Strain Fitness in Shewanella amazonensis SB2B around Sama_2451

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,951,790	+		Sama_2450	0.29	+0.1
2,951,791	-		Sama_2450	0.29	-1.3
2,951,872	+		Sama_2450	0.35	+1.4
2,951,872	+		Sama_2450	0.35	+0.4
2,951,872	+		Sama_2450	0.35	-0.9
2,951,882	-		Sama_2450	0.36	-1.6
2,951,898	+		Sama_2450	0.37	-0.4
2,951,899	-		Sama_2450	0.38	-2.1
2,951,899	-		Sama_2450	0.38	-1.0
2,951,899	-		Sama_2450	0.38	-1.1
2,951,934	+		Sama_2450	0.40	-1.1
2,951,935	-		Sama_2450	0.40	+0.2
2,951,935	-		Sama_2450	0.40	-0.5
2,952,057	+		Sama_2450	0.50	+2.4
2,952,057	+		Sama_2450	0.50	-2.7
2,952,057	+		Sama_2450	0.50	-0.8
2,952,057	+		Sama_2450	0.50	-0.2
2,952,057	+		Sama_2450	0.50	+0.2
2,952,057	+		Sama_2450	0.50	+1.1
2,952,057	+		Sama_2450	0.50	+0.4
2,952,057	+		Sama_2450	0.50	-0.3
2,952,057	+		Sama_2450	0.50	+2.1
2,952,057	+		Sama_2450	0.50	-2.4
2,952,058	-		Sama_2450	0.50	-1.2
2,952,058	-		Sama_2450	0.50	-0.3
2,952,058	-		Sama_2450	0.50	-1.8
2,952,058	-		Sama_2450	0.50	+0.1
2,952,058	-		Sama_2450	0.50	-1.0
2,952,221	-		Sama_2450	0.63	-1.2
2,952,261	+		Sama_2450	0.66	+0.7
2,952,262	-		Sama_2450	0.66	-0.5
2,952,262	-		Sama_2450	0.66	-0.2
2,952,303	+		Sama_2450	0.69	+1.4
2,952,303	+		Sama_2450	0.69	-1.1
2,952,303	+		Sama_2450	0.69	+0.9
2,952,303	+		Sama_2450	0.69	+0.8
2,952,303	+		Sama_2450	0.69	-0.1
2,952,303	+		Sama_2450	0.69	-1.8
2,952,304	-		Sama_2450	0.69	-1.2
2,952,304	-		Sama_2450	0.69	-1.0
2,952,304	-		Sama_2450	0.69	-0.8
2,952,304	-		Sama_2450	0.69	+0.6
2,952,304	-		Sama_2450	0.69	-1.0
2,952,326	-		Sama_2450	0.71	+0.6
2,952,329	-		Sama_2450	0.71	+0.6
2,952,329	-		Sama_2450	0.71	-0.6
2,952,329	-		Sama_2450	0.71	-1.2
2,952,329	-		Sama_2450	0.71	-0.8
2,952,329	-		Sama_2450	0.71	-0.6
2,952,329	-		Sama_2450	0.71	-1.1
2,952,463	+		Sama_2450	0.82	-0.5
2,952,464	-		Sama_2450	0.82	-1.6
2,952,464	-		Sama_2450	0.82	-0.6
2,952,507	-		Sama_2450	0.85	+1.6
2,952,556	+		Sama_2450	0.89	-1.1
2,952,556	+		Sama_2450	0.89	-1.0
2,952,557	-		Sama_2450	0.89	-0.6
2,952,567	+				+0.5
2,952,567	+				-0.1
2,952,642	+				+0.7
2,952,642	+				+0.7
2,952,643	-				+0.5
2,952,692	+				+3.3
2,952,795	-				+0.4
2,952,795	-				+0.0
2,952,801	-				-1.2
2,952,832	+				+0.3
2,952,833	-				-1.4
2,952,865	+				+0.4
2,952,865	+				-2.4
2,952,866	-				-1.4
2,952,866	-				-0.1
2,952,866	-				-1.4
2,953,015	+		Sama_2451	0.12	+0.5
2,953,015	+		Sama_2451	0.12	-0.7
2,953,015	+		Sama_2451	0.12	+1.4
2,953,016	-		Sama_2451	0.12	-0.2
2,953,016	-		Sama_2451	0.12	-1.4
2,953,016	-		Sama_2451	0.12	+0.4
2,953,016	-		Sama_2451	0.12	-0.5
2,953,115	+		Sama_2451	0.16	+0.0
2,953,116	-		Sama_2451	0.16	-2.6
2,953,116	-		Sama_2451	0.16	-0.9
2,953,137	+		Sama_2451	0.17	+1.0
2,953,137	+		Sama_2451	0.17	-1.3
2,953,138	-		Sama_2451	0.17	-0.8
2,953,138	-		Sama_2451	0.17	-0.8
2,953,169	+		Sama_2451	0.18	+0.4
