Strain Fitness in Shewanella amazonensis SB2B around Sama_2220

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,682,713	+		Sama_2219	0.24	-0.1
2,682,714	-		Sama_2219	0.24	-0.3
2,682,714	-		Sama_2219	0.24	+0.2
2,682,799	+		Sama_2219	0.33	-0.3
2,682,800	-		Sama_2219	0.33	+0.2
2,682,800	-		Sama_2219	0.33	-0.6
2,682,800	-		Sama_2219	0.33	+1.0
2,682,800	-		Sama_2219	0.33	+1.2
2,682,800	-		Sama_2219	0.33	-0.1
2,682,935	-		Sama_2219	0.47	+0.1
2,683,096	+		Sama_2219	0.63	+1.2
2,683,096	+		Sama_2219	0.63	-1.3
2,683,119	+		Sama_2219	0.65	+0.4
2,683,172	-		Sama_2219	0.71	+0.9
2,683,193	+		Sama_2219	0.73	+0.7
2,683,193	+		Sama_2219	0.73	+0.9
2,683,193	+		Sama_2219	0.73	-2.5
2,683,193	+		Sama_2219	0.73	+0.8
2,683,197	+		Sama_2219	0.73	+0.4
2,683,198	-		Sama_2219	0.73	-1.1
2,683,198	-		Sama_2219	0.73	-0.1
2,683,303	-		Sama_2219	0.84	-0.2
2,683,407	-				+0.1
2,683,441	+				-0.2
2,683,441	+				-0.6
2,683,441	+				-0.4
2,683,441	+				+0.4
2,683,442	-				+1.2
2,683,443	+				+1.5
2,683,443	+				+0.2
2,683,444	-				+0.8
2,683,444	-				-1.3
2,683,444	-				+0.8
2,683,444	-				-1.3
2,683,518	-				+0.9
2,683,518	-				+0.5
2,683,524	+				+1.7
2,683,525	-				-2.1
2,683,525	-				-1.1
2,683,581	-				-0.6
2,683,581	-				+0.6
2,683,581	-				-0.0
2,683,584	+				-0.5
2,683,585	-				+0.2
2,683,690	-				+0.5
2,683,690	-				+0.4
2,683,709	+				+0.2
2,683,710	-				+0.4
2,683,710	-				-0.9
2,683,710	-				-1.4
2,683,710	-				+0.2
2,683,713	+				+0.7
2,683,713	+				-1.6
2,683,713	+				+1.9
2,683,713	+				+1.4
2,683,714	-				+1.8
2,683,714	-				-1.3
2,683,714	-				+0.1
2,683,714	-				-0.3
2,683,714	-				+0.9
2,683,714	-				+0.4
2,683,714	-				+1.1
2,683,714	-				+1.0
2,683,714	-				+0.7
2,683,714	-				+1.5
2,683,719	-				+1.8
2,683,719	-				+1.8
2,683,719	-				+0.9
2,683,720	+				+2.2
2,683,721	-				-1.1
2,683,721	-				-0.9
2,683,756	-				+0.8
2,683,756	-				+1.4
2,683,756	-				+0.1
2,683,756	-				+1.2
2,683,756	-				-0.3
2,683,761	+				+0.2
2,683,762	-				-1.5
2,683,762	-				+0.1
2,683,762	-				+1.9
2,683,793	-				-1.1
2,683,801	+				+0.7
2,683,801	+				+1.0
2,683,947	-		Sama_2220	0.16	+1.2
2,683,947	-		Sama_2220	0.16	+0.8
2,683,947	-		Sama_2220	0.16	+0.7
2,683,947	-		Sama_2220	0.16	-1.2
2,684,002	+		Sama_2220	0.20	+0.5
2,684,002	+		Sama_2220	0.20	-0.3
2,684,003	-		Sama_2220	0.20	+0.5
2,684,007	-		Sama_2220	0.20	+0.4
2,684,007	-		Sama_2220	0.20	+1.4
2,684,007	-		Sama_2220	0.20	+0.6
2,684,007	-		Sama_2220	0.20	-1.7
