Strain Fitness in Shewanella amazonensis SB2B around Sama_2621

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
3,137,614	+		Sama_2619	0.82	-1.7
3,137,615	-		Sama_2619	0.82	-0.4
3,137,615	-		Sama_2619	0.82	+1.2
3,137,630	+		Sama_2619	0.83	-1.3
3,137,630	+		Sama_2619	0.83	-0.9
3,137,631	-		Sama_2619	0.84	+0.3
3,137,631	-		Sama_2619	0.84	-0.9
3,137,631	-		Sama_2619	0.84	-0.9
3,137,631	-		Sama_2619	0.84	-2.3
3,137,633	+		Sama_2619	0.84	-2.6
3,137,634	-		Sama_2619	0.84	+0.0
3,137,745	-				-0.5
3,137,801	+				-0.3
3,137,801	+				+0.2
3,137,801	+				-0.3
3,137,801	+				-1.9
3,137,802	-				+0.5
3,137,802	-				-0.9
3,137,802	-				-0.9
3,137,805	+				-1.4
3,137,805	+				+0.3
3,137,805	+				+0.8
3,137,805	+				+0.6
3,137,805	+				-0.8
3,137,806	-				+1.0
3,137,806	-				-1.2
3,137,806	-				-1.4
3,137,806	-				-1.1
3,137,806	-				+0.3
3,137,807	+				-3.3
3,137,807	+				-0.9
3,137,807	+				+1.2
3,137,807	+				-0.3
3,137,807	+				-0.3
3,137,807	+				+0.2
3,137,807	+				-1.2
3,137,807	+				-0.6
3,137,808	-				-1.5
3,137,808	-				-0.4
3,137,808	-				-2.2
3,137,808	-				-1.0
3,137,808	-				-0.2
3,137,828	-				+0.3
3,137,861	+				+0.3
3,137,862	-				-0.3
3,137,978	-		Sama_2620	0.29	+0.1
3,138,101	+		Sama_2620	0.56	-1.3
3,138,101	+		Sama_2620	0.56	+0.5
3,138,102	-		Sama_2620	0.56	+0.7
3,138,109	+		Sama_2620	0.57	-1.2
3,138,166	+		Sama_2620	0.69	+1.0
3,138,318	+				-1.2
3,138,318	+				-0.9
3,138,318	+				-0.6
3,138,318	+				+0.5
3,138,318	+				-0.9
3,138,319	-				-1.2
3,138,319	-				-0.6
3,138,637	-				+0.9
3,138,740	-				-0.4
3,138,829	-		Sama_2621	0.13	-1.4
3,138,912	+		Sama_2621	0.18	-2.4
3,138,981	-		Sama_2621	0.22	-1.6
3,139,023	-		Sama_2621	0.24	-1.4
3,139,138	-		Sama_2621	0.31	+0.1
3,139,167	+		Sama_2621	0.33	-2.0
3,139,170	-		Sama_2621	0.33	-2.0
3,139,178	+		Sama_2621	0.34	-0.3
3,139,230	+		Sama_2621	0.37	-1.4
3,139,270	-		Sama_2621	0.39	-0.2
3,139,380	+		Sama_2621	0.45	-2.3
3,139,392	+		Sama_2621	0.46	-1.6
3,139,529	+		Sama_2621	0.54	-0.6
3,139,640	+		Sama_2621	0.61	-1.9
3,139,689	-		Sama_2621	0.64	-2.5
3,139,756	+		Sama_2621	0.68	-0.9
3,139,756	+		Sama_2621	0.68	-2.8
3,139,757	-		Sama_2621	0.68	-0.2
3,139,890	-		Sama_2621	0.76	-1.2
3,139,891	+		Sama_2621	0.76	-0.9
3,139,891	+		Sama_2621	0.76	-1.4
3,139,891	+		Sama_2621	0.76	-0.9
