Strain Fitness in Shewanella amazonensis SB2B around Sama_2450

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,950,438	+		Sama_2449	0.40	+0.8
2,950,508	+		Sama_2449	0.44	-2.1
2,950,508	+		Sama_2449	0.44	+0.6
2,950,508	+		Sama_2449	0.44	+0.1
2,950,509	-		Sama_2449	0.44	+0.4
2,950,509	-		Sama_2449	0.44	-1.6
2,950,530	+		Sama_2449	0.46	+0.0
2,950,531	-		Sama_2449	0.46	-0.6
2,950,583	-		Sama_2449	0.49	-1.0
2,950,656	+		Sama_2449	0.53	+0.7
2,950,656	+		Sama_2449	0.53	-1.0
2,950,657	-		Sama_2449	0.53	+0.8
2,950,743	-		Sama_2449	0.59	-0.2
2,950,743	-		Sama_2449	0.59	-1.0
2,950,743	-		Sama_2449	0.59	-0.8
2,950,743	-		Sama_2449	0.59	+0.6
2,950,755	+		Sama_2449	0.59	-0.2
2,950,774	-		Sama_2449	0.61	-0.6
2,950,834	+		Sama_2449	0.64	-1.3
2,950,841	-		Sama_2449	0.65	-1.8
2,950,864	+		Sama_2449	0.66	+0.7
2,950,864	+		Sama_2449	0.66	+0.3
2,950,864	+		Sama_2449	0.66	+0.0
2,950,865	-		Sama_2449	0.66	-1.1
2,950,865	-		Sama_2449	0.66	-2.3
2,950,865	-		Sama_2449	0.66	-0.2
2,950,888	+		Sama_2449	0.68	+0.5
2,951,049	+		Sama_2449	0.78	-0.4
2,951,049	+		Sama_2449	0.78	+0.0
2,951,049	+		Sama_2449	0.78	+0.6
2,951,049	+		Sama_2449	0.78	-0.1
2,951,049	+		Sama_2449	0.78	+0.0
2,951,049	+		Sama_2449	0.78	-2.2
2,951,050	-		Sama_2449	0.78	-0.6
2,951,050	-		Sama_2449	0.78	-0.6
2,951,050	-		Sama_2449	0.78	-1.4
2,951,050	-		Sama_2449	0.78	-0.2
2,951,094	+		Sama_2449	0.80	+0.4
2,951,095	-		Sama_2449	0.80	-1.9
2,951,102	+		Sama_2449	0.81	+0.6
2,951,141	+		Sama_2449	0.83	-0.3
2,951,141	+		Sama_2449	0.83	+0.6
2,951,141	+		Sama_2449	0.83	-0.7
2,951,142	-		Sama_2449	0.83	+0.6
2,951,142	-		Sama_2449	0.83	-2.3
2,951,142	-		Sama_2449	0.83	-2.0
2,951,142	-		Sama_2449	0.83	-0.6
2,951,142	-		Sama_2449	0.83	-1.8
2,951,142	-		Sama_2449	0.83	-0.3
2,951,153	-		Sama_2449	0.84	-2.2
2,951,153	-		Sama_2449	0.84	-1.6
2,951,153	-		Sama_2449	0.84	+1.0
2,951,229	+		Sama_2449	0.89	+1.0
2,951,270	-				-0.4
2,951,357	+				-2.7
2,951,358	-				-1.2
2,951,358	-				-2.0
2,951,425	-				-0.6
2,951,425	-				-1.1
2,951,528	+				+0.5
2,951,528	+				-0.6
2,951,528	+				+1.1
2,951,529	-				+0.8
2,951,529	-				-1.2
2,951,529	-				-0.3
2,951,529	-				-1.0
2,951,529	-				-1.2
2,951,531	+				-2.1
2,951,532	-				+1.4