2,684,068	+		Sama_2220	0.24	+1.2
2,684,068	+		Sama_2220	0.24	-1.3
2,684,068	+		Sama_2220	0.24	-1.3
2,684,069	-		Sama_2220	0.24	+0.3
2,684,069	-		Sama_2220	0.24	+1.8
2,684,069	-		Sama_2220	0.24	+1.0
2,684,069	-		Sama_2220	0.24	-0.6
2,684,069	-		Sama_2220	0.24	-0.3
2,684,099	+		Sama_2220	0.26	+0.6
2,684,111	+		Sama_2220	0.27	-0.2
2,684,112	-		Sama_2220	0.27	+1.0
2,684,112	-		Sama_2220	0.27	+0.9
2,684,112	-		Sama_2220	0.27	-1.9
2,684,112	-		Sama_2220	0.27	-0.9
2,684,154	-		Sama_2220	0.30	+1.4
2,684,158	+		Sama_2220	0.30	+1.2
2,684,162	-		Sama_2220	0.30	-0.3
2,684,162	-		Sama_2220	0.30	-0.8
2,684,347	-		Sama_2220	0.42	+0.5
2,684,465	+		Sama_2220	0.50	+0.5
2,684,466	-		Sama_2220	0.50	-1.3
2,684,486	+		Sama_2220	0.51	+1.7
2,684,486	+		Sama_2220	0.51	-2.7
2,684,550	+		Sama_2220	0.55	+0.2
2,684,550	+		Sama_2220	0.55	-1.2
2,684,607	-		Sama_2220	0.59	+3.4
2,684,607	-		Sama_2220	0.59	-1.1
2,684,622	+		Sama_2220	0.60	+2.5
2,684,623	-		Sama_2220	0.60	-0.8
2,684,639	-		Sama_2220	0.61	-0.6
2,684,690	+		Sama_2220	0.64	+0.4
2,684,690	+		Sama_2220	0.64	+1.5
2,684,690	+		Sama_2220	0.64	-1.2
2,684,690	+		Sama_2220	0.64	+0.7
2,684,690	+		Sama_2220	0.64	+2.1
2,684,690	+		Sama_2220	0.64	-0.8
2,684,691	-		Sama_2220	0.65	+0.2
2,684,691	-		Sama_2220	0.65	-0.6
2,684,691	-		Sama_2220	0.65	-0.7
2,684,691	-		Sama_2220	0.65	-0.2
2,684,743	+		Sama_2220	0.68	+0.5
2,684,744	-		Sama_2220	0.68	+0.9
2,684,767	+		Sama_2220	0.69	-0.1
2,684,781	+		Sama_2220	0.70	+1.9
2,684,781	+		Sama_2220	0.70	+0.4
2,684,782	-		Sama_2220	0.70	+0.5
2,684,782	-		Sama_2220	0.70	+1.1
2,684,782	-		Sama_2220	0.70	-0.6
2,684,782	-		Sama_2220	0.70	-1.6
2,684,809	-		Sama_2220	0.72	+0.7
2,684,809	-		Sama_2220	0.72	-0.2
2,684,809	-		Sama_2220	0.72	+1.0
2,684,894	+		Sama_2220	0.78	+0.2
2,684,894	+		Sama_2220	0.78	+1.0
2,684,895	-		Sama_2220	0.78	+0.2
2,684,895	-		Sama_2220	0.78	-0.8
2,684,958	+		Sama_2220	0.82	-0.8
2,684,979	+		Sama_2220	0.83	+0.7
2,684,979	+		Sama_2220	0.83	+0.6
2,684,980	-		Sama_2220	0.83	+0.3
2,684,980	-		Sama_2220	0.83	+1.9
2,684,998	+		Sama_2220	0.84	+1.8
2,684,999	-		Sama_2220	0.85	+0.2
2,684,999	-		Sama_2220	0.85	+0.2
2,684,999	-		Sama_2220	0.85	-0.1
2,685,020	+		Sama_2220	0.86	+1.2
2,685,021	-		Sama_2220	0.86	+1.2
2,685,021	-		Sama_2220	0.86	+0.2
2,685,021	-		Sama_2220	0.86	+0.5
2,685,063	-		Sama_2220	0.89	+2.1
2,685,118	+				-1.1
2,685,166	+				+1.5
2,685,166	+				-1.1
2,685,177	+				+0.7
2,685,178	-				+2.2