3,139,995	+		Sama_2621	0.82	-1.6
3,139,996	-		Sama_2621	0.82	-1.9
3,140,155	+				-2.5
3,140,317	-				-0.9
3,140,337	+				-0.3
3,140,337	+				+0.2
3,140,354	-				+0.4
3,140,354	-				+0.3
3,140,354	-				-0.8
3,140,397	+				-0.1
3,140,397	+				+0.1
3,140,397	+				-2.4
3,140,397	+				+0.4
3,140,397	+				-0.6
3,140,398	-				-0.1
3,140,398	-				-0.5
3,140,398	-				-0.1
3,140,398	-				-1.0
3,140,472	+		Sama_2622	0.24	-0.2
3,140,472	+		Sama_2622	0.24	-0.4
3,140,473	-		Sama_2622	0.25	-1.6
3,140,473	-		Sama_2622	0.25	-1.4
3,140,473	-		Sama_2622	0.25	+0.0
3,140,473	-		Sama_2622	0.25	-1.3
3,140,484	+		Sama_2622	0.27	-0.3
3,140,484	+		Sama_2622	0.27	-0.4
3,140,484	+		Sama_2622	0.27	-0.9
3,140,484	+		Sama_2622	0.27	+1.6
3,140,484	+		Sama_2622	0.27	+0.1
3,140,484	+		Sama_2622	0.27	+0.3
3,140,484	+		Sama_2622	0.27	-0.5
3,140,485	-		Sama_2622	0.27	-1.4
3,140,485	-		Sama_2622	0.27	-1.2
3,140,530	+		Sama_2622	0.38	-2.6
3,140,531	-		Sama_2622	0.38	-2.0
3,140,531	-		Sama_2622	0.38	+0.6
3,140,574	+		Sama_2622	0.48	+0.5
3,140,575	-		Sama_2622	0.48	+1.4
3,140,575	-		Sama_2622	0.48	-2.2
3,140,604	-		Sama_2622	0.55	+0.7
3,140,604	-		Sama_2622	0.55	-1.7
3,140,645	-		Sama_2622	0.64	+0.5
3,140,698	+		Sama_2622	0.76	-1.6
3,140,698	+		Sama_2622	0.76	-0.8
3,140,698	+		Sama_2622	0.76	+0.2
3,140,699	-		Sama_2622	0.77	-0.5
3,140,732	-		Sama_2622	0.84	-0.6
3,140,804	-				-0.7
3,140,804	-				-0.7
3,140,831	+				-0.8
3,140,856	+				-2.3
3,140,856	+				-2.3
3,140,856	+				+0.8
3,140,857	-				-1.2
3,140,857	-				+1.1
3,140,857	-				-0.3
3,140,857	-				-1.5
3,140,857	-				+0.3
3,140,857	-				+1.0
3,140,870	+				-0.2
3,140,871	-				-1.3
3,140,886	+				-3.2
3,140,886	+				-0.4
3,140,887	-				+0.1
3,140,887	-				-2.5
3,140,887	-				-0.8
3,140,888	+				+0.5
3,140,889	-				-0.6
3,140,889	-				-0.6
3,140,889	-				-0.5
3,140,889	-				+0.3
3,140,962	-				-1.4
3,140,988	+				-0.2
3,140,988	+				+1.4
3,140,988	+				-1.7
3,140,988	+				-0.4
3,140,989	-				+0.7
3,140,989	-				-1.2
3,140,989	-				-1.1
3,140,989	-				+0.2
3,140,995	-				+0.4
3,141,087	+				+0.3
3,141,087	+				+1.0
3,141,087	+				-1.2
3,141,087	+				-0.7
3,141,087	+				-0.7
3,141,088	-				-0.1
3,141,134	+				-1.7
3,141,135	-				-0.2
3,141,135	-				+0.4
3,141,217	-				+0.2
3,141,232	-		Sama_2623	0.10	-1.2
3,141,232	-		Sama_2623	0.10	+0.1