0.5
3,392,084	-		Sama_2852	0.58	-1.6
3,392,084	-		Sama_2852	0.58	-0.1
3,392,103	-		Sama_2852	0.61	-0.0
3,392,103	-		Sama_2852	0.61	+1.0
3,392,104	+		Sama_2852	0.61	-0.0
3,392,104	+		Sama_2852	0.61	-0.6
3,392,104	+		Sama_2852	0.61	-0.5
3,392,104	+		Sama_2852	0.61	-0.8
3,392,104	+		Sama_2852	0.61	-1.8
3,392,104	+		Sama_2852	0.61	-1.0
3,392,104	+		Sama_2852	0.61	-0.6
3,392,104	+		Sama_2852	0.61	-1.1
3,392,104	+		Sama_2852	0.61	+0.6
3,392,104	+		Sama_2852	0.61	+0.4
3,392,104	+		Sama_2852	0.61	-0.0
3,392,104	+		Sama_2852	0.61	-0.9
3,392,104	+		Sama_2852	0.61	-1.9
3,392,105	-		Sama_2852	0.61	+0.7
3,392,105	-		Sama_2852	0.61	+0.2
3,392,105	-		Sama_2852	0.61	-0.4
3,392,105	-		Sama_2852	0.61	+0.2
3,392,105	-		Sama_2852	0.61	+0.5
3,392,105	-		Sama_2852	0.61	+0.6
3,392,105	-		Sama_2852	0.61	+0.7
3,392,174	+		Sama_2852	0.72	-0.4
3,392,376	+				-1.3
3,392,376	+				-1.1
3,392,413	+				-2.0
3,392,413	+				+1.0
3,392,414	-				-1.4
3,392,456	+				-1.4
3,392,456	+				+0.0
3,392,456	+				+1.8
3,392,457	-				-0.0
3,392,457	-				+0.2
3,392,457	-				-0.0
3,392,457	-				+1.6
3,392,469	+				-0.3
3,392,469	+				+0.2
3,392,483	-				+0.6
3,392,574	+		Sama_2853	0.17	+0.1
3,392,574	+		Sama_2853	0.17	+0.3
3,392,575	-		Sama_2853	0.17	+1.1
3,392,575	-		Sama_2853	0.17	-0.2
3,392,578	-		Sama_2853	0.18	+0.4