Strain Fitness in Shewanella amazonensis SB2B around Sama_2408

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,894,352	-		Sama_2407	0.17	-0.2
2,894,374	+		Sama_2407	0.19	+0.4
2,894,375	-		Sama_2407	0.19	+0.2
2,894,375	-		Sama_2407	0.19	+2.0
2,894,375	-		Sama_2407	0.19	+0.4
2,894,399	-		Sama_2407	0.22	-0.0
2,894,404	+		Sama_2407	0.22	-0.0
2,894,405	-		Sama_2407	0.22	+0.0
2,894,405	-		Sama_2407	0.22	-0.6
2,894,424	+		Sama_2407	0.24	-0.4
2,894,425	-		Sama_2407	0.24	-0.3
2,894,425	-		Sama_2407	0.24	+0.4
2,894,425	-		Sama_2407	0.24	+0.2
2,894,425	-		Sama_2407	0.24	+0.9
2,894,426	+		Sama_2407	0.24	-1.0
2,894,427	-		Sama_2407	0.24	+1.4
2,894,427	-		Sama_2407	0.24	-0.6
2,894,427	-		Sama_2407	0.24	-2.5
2,894,440	+		Sama_2407	0.26	-1.5
2,894,440	+		Sama_2407	0.26	+0.7
2,894,441	-		Sama_2407	0.26	+0.1
2,894,521	+		Sama_2407	0.33	-0.0
2,894,522	-		Sama_2407	0.34	-0.2
2,894,537	+		Sama_2407	0.35	+0.6
2,894,678	+		Sama_2407	0.48	-1.5
2,894,678	+		Sama_2407	0.48	-1.0
2,894,678	+		Sama_2407	0.48	+1.7
2,894,678	+		Sama_2407	0.48	-0.4
2,894,678	+		Sama_2407	0.48	-0.4
2,894,678	+		Sama_2407	0.48	+0.7
2,894,678	+		Sama_2407	0.48	-2.1
2,894,679	-		Sama_2407	0.49	+0.1
2,894,679	-		Sama_2407	0.49	-0.9
2,894,679	-		Sama_2407	0.49	+0.3
2,894,679	-		Sama_2407	0.49	-0.4
2,894,679	-		Sama_2407	0.49	-0.9
2,894,679	-		Sama_2407	0.49	+2.9
2,894,679	-		Sama_2407	0.49	-0.0
2,894,679	-		Sama_2407	0.49	+0.3
2,894,679	-		Sama_2407	0.49	-0.8
2,894,679	-		Sama_2407	0.49	+0.1
2,894,679	-		Sama_2407	0.49	-1.5
2,894,679	-		Sama_2407	0.49	+0.2
2,894,680	+		Sama_2407	0.49	-0.8
2,894,681	-		Sama_2407	0.49	-0.6
2,894,749	+		Sama_2407	0.55	-0.5
2,894,750	-		Sama_2407	0.55	-0.5
2,894,750	-		Sama_2407	0.55	+0.6
2,894,750	-		Sama_2407	0.55	-0.7
2,894,750	-		Sama_2407	0.55	-0.1
2,894,750	-		Sama_2407	0.55	-0.4
2,894,750	-		Sama_2407	0.55	-0.2
2,894,803	+		Sama_2407	0.60	+0.1
2,894,803	+		Sama_2407	0.60	+0.2
2,894,803	+		Sama_2407	0.60	+0.2
2,894,803	+		Sama_2407	0.60	+0.1
2,894,804	-		Sama_2407	0.61	-0.4
2,894,831	+		Sama_2407	0.63	+0.3
2,894,832	-		Sama_2407	0.63	+0.4
2,894,832	-		Sama_2407	0.63	-0.3
2,894,839	-		Sama_2407	0.64	-0.7
2,894,946	+		Sama_2407	0.74	+0.8
2,894,946	+		Sama_2407	0.74	-1.1
2,894,946	+		Sama_2407	0.74	-0.1
2,894,946	+		Sama_2407	0.74	+2.0
2,894,946	+		Sama_2407	0.74	+0.3
2,894,947	-		Sama_2407	0.74	-0.4
2,894,963	+		Sama_2407	0.76	-0.9
2,894,963	+		Sama_2407	0.76	+0.1
2,895,054	-		Sama_2407	0.84	+0.9
2,895,082	+		Sama_2407	0.87	-1.5
2,895,082	+		Sama_2407	0.87	-0.9
2,895,083	-		Sama_2407	0.87	+0.0
2,895,083	-		Sama_2407	0.87	+1.2
2,895,083	-		Sama_2407	0.87	+0.6
2,895,083	-		Sama_2407	0.87	+0.1
2,895,085	+		Sama_2407	0.87	-1.2
2,895,085	+		Sama_2407	0.87	+0.5
2,895,085	+		Sama_2407	0.87	+0.1
2,895,086	-		Sama_2407	0.88	-0.8
2,895,086	-		Sama_2407	0.88	+0.2
2,895,086	-		Sama_2407	0.88	+1.1
2,895,086	-		Sama_2407	0.88	-1.1
