Strain Fitness in Shewanella amazonensis SB2B around Sama_2487

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,989,083	+		Sama_2486	0.14	-0.2
2,989,083	+		Sama_2486	0.14	+1.1
2,989,083	+		Sama_2486	0.14	+1.2
2,989,084	-		Sama_2486	0.14	+1.2
2,989,196	+		Sama_2486	0.28	+0.4
2,989,196	+		Sama_2486	0.28	-1.4
2,989,233	-		Sama_2486	0.32	-0.0
2,989,233	-		Sama_2486	0.32	-0.9
2,989,233	-		Sama_2486	0.32	-2.6
2,989,310	+		Sama_2486	0.42	+0.4
2,989,333	+		Sama_2486	0.44	-0.2
2,989,333	+		Sama_2486	0.44	-0.3
2,989,333	+		Sama_2486	0.44	-0.9
2,989,333	+		Sama_2486	0.44	-1.8
2,989,333	+		Sama_2486	0.44	+0.6
2,989,334	-		Sama_2486	0.45	-0.2
2,989,334	-		Sama_2486	0.45	+0.1
2,989,334	-		Sama_2486	0.45	-0.3
2,989,334	-		Sama_2486	0.45	+0.8
2,989,334	-		Sama_2486	0.45	-0.9
2,989,336	+		Sama_2486	0.45	+1.9
2,989,336	+		Sama_2486	0.45	+0.4
2,989,336	+		Sama_2486	0.45	-1.9
2,989,337	-		Sama_2486	0.45	-0.5
2,989,337	-		Sama_2486	0.45	-2.1
2,989,337	-		Sama_2486	0.45	+0.2
2,989,446	-		Sama_2486	0.58	+0.2
2,989,446	-		Sama_2486	0.58	-1.8
2,989,446	-		Sama_2486	0.58	-1.3
2,989,449	+		Sama_2486	0.59	+0.1
2,989,449	+		Sama_2486	0.59	-0.2
2,989,449	+		Sama_2486	0.59	-0.2
2,989,449	+		Sama_2486	0.59	-0.4
2,989,450	-		Sama_2486	0.59	-1.2
2,989,450	-		Sama_2486	0.59	-0.2
2,989,482	+		Sama_2486	0.63	+1.1
2,989,528	+		Sama_2486	0.68	-0.0
2,989,528	+		Sama_2486	0.68	+0.4
2,989,528	+		Sama_2486	0.68	-2.3
2,989,529	-		Sama_2486	0.69	-0.2
2,989,529	-		Sama_2486	0.69	-0.5
2,989,529	-		Sama_2486	0.69	+0.8
2,989,529	-		Sama_2486	0.69	+1.1
2,989,529	-		Sama_2486	0.69	+1.8
2,989,666	+		Sama_2486	0.85	-1.8
2,989,666	+		Sama_2486	0.85	-0.9
2,989,667	-		Sama_2486	0.85	-0.4
2,989,677	-		Sama_2486	0.87	+0.1
2,989,725	+				-0.5
2,989,725	+				-0.5
2,989,725	+				+0.1
2,989,725	+				-0.2
2,989,726	-				+0.2
2,989,726	-				-1.3
2,989,726	-				-0.6
2,989,726	-				-2.3
2,989,726	-				+0.0
2,989,726	-				+0.1
2,989,726	-				+2.1
2,989,755	+				-0.7
2,989,756	-				-0.9
2,989,756	-				-2.6
2,989,791	+				+0.6
2,989,791	+				+0.1
2,989,791	+				-2.3
2,989,792	-				-1.6
2,989,792	-				-0.2
2,989,871	-				+0.3
2,989,880	+				+0.0
2,989,996	-				-1.8
2,990,058	+				-0.0
2,990,059	-				+1.5
2,990,173	+		Sama_2487	0.11	+0.8
2,990,173	+		Sama_2487	0.11	-1.0
2,990,173	+		Sama_2487	0.11	-1.6
2,990,173	+		Sama_2487	0.11	-0.2
2,990,173	+		Sama_2487	0.11	+1.0
2,990,174	-		Sama_2487	0.11	-1.9
2,990,174	-		Sama_2487	0.11	-2.0
2,990,174	-		Sama_2487	0.11	+0.5
2,990,174	-		Sama_2487	0.11	+0.2
2,990,203	-		Sama_2487	0.14	-0.0
2,990,270	+		Sama_2487	0.21	-2.1
2,990,270	+		Sama_2487	0.21	+0.8
2,990,271	-		Sama_2487	0.22	-0.8
2,990,271	-		Sama_2487	0.22	+1.0
2,990,271	-		Sama_2487	0.22	-0.9
2,990,366	+		Sama_2487	0.32	-0.8
2,990,367	-		Sama_2487	0.32	+3.1
2,990,367	-		Sama_2487	0.32	-0.6
2,990,414	+		Sama_2487	0.37	+0.4
2,990,420	-		Sama_2487	0.38	-1.9
2,990,423	+		Sama_2487	0.38	+0.2
2,990,513	+		Sama_2487	0.48	+0.2
2,990,541	-		Sama_2487	0.51	-0.0
2,990,569	-		Sama_2487	0.54	-0.9
