Strain Fitness in Shewanella amazonensis SB2B around Sama_2429

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,922,206	+		Sama_2427	0.33	-1.6
2,922,206	+		Sama_2427	0.33	-0.2
2,922,206	+		Sama_2427	0.33	-0.2
2,922,207	-		Sama_2427	0.33	+0.4
2,922,207	-		Sama_2427	0.33	+0.1
2,922,241	-		Sama_2427	0.42	-0.2
2,922,265	+		Sama_2427	0.48	-0.9
2,922,280	-		Sama_2427	0.52	+2.9
2,922,324	-		Sama_2427	0.63	-1.2
2,922,459	+				-1.6
2,922,460	-				-2.8
2,922,460	-				-0.0
2,922,506	+				+0.1
2,922,506	+				-0.6
2,922,506	+				-0.6
2,922,507	-				+0.9
2,922,526	+				+1.4
2,922,526	+				+0.2
2,922,656	+		Sama_2428	0.29	-0.6
2,922,656	+		Sama_2428	0.29	-1.0
2,922,656	+		Sama_2428	0.29	+0.6
2,922,679	+		Sama_2428	0.32	-0.3
2,922,679	+		Sama_2428	0.32	-0.1
2,922,811	+		Sama_2428	0.52	+0.7
2,922,811	+		Sama_2428	0.52	+0.1
2,922,812	-		Sama_2428	0.52	+0.2
2,922,812	-		Sama_2428	0.52	-0.0
2,922,812	-		Sama_2428	0.52	+0.6
2,922,838	+		Sama_2428	0.56	-0.2
2,922,840	+		Sama_2428	0.56	-1.5
2,922,840	+		Sama_2428	0.56	-0.1
2,922,841	-		Sama_2428	0.56	-0.3
2,922,854	+		Sama_2428	0.58	-0.4
2,922,854	+		Sama_2428	0.58	+0.1
2,922,854	+		Sama_2428	0.58	-0.6
2,922,855	-		Sama_2428	0.58	+0.8
2,922,855	-		Sama_2428	0.58	+1.7
2,922,855	-		Sama_2428	0.58	-0.6
2,922,916	+		Sama_2428	0.67	-0.6
2,922,940	+		Sama_2428	0.70	+0.2
2,922,940	+		Sama_2428	0.70	-1.2
2,922,940	+		Sama_2428	0.70	-2.3
2,922,940	+		Sama_2428	0.70	+1.7
2,922,940	+		Sama_2428	0.70	+0.6
2,922,941	-		Sama_2428	0.71	+0.5
2,922,941	-		Sama_2428	0.71	+0.2
2,922,941	-		Sama_2428	0.71	-0.1
2,922,942	+		Sama_2428	0.71	-0.5
2,922,942	+		Sama_2428	0.71	-1.0
2,922,942	+		Sama_2428	0.71	+1.6
2,922,943	-		Sama_2428	0.71	+1.2
2,922,943	-		Sama_2428	0.71	+0.7
2,922,952	+		Sama_2428	0.72	-0.6
2,923,022	-		Sama_2428	0.82	+0.4
2,923,232	-		Sama_2429	0.12	-2.6
2,923,235	-		Sama_2429	0.12	-2.0
2,923,235	-		Sama_2429	0.12	-3.6
2,923,356	+		Sama_2429	0.26	-0.8
2,923,357	-		Sama_2429	0.26	-1.7
2,923,357	-		Sama_2429	0.26	-1.5
2,923,398	+		Sama_2429	0.30	-1.0
2,923,399	-		Sama_2429	0.30	-1.4
2,923,399	-		Sama_2429	0.30	-2.0
2,923,399	-		Sama_2429	0.30	-2.7
2,923,408	-		Sama_2429	0.31	-0.6
2,923,475	+		Sama_2429	0.39	-2.5
2,923,476	-		Sama_2429	0.39	-1.9
2,923,597	+		Sama_2429	0.52	+0.6
2,923,598	-		Sama_2429	0.52	-0.8
2,923,598	-		Sama_2429	0.52	-2.2
2,923,655	+		Sama_2429	0.58	-0.6
2,923,655	+		Sama_2429	0.58	-1.2
2,923,656	-		Sama_2429	0.59	-0.2
2,923,736	+		Sama_2429	0.67	-0.2
2,923,829	-		Sama_2429	0.78	-2.8
2,923,829	-		Sama_2429	0.78	-0.2
2,923,910	+		Sama_2429	0.86	-1.0
2,924,082	-				+0.9
2,924,156	+				+1.1
2,924,165	+				+1.1
2,924,165	+				+1.7
2,924,166	-				+2.4
2,924,166	-				+1.9
2,924,230	-				+0.9
2,924,245	+				+1.5
2,924,245	+				+2.0
2,924,245	+				+1.2
2,924,245	+				+0.0
2,924,246	-				+1.3
2,924,246	-				+2.2
2,924,248	+				+0.9
2,924,248	+				+2.4
2,924,248	+				+1.1
2,924,248	+				+2.6
2,924,249	-				+2.9
2,924,249	-				+2.0
2,924,380	+		Sama_2430	0.50	+2.2
2,924,381	-		Sama_2430	0.50	+2.8
2,924,381	-		Sama_2430	0.50	+1.8
2,924,386	+		Sama_2430	0.52	+1.9
2,924,387	-		Sama_2430	0.52	-0.1
2,924,449	+		Sama_2430	0.76	+1.3
2,924,510	+				+0.3
2,924,510	+				+0.6
2,924,510	+				+1.7
2,924,511	-				-0.1
2,924,552	-				+0.9
2,924,555	+				+0.9
2,924,556	-				+1.7
2,924,571	-				+0.4
2,924,571	-				+0.8
2,924,611	+				+0.5
2,924,611	+				-1.8
2,924,611	+				-0.4
2,924,612	-				-0.1
2,924,612	-				-0.6
2,924,612	-				+0.3
2,924,631	-				-0.6
2,924,634	+				+2.0
2,924,634	+				-1.1
2,924,634	+				+0.9
2,924,635	-				+0.2
2,924,656	+				+0.4
2,924,657	-				-1.5
2,924,679	-				-0.4
2,924,735	+				-2.0
2,924,736	-				-1.0
2,924,736	-				-0.6
2,924,736	-				-1.4