2,685,182	+				-0.1
2,685,189	-				-0.1
2,685,237	-				-0.3
2,685,237	-				+1.8
2,685,237	-				+0.4
2,685,237	-				+0.9
2,685,257	+				+0.0
2,685,257	+				-1.3
2,685,257	+				-0.1
2,685,258	-				+0.6
2,685,258	-				-1.3
2,685,258	-				+1.0
2,685,316	+				+0.2
2,685,328	+				+0.3
2,685,329	-				+0.7
2,685,333	+				+0.8
2,685,333	+				+1.0
2,685,334	-				-0.9
2,685,334	-				+0.2
2,685,381	-				+0.2
2,685,408	+				-0.3
2,685,534	-	phhB	Sama_2221	0.27	+1.0
2,685,552	-	phhB	Sama_2221	0.33	-0.3
2,685,634	+	phhB	Sama_2221	0.57	-0.4
2,685,634	+	phhB	Sama_2221	0.57	-1.3
2,685,635	-	phhB	Sama_2221	0.57	-1.3
2,685,672	+	phhB	Sama_2221	0.68	+0.2
2,685,672	+	phhB	Sama_2221	0.68	-0.7
2,685,672	+	phhB	Sama_2221	0.68	-1.1
2,685,768	+				-0.5
2,685,781	-				-0.5
2,685,781	-				+0.3
2,685,791	+				-0.5
2,685,792	-				+0.6
2,685,792	-				+0.7
2,685,800	+				-0.2
2,685,800	+				+0.1
2,685,800	+				+1.8
2,685,801	-				+1.4
2,685,804	+				-0.6
2,685,917	+	phhA	Sama_2222	0.14	-0.7
2,685,917	+	phhA	Sama_2222	0.14	+1.2
2,685,917	+	phhA	Sama_2222	0.14	-0.8
2,685,917	+	phhA	Sama_2222	0.14	-1.8
2,685,918	-	phhA	Sama_2222	0.14	+1.4
2,685,948	-	phhA	Sama_2222	0.18	-2.2
2,685,948	-	phhA	Sama_2222	0.18	+0.5
2,685,948	-	phhA	Sama_2222	0.18	+0.5
2,685,948	-	phhA	Sama_2222	0.18	-0.3
2,685,950	+	phhA	Sama_2222	0.18	-1.8
2,685,950	+	phhA	Sama_2222	0.18	-1.9
2,685,950	+	phhA	Sama_2222	0.18	-0.3
2,685,951	-	phhA	Sama_2222	0.18	+0.2
2,685,956	+	phhA	Sama_2222	0.19	-1.4
2,685,957	-	phhA	Sama_2222	0.19	-1.2
2,686,010	+	phhA	Sama_2222	0.26	+0.0
2,686,010	+	phhA	Sama_2222	0.26	-2.4
2,686,010	+	phhA	Sama_2222	0.26	+0.6
2,686,024	+	phhA	Sama_2222	0.27	+1.0
2,686,025	-	phhA	Sama_2222	0.28	-0.0
2,686,064	-	phhA	Sama_2222	0.32	+1.4
2,686,064	-	phhA	Sama_2222	0.32	-1.9
2,686,067	+	phhA	Sama_2222	0.33	-1.1
2,686,067	+	phhA	Sama_2222	0.33	+0.4
2,686,067	+	phhA	Sama_2222	0.33	-1.8
2,686,068	-	phhA	Sama_2222	0.33	+0.1
2,686,112	+	phhA	Sama_2222	0.39	+0.4
2,686,113	-	phhA	Sama_2222	0.39	+0.5
2,686,135	+	phhA	Sama_2222	0.41	+1.2
2,686,135	+	phhA	Sama_2222	0.41	+0.7
2,686,135	+	phhA	Sama_2222	0.41	-1.3
2,686,136	-	phhA	Sama_2222	0.42	-1.3
2,686,136	-	phhA	Sama_2222	0.42	+0.3
2,686,136	-	phhA	Sama_2222	0.42	+0.0
2,686,136	-	phhA	Sama_2222	0.42	+0.5
2,686,177	+	phhA	Sama_2222	0.47	-0.8
2,686,177	+	phhA	Sama_2222	0.47	+0.3
2,686,178	-	phhA	Sama_2222	0.47	+0.5
2,686,178	-	phhA	Sama_2222	0.47	+0.5
2,686,178	-	phhA	Sama_2222	0.47	-0.5