2,951,532	-				+2.7
2,951,532	-				-1.5
2,951,532	-				+0.7
2,951,532	-				-0.1
2,951,532	-				+1.0
2,951,532	-				-1.4
2,951,590	+		Sama_2450	0.13	-0.5
2,951,590	+		Sama_2450	0.13	+1.4
2,951,590	+		Sama_2450	0.13	+0.3
2,951,590	+		Sama_2450	0.13	-0.2
2,951,590	+		Sama_2450	0.13	+0.0
2,951,591	-		Sama_2450	0.13	+2.4
2,951,591	-		Sama_2450	0.13	-0.9
2,951,641	-		Sama_2450	0.17	-1.0
2,951,669	+		Sama_2450	0.19	+0.5
2,951,670	-		Sama_2450	0.19	-1.2
2,951,670	-		Sama_2450	0.19	+0.6
2,951,702	-		Sama_2450	0.22	-1.3
2,951,702	-		Sama_2450	0.22	-0.6
2,951,790	+		Sama_2450	0.29	+0.1
2,951,791	-		Sama_2450	0.29	-1.3
2,951,872	+		Sama_2450	0.35	+1.4
2,951,872	+		Sama_2450	0.35	+0.4
2,951,872	+		Sama_2450	0.35	-0.9
2,951,882	-		Sama_2450	0.36	-1.6
2,951,898	+		Sama_2450	0.37	-0.4
2,951,899	-		Sama_2450	0.38	-2.1
2,951,899	-		Sama_2450	0.38	-1.0
2,951,899	-		Sama_2450	0.38	-1.1
2,951,934	+		Sama_2450	0.40	-1.1
2,951,935	-		Sama_2450	0.40	+0.2
2,951,935	-		Sama_2450	0.40	-0.5
2,952,057	+		Sama_2450	0.50	+2.4
2,952,057	+		Sama_2450	0.50	-2.7
2,952,057	+		Sama_2450	0.50	-0.8
2,952,057	+		Sama_2450	0.50	-0.2
2,952,057	+		Sama_2450	0.50	+0.2
2,952,057	+		Sama_2450	0.50	+1.1
2,952,057	+		Sama_2450	0.50	+0.4
2,952,057	+		Sama_2450	0.50	-0.3
2,952,057	+		Sama_2450	0.50	+2.1
2,952,057	+		Sama_2450	0.50	-2.4
2,952,058	-		Sama_2450	0.50	-1.2
2,952,058	-		Sama_2450	0.50	-0.3
2,952,058	-		Sama_2450	0.50	-1.8
2,952,058	-		Sama_2450	0.50	+0.1
2,952,058	-		Sama_2450	0.50	-1.0
2,952,221	-		Sama_2450	0.63	-1.2
2,952,261	+		Sama_2450	0.66	+0.7
2,952,262	-		Sama_2450	0.66	-0.5
2,952,262	-		Sama_2450	0.66	-0.2
2,952,303	+		Sama_2450	0.69	+1.4
2,952,303	+		Sama_2450	0.69	-1.1
2,952,303	+		Sama_2450	0.69	+0.9
2,952,303	+		Sama_2450	0.69	+0.8
2,952,303	+		Sama_2450	0.69	-0.1
2,952,303	+		Sama_2450	0.69	-1.8
2,952,304	-		Sama_2450	0.69	-1.2
2,952,304	-		Sama_2450	0.69	-1.0
2,952,304	-		Sama_2450	0.69	-0.8
2,952,304	-		Sama_2450	0.69	+0.6
2,952,304	-		Sama_2450	0.69	-1.0
2,952,326	-		Sama_2450	0.71	+0.6
2,952,329	-		Sama_2450	0.71	+0.6
2,952,329	-		Sama_2450	0.71	-0.6
2,952,329	-		Sama_2450	0.71	-1.2
2,952,329	-		Sama_2450	0.71	-0.8
2,952,329	-		Sama_2450	0.71	-0.6
