Strain Fitness in Shewanella amazonensis SB2B around Sama_2190

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,647,238	+		Sama_2188	0.12	-0.8
2,647,239	-		Sama_2188	0.12	+0.5
2,647,239	-		Sama_2188	0.12	+1.3
2,647,239	-		Sama_2188	0.12	-1.3
2,647,268	+		Sama_2188	0.20	-1.0
2,647,288	-		Sama_2188	0.26	-1.2
2,647,289	+		Sama_2188	0.26	-1.7
2,647,290	-		Sama_2188	0.26	+1.2
2,647,310	+		Sama_2188	0.32	-1.6
2,647,325	+		Sama_2188	0.36	+0.2
2,647,326	-		Sama_2188	0.36	+0.6
2,647,479	-		Sama_2188	0.79	+1.1
2,647,513	+		Sama_2188	0.88	-0.1
2,647,546	-				+1.2
2,647,546	-				-0.3
2,647,566	+				-1.6
2,647,567	-				+0.2
2,647,590	+				+0.1
2,647,590	+				-0.6
2,647,590	+				-0.8
2,647,591	-				+0.8
2,647,591	-				-2.8
2,647,591	-				-1.8
2,647,591	-				+0.9
2,647,591	-				+0.1
2,647,596	+				-1.6
2,647,597	-				+1.5
2,647,828	-		Sama_2189	0.62	+0.5
2,647,869	-		Sama_2189	0.75	+0.6
2,647,869	-		Sama_2189	0.75	+0.5
2,647,937	+				-0.3
2,647,938	-				+1.3
2,647,961	-				+0.9
2,647,961	-				-0.3
2,647,966	+				+0.5
2,647,966	+				-0.2
2,647,966	+				-0.6
2,647,966	+				-1.1
2,647,966	+				+0.4
2,647,966	+				-0.2
2,647,966	+				-0.6
2,647,967	-				+0.5
2,647,967	-				-1.2
2,647,967	-				-0.6
2,647,967	-				+0.5
2,647,967	-				+0.4
2,647,984	+				+0.9
2,647,984	+				-0.3
2,647,984	+				+0.3
2,647,985	-				+0.9
2,647,985	-				+0.9
2,647,985	-				-0.0
2,647,986	+				-0.3
2,647,986	+				+1.2
2,647,986	+				-0.9
2,647,986	+				+0.2
2,647,986	+				+1.8
2,647,987	-				+0.6
2,647,987	-				-0.2
2,648,015	-				+0.3
2,648,087	-				+1.1
2,648,134	-				-1.9
2,648,143	-				-0.5
2,648,143	-				-0.5
2,648,151	+				-0.1
2,648,151	+				-0.9
2,648,152	-				-0.0
2,648,152	-				-2.7
2,648,254	-	secF	Sama_2190	0.11	-1.3
2,648,254	-	secF	Sama_2190	0.11	-1.1
2,648,266	-	secF	Sama_2190	0.12	-2.8
2,648,266	-	secF	Sama_2190	0.12	-1.3
2,648,381	-	secF	Sama_2190	0.24	-1.9
2,648,480	-	secF	Sama_2190	0.35	-1.6
2,648,480	-	secF	Sama_2190	0.35	-1.8
2,648,644	-	secF	Sama_2190	0.52	+0.2
2,649,138	-				-1.3
2,649,386	-	secD	Sama_2191	0.15	-1.8
2,649,545	-	secD	Sama_2191	0.23	-1.6
2,649,548	-	secD	Sama_2191	0.24	-0.8
2,649,548	-	secD	Sama_2191	0.24	-1.3
2,649,780	-	secD	Sama_2191	0.36	-2.1
2,649,780	-	secD	Sama_2191	0.36	-1.8
2,649,822	-	secD	Sama_2191	0.38	-1.1
2,649,842	-	secD	Sama_2191	0.39	-2.6
2,649,842	-	secD	Sama_2191	0.39	-1.1
2,649,842	-	secD	Sama_2191	0.39	-0.8