2,953,169	+		Sama_2451	0.18	+1.0
2,953,170	-		Sama_2451	0.18	-0.8
2,953,170	-		Sama_2451	0.18	-0.8
2,953,236	+		Sama_2451	0.21	+0.6
2,953,236	+		Sama_2451	0.21	+0.8
2,953,236	+		Sama_2451	0.21	+1.0
2,953,261	+		Sama_2451	0.22	-0.1
2,953,261	+		Sama_2451	0.22	+1.6
2,953,261	+		Sama_2451	0.22	+0.5
2,953,261	+		Sama_2451	0.22	+1.6
2,953,262	-		Sama_2451	0.22	-1.5
2,953,262	-		Sama_2451	0.22	+0.3
2,953,262	-		Sama_2451	0.22	-0.6
2,953,262	-		Sama_2451	0.22	-1.0
2,953,262	-		Sama_2451	0.22	-1.2
2,953,262	-		Sama_2451	0.22	-1.0
2,953,347	-		Sama_2451	0.25	-0.2
2,953,444	+		Sama_2451	0.29	+0.4
2,953,445	-		Sama_2451	0.29	+3.4
2,953,486	+		Sama_2451	0.31	+0.5
2,953,487	-		Sama_2451	0.31	-0.4
2,953,487	-		Sama_2451	0.31	-1.1
2,953,487	-		Sama_2451	0.31	+0.2
2,953,487	-		Sama_2451	0.31	+2.4
2,953,613	+		Sama_2451	0.36	-0.7
2,953,614	-		Sama_2451	0.36	+0.7
2,953,614	-		Sama_2451	0.36	-0.3
2,953,631	+		Sama_2451	0.37	+1.1
2,953,632	-		Sama_2451	0.37	-0.2
2,953,659	+		Sama_2451	0.38	-1.1
2,953,659	+		Sama_2451	0.38	+0.3
2,953,659	+		Sama_2451	0.38	+1.0
2,953,660	-		Sama_2451	0.38	-2.9
2,953,660	-		Sama_2451	0.38	-0.2
2,953,866	+		Sama_2451	0.46	+1.6
2,953,866	+		Sama_2451	0.46	+1.1
2,953,867	-		Sama_2451	0.46	-0.8
2,953,877	-		Sama_2451	0.47	-0.4
2,953,877	-		Sama_2451	0.47	-0.5
2,953,922	+		Sama_2451	0.49	-0.2
2,953,922	+		Sama_2451	0.49	+0.8
2,953,922	+		Sama_2451	0.49	+1.5
2,953,922	+		Sama_2451	0.49	+0.2
2,953,923	-		Sama_2451	0.49	-0.5
2,953,923	-		Sama_2451	0.49	-0.4
2,953,998	-		Sama_2451	0.52	-0.5
2,953,998	-		Sama_2451	0.52	-0.1
2,954,083	+		Sama_2451	0.55	+0.7
2,954,083	+		Sama_2451	0.55	-0.6
2,954,084	-		Sama_2451	0.55	+0.1
2,954,093	+		Sama_2451	0.56	-0.3
2,954,094	-		Sama_2451	0.56	+1.4
2,954,094	-		Sama_2451	0.56	-2.5
2,954,105	+		Sama_2451	0.56	+0.9
2,954,105	+		Sama_2451	0.56	+0.0
2,954,105	+		Sama_2451	0.56	-0.6
2,954,105	+		Sama_2451	0.56	+0.2
2,954,106	-		Sama_2451	0.56	-0.6
2,954,106	-		Sama_2451	0.56	-1.2
2,954,106	-		Sama_2451	0.56	-1.5
2,954,134	+		Sama_2451	0.57	+0.0
2,954,134	+		Sama_2451	0.57	-0.9
2,954,134	+		Sama_2451	0.57	+1.8
2,954,134	+		Sama_2451	0.57	+0.1
2,954,135	-		Sama_2451	0.57	-1.6
2,954,135	-		Sama_2451	0.57	+0.6
2,954,135	-		Sama_2451	0.57	+0.8
2,954,318	+		Sama_2451	0.65	-1.2
2,954,344	+		Sama_2451	0.66	+1.5
2,954,345	-		Sama_2451	0.66	-0.7
2,954,501	+		Sama_2451	0.72	-1.2
2,954,546	+		Sama_2451	0.74	-1.3
2,954,546	+		Sama_2451	0.74	+0.4
2,954,547	-		Sama_2451	0.74	+0.1
2,954,547	-		Sama_2451	0.74	-1.9
2,954,547	-		Sama_2451	0.74	-1.5
2,954,572	+		Sama_2451	0.75	+0.3
2,954,572	+		Sama_2451	0.75	-0.8
2,954,572	+		Sama_2451	0.75	-0.3
2,954,572	+		Sama_2451	0.75	+0.5
2,954,572	+		Sama_2451	0.75	-0.2
2,954,572	+		Sama_2451	0.75	+0.6
2,954,572	+		Sama_2451	0.75	+0.9
2,954,573	-		Sama_2451	0.75	-1.5
2,954,573	-		Sama_2451	0.75	+0.0
2,954,573	-		Sama_2451	0.75	+0.4
