Strain Fitness in Shewanella amazonensis SB2B around Sama_2735

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,267,233	+		Sama_2734	0.20	-0.4
3,267,234	-		Sama_2734	0.20	-1.1
3,267,234	-		Sama_2734	0.20	-0.8
3,267,313	+		Sama_2734	0.28	-0.8
3,267,314	-		Sama_2734	0.28	-0.4
3,267,345	+		Sama_2734	0.31	+1.0
3,267,345	+		Sama_2734	0.31	-0.5
3,267,345	+		Sama_2734	0.31	+0.3
3,267,345	+		Sama_2734	0.31	+0.1
3,267,346	-		Sama_2734	0.31	-0.7
3,267,346	-		Sama_2734	0.31	-0.6
3,267,346	-		Sama_2734	0.31	-0.2
3,267,352	+		Sama_2734	0.32	-1.7
3,267,449	-		Sama_2734	0.41	-0.8
3,267,548	+		Sama_2734	0.50	-1.6
3,267,548	+		Sama_2734	0.50	+0.7
3,267,548	+		Sama_2734	0.50	-0.5
3,267,614	+		Sama_2734	0.57	-1.2
3,267,614	+		Sama_2734	0.57	-0.3
3,267,615	-		Sama_2734	0.57	+0.2
3,267,635	+		Sama_2734	0.59	-2.6
3,267,647	+		Sama_2734	0.60	-1.3
3,267,647	+		Sama_2734	0.60	-1.3
3,267,704	+		Sama_2734	0.65	-0.5
3,267,705	-		Sama_2734	0.65	+0.5
3,267,789	+		Sama_2734	0.73	+0.1
3,267,789	+		Sama_2734	0.73	-0.6
3,267,789	+		Sama_2734	0.73	+3.1
3,267,789	+		Sama_2734	0.73	-1.7
3,267,790	-		Sama_2734	0.74	-0.2
3,267,790	-		Sama_2734	0.74	-2.2
3,267,790	-		Sama_2734	0.74	-1.3
3,267,790	-		Sama_2734	0.74	+0.0
3,267,790	-		Sama_2734	0.74	-2.0
3,267,834	+		Sama_2734	0.78	-1.4
3,267,868	+		Sama_2734	0.81	-0.3
3,267,869	-		Sama_2734	0.81	+2.0
3,268,024	+				-0.4
3,268,024	+				-0.5
3,268,025	-				-0.6
3,268,025	-				+1.3
3,268,028	+				+0.8
3,268,028	+				-0.6
3,268,029	-				-1.2
3,268,029	-				+1.8
3,268,052	+				-0.6
3,268,052	+				-0.4
3,268,053	-				-0.7
3,268,055	+				-2.2
3,268,056	-				-2.4
3,268,056	-				+0.2
3,268,056	-				+0.0
3,268,056	-				+1.5
3,268,056	-				+1.2
3,268,121	+				-0.4
3,268,121	+				+0.9
3,268,121	+				-0.1
3,268,121	+				+2.1
3,268,122	-				+2.1
3,268,122	-				-0.6
3,268,122	-				+1.1
3,268,122	-				+0.2
3,268,122	-				+0.9
3,268,123	+				-0.4
3,268,123	+				+1.1
3,268,124	-				-1.1
3,268,124	-				+0.9
3,268,124	-				+0.7
3,268,124	-				-0.9
3,268,124	-				-0.2
3,268,149	+				+0.2
3,268,149	+				+2.1
3,268,149	+				+0.3
3,268,150	-				-0.5
3,268,150	-				-0.5
3,268,150	-				+0.4
3,268,150	-				-2.1
3,268,189	-				-0.9
3,268,189	-				+0.1
3,268,189	-				-0.7
3,268,215	-				+0.1
3,268,318	-		Sama_2735	0.14	-0.1
3,268,318	-		Sama_2735	0.14	-1.0
3,268,318	-		Sama_2735	0.14	+0.7
3,268,358	+		Sama_2735	0.18	-0.5
3,268,359	-		Sama_2735	0.18	-0.8
3,268,359	-		Sama_2735	0.18	-0.1
3,268,380	-		Sama_2735	0.20	-1.0
3,268,409	+		Sama_2735	0.23	+0.5
3,268,409	+		Sama_2735	0.23	-0.0
3,268,410	-		Sama_2735	0.24	-0.7
3,268,410	-		Sama_2735	0.24	-0.1
3,268,410	-		Sama_2735	0.24	-0.7
3,268,410	-		Sama_2735	0.24	-0.6
3,268,410	-		Sama_2735	0.24	+3.5
3,268,410	-		Sama_2735	0.24	+0.7
3,268,424	+		Sama_2735	0.25	+1.5
3,268,437	+		Sama_2735	0.26	+0.6
3,268,437	+		Sama_2735	0.26	+0.7
3,268,438	-		Sama_2735	0.27	+0.3
3,268,438	-		Sama_2735	0.27	-1.2
3,268,545	+		Sama_2735	0.38	+0.7
3,268,546	-		Sama_2735	0.38	-0.6
3,268,564	+		Sama_2735	0.40	-2.5
3,268,573	-		Sama_2735	0.41	+0.0
3,268,619	+		Sama_2735	0.46	-1.5
3,268,620	-		Sama_2735	0.46	-0.8
3,268,682	-		Sama_2735	0.53	+0.6
3,268,689	+		Sama_2735	0.54	-0.8
3,268,911	+		Sama_2735	0.77	+0.6
3,268,911	+		Sama_2735	0.77	-0.3
3,268,916	+		Sama_2735	0.78	-0.4
3,268,956	+		Sama_2735	0.82	+1.7
3,269,048	+				-0.7
3,269,048	+				-0.1
3,269,049	-				+0.0
3,269,049	-				-1.8
3,269,084	+				+1.0
3,269,085	-				-0.1
3,269,085	-				+0.6
3,269,094	+				+1.5
3,269,094	+				-0.8
3,269,094	+				-0.1
3,269,120	+				+0.5
3,269,164	-				-2.9
3,269,213	+				-1.0
3,269,214	-				-0.0
3,269,273	+				-1.3
3,269,274	-				-0.1
3,269,275	+				+2.8
3,269,275	+				-1.8
3,269,275	+				+0.5
3,269,275	+				-0.3
3,269,275	+				-0.7
3,269,275	+				-1.1
3,269,275	+				+0.9
3,269,275	+				-0.7
3,269,276	-				+0.7
3,269,278	+				-0.0
3,269,981	+				+0.1
3,269,981	+				-0.5
3,269,982	-				+0.9
3,269,986	+				-0.2
3,269,986	+				+1.5
3,269,987	-				-0.9