Strain Fitness in Shewanella amazonensis SB2B around Sama_2281

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,745,545	-		Sama_2279	0.38	-0.6
2,745,692	-		Sama_2279	0.77	+0.3
2,745,692	-		Sama_2279	0.77	-0.3
2,745,695	-		Sama_2279	0.77	-2.2
2,745,728	-		Sama_2279	0.86	-3.1
2,745,728	-		Sama_2279	0.86	-1.5
2,745,770	-				+0.4
2,745,770	-				-1.5
2,745,770	-				-0.7
2,745,770	-				-0.9
2,745,770	-				+1.6
2,745,808	-				+0.5
2,745,828	-				+0.2
2,745,828	-				+0.3
2,745,828	-				+0.0
2,745,830	-				+0.9
2,745,830	-				-0.6
2,745,853	-				+1.1
2,745,853	-				-1.5
2,746,047	-	fliA	Sama_2280	0.31	-1.2
2,746,047	-	fliA	Sama_2280	0.31	-0.1
2,746,047	-	fliA	Sama_2280	0.31	+0.8
2,746,094	-	fliA	Sama_2280	0.37	-0.5
2,746,100	-	fliA	Sama_2280	0.38	-0.3
2,746,109	-	fliA	Sama_2280	0.39	-0.2
2,746,109	-	fliA	Sama_2280	0.39	-0.2
2,746,123	-	fliA	Sama_2280	0.41	-0.3
2,746,147	-	fliA	Sama_2280	0.45	-1.5
2,746,155	-	fliA	Sama_2280	0.46	-0.0
2,746,155	-	fliA	Sama_2280	0.46	+0.6
2,746,155	-	fliA	Sama_2280	0.46	+0.8
2,746,235	-	fliA	Sama_2280	0.57	+0.3
2,746,261	-	fliA	Sama_2280	0.60	+0.8
2,746,323	+	fliA	Sama_2280	0.69	+1.0
2,746,430	-	fliA	Sama_2280	0.84	-1.9
2,746,430	-	fliA	Sama_2280	0.84	-2.4
2,746,455	+	fliA	Sama_2280	0.87	+1.0
2,746,455	+	fliA	Sama_2280	0.87	+1.0
2,746,456	-	fliA	Sama_2280	0.88	+1.0
2,746,456	-	fliA	Sama_2280	0.88	-0.4
2,746,456	-	fliA	Sama_2280	0.88	+1.0
2,746,456	-	fliA	Sama_2280	0.88	-0.2
2,746,456	-	fliA	Sama_2280	0.88	-0.7
2,746,487	+				+1.9
2,746,509	+				-1.3
2,746,510	-				-1.4
2,746,525	-				+0.5
2,746,525	-				+0.9
2,746,526	+				-1.5
2,746,527	-				-0.6
2,746,527	-				-1.4
2,746,540	-				+0.6
2,746,540	-				-1.0
2,746,578	-				-1.0
2,746,578	-				+0.4
2,746,628	-		Sama_2281	0.10	-1.3
2,746,646	-		Sama_2281	0.12	-1.3
2,746,646	-		Sama_2281	0.12	-2.8
2,746,663	-		Sama_2281	0.14	-1.0
2,746,698	-		Sama_2281	0.18	-1.9
2,746,698	-		Sama_2281	0.18	-3.5
2,746,715	-		Sama_2281	0.20	-1.5
2,746,719	-		Sama_2281	0.21	-1.9
2,746,838	-		Sama_2281	0.34	-1.2
2,746,847	-		Sama_2281	0.35	-2.2
2,746,847	-		Sama_2281	0.35	-2.6
2,746,847	-		Sama_2281	0.35	-3.3
2,746,941	-		Sama_2281	0.46	-2.3
2,746,941	-		Sama_2281	0.46	-2.4
2,746,941	-		Sama_2281	0.46	-3.0
2,746,941	-		Sama_2281	0.46	-2.0
2,746,941	-		Sama_2281	0.46	-1.0
2,746,941	-		Sama_2281	0.46	-1.5
2,746,944	-		Sama_2281	0.46	-2.7
2,746,944	-		Sama_2281	0.46	-2.4
2,746,944	-		Sama_2281	0.46	-3.1
2,747,018	-		Sama_2281	0.54	-2.4
2,747,114	-		Sama_2281	0.65	-1.9
2,747,124	-		Sama_2281	0.66	-2.8
2,747,124	-		Sama_2281	0.66	-2.6
2,747,184	-		Sama_2281	0.73	-1.0
2,747,300	-		Sama_2281	0.86	-2.9
2,747,374	-				-0.3
2,747,390	-				-0.7
2,747,420	-				-3.9
2,747,426	-				-2.4
2,747,460	-				-1.3
2,747,460	-				-0.5
2,747,460	-				-1.5
2,747,460	-				-2.9
2,747,460	-				-0.5
2,747,460	-				-1.0
2,747,460	-				-1.9
2,747,460	-				-2.8
2,747,460	-				-1.4
2,747,460	-				-1.2
2,747,460	-				+0.8
2,747,544	-				-0.1
2,747,605	-	flhF	Sama_2282	0.13	-0.1
2,747,605	-	flhF	Sama_2282	0.13	-0.4
2,747,653	-	flhF	Sama_2282	0.16	-1.5
2,747,653	-	flhF	Sama_2282	0.16	+0.2
2,747,827	-	flhF	Sama_2282	0.29	+1.6
2,747,827	-	flhF	Sama_2282	0.29	-2.4
2,747,827	-	flhF	Sama_2282	0.29	+0.3
2,747,827	-	flhF	Sama_2282	0.29	-1.9
2,747,827	-	flhF	Sama_2282	0.29	-0.5
2,747,827	-	flhF	Sama_2282	0.29	-0.9
2,747,827	-	flhF	Sama_2282	0.29	+0.1
2,747,827	-	flhF	Sama_2282	0.29	-0.9
2,747,833	-	flhF	Sama_2282	0.29	-1.5
2,747,836	-	flhF	Sama_2282	0.30	-0.3
2,747,836	-	flhF	Sama_2282	0.30	-0.5
2,747,836	-	flhF	Sama_2282	0.30	-1.8
2,747,836	-	flhF	Sama_2282	0.30	-0.5
2,747,836	-	flhF	Sama_2282	0.30	-0.7
2,747,836	-	flhF	Sama_2282	0.30	-1.5
2,748,030	-	flhF	Sama_2282	0.44	-1.3
2,748,088	-	flhF	Sama_2282	0.48	-1.5
2,748,088	-	flhF	Sama_2282	0.48	-0.7
2,748,093	-	flhF	Sama_2282	0.48	-0.7
2,748,164	-	flhF	Sama_2282	0.53	-0.7
2,748,164	-	flhF	Sama_2282	0.53	+0.3
2,748,164	-	flhF	Sama_2282	0.53	-0.7
2,748,304	-	flhF	Sama_2282	0.63	-1.8
2,748,393	-	flhF	Sama_2282	0.70	-0.7