2,954,573	-		Sama_2451	0.75	-0.7
2,954,573	-		Sama_2451	0.75	+0.4
2,954,573	-		Sama_2451	0.75	+1.4
2,954,573	-		Sama_2451	0.75	-1.2
2,954,573	-		Sama_2451	0.75	-2.1
2,954,573	-		Sama_2451	0.75	-1.2
2,954,573	-		Sama_2451	0.75	-0.8
2,954,573	-		Sama_2451	0.75	-1.2
2,954,582	+		Sama_2451	0.75	-1.2
2,954,583	-		Sama_2451	0.75	-0.6
2,954,670	+		Sama_2451	0.79	-0.6
2,954,670	+		Sama_2451	0.79	-1.0
2,954,670	+		Sama_2451	0.79	+1.1
2,954,670	+		Sama_2451	0.79	+0.1
2,954,670	+		Sama_2451	0.79	+0.7
2,954,671	-		Sama_2451	0.79	-2.0
2,954,671	-		Sama_2451	0.79	-1.6
2,954,677	+		Sama_2451	0.79	+0.5
2,954,854	+		Sama_2451	0.86	+0.6
2,954,854	+		Sama_2451	0.86	-0.2
2,954,947	+				-0.9
2,954,947	+				+0.6
2,954,947	+				+1.3
2,954,947	+				-0.3
2,954,947	+				-1.3
2,954,948	-				-1.2
2,954,948	-				-1.1
2,955,082	+				-0.4
2,955,082	+				-0.2
2,955,083	-				-0.3
2,955,083	-				-1.7
2,955,252	+				+1.8
2,955,252	+				+0.4
2,955,253	-				-2.3
2,955,253	-				-0.8
2,955,303	+				+0.5
2,955,304	-				-2.6
2,955,448	-		Sama_2452	0.12	-1.6
2,955,555	+		Sama_2452	0.17	-0.1
2,955,555	+		Sama_2452	0.17	+0.1
2,955,555	+		Sama_2452	0.17	-1.1
2,955,555	+		Sama_2452	0.17	-0.1
2,955,555	+		Sama_2452	0.17	+1.2
2,955,556	-		Sama_2452	0.17	-1.6
2,955,556	-		Sama_2452	0.17	-2.8
2,955,556	-		Sama_2452	0.17	-1.2
2,955,556	-		Sama_2452	0.17	+0.2
2,955,557	+		Sama_2452	0.17	+1.8
2,955,557	+		Sama_2452	0.17	+0.0
2,955,557	+		Sama_2452	0.17	-0.2
2,955,557	+		Sama_2452	0.17	-1.2
2,955,557	+		Sama_2452	0.17	+0.6
2,955,558	-		Sama_2452	0.17	+0.6
2,955,558	-		Sama_2452	0.17	-2.0
2,955,558	-		Sama_2452	0.17	-1.0
2,955,594	+		Sama_2452	0.19	+0.8
2,955,601	-		Sama_2452	0.19	-0.1
2,955,601	-		Sama_2452	0.19	-2.2
2,955,677	+		Sama_2452	0.23	+0.6
2,955,677	+		Sama_2452	0.23	+0.5
2,955,677	+		Sama_2452	0.23	+0.7
2,955,677	+		Sama_2452	0.23	+0.2
2,955,678	-		Sama_2452	0.23	-0.8
2,955,678	-		Sama_2452	0.23	-1.8
2,955,899	+		Sama_2452	0.34	+0.2
2,956,070	+		Sama_2452	0.42	+0.8
2,956,070	+		Sama_2452	0.42	+0.4
2,956,070	+		Sama_2452	0.42	+2.7
2,956,070	+		Sama_2452	0.42	+0.9
2,956,071	-		Sama_2452	0.42	-0.1
2,956,071	-		Sama_2452	0.42	-0.7
2,956,071	-		Sama_2452	0.42	-0.0
2,956,071	-		Sama_2452	0.42	-1.0
2,956,071	-		Sama_2452	0.42	-1.0
2,956,071	-		Sama_2452	0.42	+0.9
2,956,071	-		Sama_2452	0.42	-2.9
2,956,074	+		Sama_2452	0.42	+1.1
2,956,074	+		Sama_2452	0.42	+1.2
2,956,074	+		Sama_2452	0.42	+0.4
2,956,074	+		Sama_2452	0.42	+0.9
2,956,074	+		Sama_2452	0.42	+0.9
2,956,074	+		Sama_2452	0.42	+2.5
2,956,075	-		Sama_2452	0.42	-0.9
2,956,075	-		Sama_2452	0.42	-0.8
2,956,075	-		Sama_2452	0.42	-1.0
2,956,075	-		Sama_2452	0.42	-0.3
2,956,075	-		Sama_2452	0.42	-1.6
2,956,075	-		Sama_2452	0.42	-0.2
2,956,075	-		Sama_2452	0.42	+0.1
2,956,075	-		Sama_2452	0.42	-1.3
2,956,153	-		Sama_2452	0.46	+1.0
2,956,168	-		Sama_2452	0.47	+0.2