2,990,569	-		Sama_2487	0.54	-1.5
2,990,569	-		Sama_2487	0.54	-0.2
2,990,569	-		Sama_2487	0.54	-0.6
2,990,576	-		Sama_2487	0.55	-1.8
2,990,662	-		Sama_2487	0.64	+1.0
2,990,662	-		Sama_2487	0.64	-0.5
2,990,703	+		Sama_2487	0.69	+1.4
2,990,704	-		Sama_2487	0.69	+1.4
2,990,760	-		Sama_2487	0.75	+0.4
2,990,760	-		Sama_2487	0.75	+0.6
2,990,760	-		Sama_2487	0.75	-2.1
2,990,760	-		Sama_2487	0.75	-2.5
2,990,789	-		Sama_2487	0.78	+0.2
2,990,799	+		Sama_2487	0.79	-2.3
2,990,799	+		Sama_2487	0.79	-1.7
2,990,800	-		Sama_2487	0.79	-0.9
2,990,847	+		Sama_2487	0.84	+0.3
2,990,847	+		Sama_2487	0.84	-2.2
2,990,847	+		Sama_2487	0.84	-0.1
2,990,863	+		Sama_2487	0.86	-0.9
2,990,880	+		Sama_2487	0.88	-2.4
2,990,880	+		Sama_2487	0.88	+0.7
2,990,881	-		Sama_2487	0.88	+2.4
2,990,881	-		Sama_2487	0.88	-0.4
2,990,881	-		Sama_2487	0.88	-0.9
2,990,881	-		Sama_2487	0.88	-0.8
2,990,882	+		Sama_2487	0.88	-0.6
2,990,883	-		Sama_2487	0.88	-0.6
2,990,912	+				-0.6
2,990,913	-				-0.4
2,990,913	-				+0.4
2,990,993	+				-2.1
2,990,994	-				+0.7
2,991,012	-				-2.3
2,991,023	-				-3.0
2,991,023	-				-0.1
2,991,023	-				+0.6
2,991,118	-		Sama_2488	0.39	-0.6
2,991,118	-		Sama_2488	0.39	-0.6
2,991,118	-		Sama_2488	0.39	-0.6
2,991,118	-		Sama_2488	0.39	-1.4
2,991,118	-		Sama_2488	0.39	-0.3
2,991,118	-		Sama_2488	0.39	+1.6
2,991,118	-		Sama_2488	0.39	+0.1
2,991,190	-		Sama_2488	0.61	-1.2
2,991,244	+		Sama_2488	0.77	-0.2
2,991,244	+		Sama_2488	0.77	+1.0
2,991,245	-		Sama_2488	0.77	-0.7
2,991,245	-		Sama_2488	0.77	-0.9
2,991,322	+				-1.6
2,991,323	-				-0.2
2,991,323	-				-0.6
2,991,323	-				-1.9
2,991,345	-				+1.4
2,991,345	-				+0.5
2,991,449	+	trmB	Sama_2489	0.14	+1.0
2,991,449	+	trmB	Sama_2489	0.14	+0.7
2,991,450	-	trmB	Sama_2489	0.14	+1.2
2,991,450	-	trmB	Sama_2489	0.14	+3.2
2,991,450	-	trmB	Sama_2489	0.14	+0.4
2,991,450	-	trmB	Sama_2489	0.14	+0.5
2,991,450	-	trmB	Sama_2489	0.14	+0.8
2,991,450	-	trmB	Sama_2489	0.14	+1.3
2,991,460	-	trmB	Sama_2489	0.15	+0.5
2,991,507	+	trmB	Sama_2489	0.22	+2.1
2,991,507	+	trmB	Sama_2489	0.22	+1.5
2,991,508	-	trmB	Sama_2489	0.22	-2.1
2,991,508	-	trmB	Sama_2489	0.22	-1.2
2,991,508	-	trmB	Sama_2489	0.22	+0.8
2,991,541	-	trmB	Sama_2489	0.27	+0.5
2,991,575	-	trmB	Sama_2489	0.32	+1.4
2,991,798	+	trmB	Sama_2489	0.63	+2.0
2,991,798	+	trmB	Sama_2489	0.63	-1.9
2,991,799	-	trmB	Sama_2489	0.63	+0.8
2,991,799	-	trmB	Sama_2489	0.63	+0.4
2,991,799	-	trmB	Sama_2489	0.63	+1.2
2,991,799	-	trmB	Sama_2489	0.63	+0.4
2,991,799	-	trmB	Sama_2489	0.63	+0.5
2,991,799	-	trmB	Sama_2489	0.63	+0.5
2,991,873	+	trmB	Sama_2489	0.73	-1.1
2,991,873	+	trmB	Sama_2489	0.73	+3.4
2,991,874	-	trmB	Sama_2489	0.73	+1.4
2,991,874	-	trmB	Sama_2489	0.73	-0.7
2,991,874	-	trmB	Sama_2489	0.73	+0.9
2,991,874	-	trmB	Sama_2489	0.73	+1.0
2,991,893	-	trmB	Sama_2489	0.76	+0.6
2,991,906	+	trmB	Sama_2489	0.78	+1.0
2,991,923	+	trmB	Sama_2489	0.80	+1.5
2,991,923	+	trmB	Sama_2489	0.80	+0.4
2,991,979	-	trmB	Sama_2489	0.88	+0.8
2,991,979	-	trmB	Sama_2489	0.88	+0.6