2,895,095	+		Sama_2407	0.88	-0.5
2,895,096	-		Sama_2407	0.89	+0.4
2,895,096	-		Sama_2407	0.89	+0.6
2,895,096	-		Sama_2407	0.89	-1.8
2,895,128	+				-0.3
2,895,129	-				-0.2
2,895,197	+				-0.3
2,895,198	-				-0.9
2,895,204	+				+0.4
2,895,204	+				+0.8
2,895,204	+				-1.4
2,895,204	+				-0.4
2,895,204	+				-1.6
2,895,205	-				+1.4
2,895,205	-				+0.3
2,895,205	-				+2.2
2,895,205	-				-0.2
2,895,205	-				-0.8
2,895,205	-				-0.5
2,895,229	+				-0.6
2,895,291	+				+0.5
2,895,291	+				+1.0
2,895,292	-				-0.5
2,895,292	-				+1.0
2,895,292	-				-0.2
2,895,315	+				+1.5
2,895,315	+				+0.9
2,895,315	+				-2.9
2,895,315	+				-2.9
2,895,315	+				+0.4
2,895,316	-				-0.8
2,895,321	+				-0.4
2,895,322	-				-1.9
2,895,401	-				-2.6
2,895,401	-				-1.5
2,895,401	-				-2.6
2,895,473	+		Sama_2408	0.22	-3.0
2,895,474	-		Sama_2408	0.22	-3.1
2,895,524	+		Sama_2408	0.31	-0.7
2,895,600	-		Sama_2408	0.44	-2.6
2,895,696	+		Sama_2408	0.61	-1.6
2,895,696	+		Sama_2408	0.61	-2.1
2,895,696	+		Sama_2408	0.61	-0.2
2,895,696	+		Sama_2408	0.61	-1.3
2,895,697	-		Sama_2408	0.61	-1.0
2,895,697	-		Sama_2408	0.61	-1.0
2,895,815	+		Sama_2408	0.81	-1.2
2,895,833	+		Sama_2408	0.84	-2.3
2,895,833	+		Sama_2408	0.84	-2.0
2,895,894	+				-2.1
2,895,985	+				-0.2
2,896,043	-				-0.5
2,896,043	-				-1.5
2,896,075	+		Sama_2409	0.11	-1.0
2,896,075	+		Sama_2409	0.11	+0.1
2,896,076	-		Sama_2409	0.12	-0.1
2,896,076	-		Sama_2409	0.12	+0.5
2,896,102	-		Sama_2409	0.21	-0.5
2,896,102	-		Sama_2409	0.21	-0.2
2,896,102	-		Sama_2409	0.21	+1.8
2,896,123	-		Sama_2409	0.28	-0.3
2,896,240	+		Sama_2409	0.67	+0.9
2,896,244	-		Sama_2409	0.68	+0.6
2,896,244	-		Sama_2409	0.68	-0.5
2,896,320	+				-1.5
2,896,321	-				+2.6
2,896,321	-				-2.2
2,896,321	-				-0.3
2,896,321	-				-0.0
2,896,321	-				+1.8
2,896,321	-				+0.4
2,896,326	-				+1.8
2,896,337	+				+0.1
2,896,337	+				-1.5
2,896,338	-				-1.2
2,896,338	-				-0.5
2,896,339	+				+1.0
2,896,339	+				-1.5
2,896,339	+				-2.2
2,896,339	+				+0.6
2,896,339	+				-0.9
2,896,339	+				+0.0
2,896,339	+				+0.4
2,896,340	-				-1.8
2,896,340	-				+0.9
2,896,340	-				+1.6
2,896,340	-				-0.2
2,896,340	-				+0.6
2,896,340	-				-2.0
2,896,340	-				-0.1
2,896,340	-				-0.6
2,896,340	-				-0.4
2,896,340	-				-1.5
2,896,345	+				+0.4
2,896,345	+				-1.5
2,896,345	+				-1.2
2,896,346	-				-1.2
2,896,346	-				-0.8
2,896,346	-				-0.3
2,896,397	-				+2.4
2,896,397	-				+0.4
2,896,397	-				+0.4
2,896,439	+				-0.5
2,896,451	-				-1.2
2,896,456	-				-1.3
2,896,461	-				+0.9
2,896,489	-				-1.1
2,896,495	-				-0.1
2,896,508	-				+0.6
2,896,562	-				+0.4
2,896,566	+				+0.4
2,896,728	+		Sama_2410	0.12	-0.6
2,896,728	+		Sama_2410	0.12	-1.2
2,896,729	-		Sama_2410	0.13	-2.5
2,896,729	-		Sama_2410	0.13	-1.2
2,896,872	+		Sama_2410	0.32	-2.2
2,896,873	-		Sama_2410	0.33	-0.8
2,896,877	+		Sama_2410	0.33	+1.4
2,896,878	-		Sama_2410	0.33	-1.6
2,896,913	+		Sama_2410	0.38	-2.7