2,952,329	-		Sama_2450	0.71	-1.1
2,952,463	+		Sama_2450	0.82	-0.5
2,952,464	-		Sama_2450	0.82	-1.6
2,952,464	-		Sama_2450	0.82	-0.6
2,952,507	-		Sama_2450	0.85	+1.6
2,952,556	+		Sama_2450	0.89	-1.1
2,952,556	+		Sama_2450	0.89	-1.0
2,952,557	-		Sama_2450	0.89	-0.6
2,952,567	+				+0.5
2,952,567	+				-0.1
2,952,642	+				+0.7
2,952,642	+				+0.7
2,952,643	-				+0.5
2,952,692	+				+3.3
2,952,795	-				+0.4
2,952,795	-				+0.0
2,952,801	-				-1.2
2,952,832	+				+0.3
2,952,833	-				-1.4
2,952,865	+				+0.4
2,952,865	+				-2.4
2,952,866	-				-1.4
2,952,866	-				-0.1
2,952,866	-				-1.4
2,953,015	+		Sama_2451	0.12	+0.5
2,953,015	+		Sama_2451	0.12	-0.7
2,953,015	+		Sama_2451	0.12	+1.4
2,953,016	-		Sama_2451	0.12	-0.2
2,953,016	-		Sama_2451	0.12	-1.4
2,953,016	-		Sama_2451	0.12	+0.4
2,953,016	-		Sama_2451	0.12	-0.5
2,953,115	+		Sama_2451	0.16	+0.0
2,953,116	-		Sama_2451	0.16	-2.6
2,953,116	-		Sama_2451	0.16	-0.9
2,953,137	+		Sama_2451	0.17	+1.0
2,953,137	+		Sama_2451	0.17	-1.3
2,953,138	-		Sama_2451	0.17	-0.8
2,953,138	-		Sama_2451	0.17	-0.8
2,953,169	+		Sama_2451	0.18	+0.4
2,953,169	+		Sama_2451	0.18	+1.0
2,953,170	-		Sama_2451	0.18	-0.8
2,953,170	-		Sama_2451	0.18	-0.8
2,953,236	+		Sama_2451	0.21	+0.6
2,953,236	+		Sama_2451	0.21	+0.8
2,953,236	+		Sama_2451	0.21	+1.0
2,953,261	+		Sama_2451	0.22	-0.1
2,953,261	+		Sama_2451	0.22	+1.6
2,953,261	+		Sama_2451	0.22	+0.5
2,953,261	+		Sama_2451	0.22	+1.6
2,953,262	-		Sama_2451	0.22	-1.5
2,953,262	-		Sama_2451	0.22	+0.3
2,953,262	-		Sama_2451	0.22	-0.6
2,953,262	-		Sama_2451	0.22	-1.0
2,953,262	-		Sama_2451	0.22	-1.2
2,953,262	-		Sama_2451	0.22	-1.0
2,953,347	-		Sama_2451	0.25	-0.2
2,953,444	+		Sama_2451	0.29	+0.4
2,953,445	-		Sama_2451	0.29	+3.4
2,953,486	+		Sama_2451	0.31	+0.5
2,953,487	-		Sama_2451	0.31	-0.4
2,953,487	-		Sama_2451	0.31	-1.1
2,953,487	-		Sama_2451	0.31	+0.2
2,953,487	-		Sama_2451	0.31	+2.4
2,953,613	+		Sama_2451	0.36	-0.7
2,953,614	-		Sama_2451	0.36	+0.7
2,953,614	-		Sama_2451	0.36	-0.3
2,953,631	+		Sama_2451	0.37	+1.1
2,953,632	-		Sama_2451	0.37	-0.2
2,953,659	+		Sama_2451	0.38	-1.1
2,953,659	+		Sama_2451	0.38	+0.3
2,953,659	+		Sama_2451	0.38	+1.0
2,953,660	-		Sama_2451	0.38	-2.9
2,953,660	-		Sama_2451	0.38	-0.2