Strain Fitness in Shewanella amazonensis SB2B around Sama_2471

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,974,983	-		Sama_2469	0.43	-2.5
2,974,991	+		Sama_2469	0.44	-2.0
2,974,991	+		Sama_2469	0.44	+0.5
2,974,992	-		Sama_2469	0.44	+0.2
2,974,992	-		Sama_2469	0.44	+0.4
2,974,992	-		Sama_2469	0.44	-1.9
2,974,992	-		Sama_2469	0.44	-0.4
2,974,997	+		Sama_2469	0.45	+0.7
2,974,997	+		Sama_2469	0.45	+0.0
2,974,997	+		Sama_2469	0.45	-1.8
2,974,997	+		Sama_2469	0.45	+0.0
2,974,997	+		Sama_2469	0.45	+0.4
2,974,998	-		Sama_2469	0.45	-2.0
2,974,998	-		Sama_2469	0.45	+1.7
2,974,998	-		Sama_2469	0.45	-1.5
2,974,998	-		Sama_2469	0.45	+0.0
2,974,998	-		Sama_2469	0.45	-3.0
2,974,998	-		Sama_2469	0.45	+0.5
2,974,998	-		Sama_2469	0.45	-1.0
2,974,998	-		Sama_2469	0.45	+1.2
2,974,998	-		Sama_2469	0.45	-0.9
2,974,998	-		Sama_2469	0.45	-1.0
2,975,014	-		Sama_2469	0.48	+0.1
2,975,031	+		Sama_2469	0.51	-0.9
2,975,049	-		Sama_2469	0.54	+0.3
2,975,049	-		Sama_2469	0.54	-0.8
2,975,049	-		Sama_2469	0.54	-0.8
2,975,049	-		Sama_2469	0.54	-1.4
2,975,085	+		Sama_2469	0.61	-0.8
2,975,085	+		Sama_2469	0.61	-0.6
2,975,085	+		Sama_2469	0.61	-0.6
2,975,085	+		Sama_2469	0.61	+0.4
2,975,086	-		Sama_2469	0.61	+0.9
2,975,086	-		Sama_2469	0.61	+0.4
2,975,160	-		Sama_2469	0.74	-1.0
2,975,195	+		Sama_2469	0.80	-2.2
2,975,196	-		Sama_2469	0.81	-0.4
2,975,196	-		Sama_2469	0.81	-2.0
2,975,212	-		Sama_2469	0.83	-0.8
2,975,212	-		Sama_2469	0.83	-2.0
2,975,250	+				+0.5
2,975,290	+				+1.9
2,975,290	+				+1.4
2,975,291	-				+0.4
2,975,291	-				+0.7
2,975,291	-				+0.1
2,975,291	-				-1.6
2,975,291	-				+0.8
2,975,291	-				-1.0
2,975,291	-				-0.2
2,975,292	+				-1.0
2,975,349	-				+0.6
2,975,349	-				-0.9
2,975,349	-				-0.6
2,975,349	-				-1.2
2,975,371	-				-0.2
2,975,371	-				+0.0
2,975,371	-				-0.5
2,975,371	-				+0.1
2,975,389	+				-0.8
2,975,390	-				-1.0
2,975,495	+				+0.1
2,975,495	+				-3.3
2,975,496	-				-0.6
2,975,499	+				-1.1
2,975,499	+				-1.6
2,975,500	-				-0.6
2,975,500	-				-1.0
2,975,500	-				-0.8
2,975,534	+		Sama_2470	0.12	-2.0
2,975,535	-		Sama_2470	0.12	-1.6
2,975,619	+		Sama_2470	0.37	+1.2
2,975,619	+		Sama_2470	0.37	-0.1
2,975,641	+		Sama_2470	0.44	-0.8
2,975,641	+		Sama_2470	0.44	-0.8
2,975,641	+		Sama_2470	0.44	+0.8
2,975,641	+		Sama_2470	0.44	-0.8
2,975,666	+		Sama_2470	0.52	-1.0
2,975,666	+		Sama_2470	0.52	+0.8
2,975,667	-		Sama_2470	0.52	-0.2
2,975,696	+		Sama_2470	0.61	-1.2
2,975,697	-		Sama_2470	0.61	-0.2
2,975,697	-		Sama_2470	0.61	-2.4
2,975,732	+		Sama_2470	0.72	-0.1
2,975,733	-		Sama_2470	0.72	+0.9
2,975,737	+		Sama_2470	0.73	+0.0
2,975,737	+		Sama_2470	0.73	+1.6
2,975,737	+		Sama_2470	0.73	-1.0
2,975,737	+		Sama_2470	0.73	+0.4
2,975,747	+		Sama_2470	0.76	-2.8
2,975,765	-		Sama_2470	0.82	-1.2
2,975,765	-		Sama_2470	0.82	-1.6
2,975,816	+				-1.6
2,975,817	-				-1.2
2,975,853	-				-1.3
2,975,886	+				+2.0
2,975,886	+				-1.6
2,975,886	+				+0.3
2,975,886	+				+0.1
2,975,886	+				-2.2
2,975,886	+				-0.1
2,975,886	+				+0.1
2,975,886	+				-0.2
2,975,886	+				+0.9
2,975,886	+				-1.0
2,975,886	+				-0.5
2,975,887	-				-0.6
2,975,887	-				+2.2
2,975,887	-				+1.3
2,975,887	-				-0.8
2,975,887	-				+1.0
2,975,887	-				+1.5
2,975,887	-				-0.1
2,975,887	-				-0.1
2,975,887	-				+0.7
2,975,887	-				+0.9
2,975,887	-				+0.5
2,975,887	-				+0.5
2,975,888	+				-1.0
2,975,888	+				+0.0
2,975,888	+				-0.6
2,975,889	-				-0.5
2,975,889	-				-0.0
2,975,938	+				+0.2
2,975,939	-				-0.9
2,975,958	+				-0.2
2,975,958	+				-2.0
2,975,958	+				-0.6
2,975,958	+				-1.6
2,975,959	-				+0.8
2,975,959	-				+1.4
2,975,959	-				-1.5
2,975,961	+				+0.6
2,975,961	+				+0.1
2,975,961	+				+0.1
2,975,961	+				-1.2
2,975,962	-				-0.1
2,975,962	-				-0.1
2,975,969	+				-0.4
2,975,969	+				-1.1
2,975,970	-				+0.8
2,975,980	+		Sama_2471	0.12	-0.2
2,976,058	+		Sama_2471	0.36	-0.0
2,976,141	+		Sama_2471	0.61	-3.1
2,976,141	+		Sama_2471	0.61	-1.0
2,976,141	+		Sama_2471	0.61	+1.6
2,976,244	+				-0.3
2,976,352	+		Sama_2472	0.14	+2.0
2,976,352	+		Sama_2472	0.14	+0.9
2,976,393	+		Sama_2472	0.21	+3.0
2,976,393	+		Sama_2472	0.21	+0.1
2,976,393	+		Sama_2472	0.21	+1.3
2,976,446	+		Sama_2472	0.31	+2.3
2,976,446	+		Sama_2472	0.31	+2.2
2,976,447	-		Sama_2472	0.31	-0.0
2,976,447	-		Sama_2472	0.31	+0.6
2,976,447	-		Sama_2472	0.31	+1.1
2,976,664	+		Sama_2472	0.69	+1.4
2,976,786	+				+1.4
2,976,786	+				+1.0