Strain Fitness in Shewanella amazonensis SB2B around Sama_2175

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,630,759	-		Sama_2174	0.52	-1.6
2,630,857	+		Sama_2174	0.58	-3.6
2,630,857	+		Sama_2174	0.58	-1.8
2,630,858	-		Sama_2174	0.58	-0.8
2,630,858	-		Sama_2174	0.58	-1.8
2,630,858	-		Sama_2174	0.58	-1.6
2,630,858	-		Sama_2174	0.58	-2.9
2,630,928	+		Sama_2174	0.62	-1.9
2,630,941	-		Sama_2174	0.63	-2.4
2,631,053	-		Sama_2174	0.70	-3.1
2,631,116	+		Sama_2174	0.74	-1.1
2,631,116	+		Sama_2174	0.74	-0.8
2,631,116	+		Sama_2174	0.74	+0.2
2,631,117	-		Sama_2174	0.74	-1.9
2,631,117	-		Sama_2174	0.74	-3.9
2,631,193	+		Sama_2174	0.79	-1.6
2,631,194	-		Sama_2174	0.79	-2.2
2,631,194	-		Sama_2174	0.79	-0.3
2,631,217	+		Sama_2174	0.80	-1.6
2,631,217	+		Sama_2174	0.80	-0.8
2,631,217	+		Sama_2174	0.80	-3.3
2,631,217	+		Sama_2174	0.80	-2.5
2,631,218	-		Sama_2174	0.80	-1.8
2,631,218	-		Sama_2174	0.80	-2.5
2,631,300	+		Sama_2174	0.85	-3.7
2,631,300	+		Sama_2174	0.85	-1.1
2,631,300	+		Sama_2174	0.85	-1.2
2,631,300	+		Sama_2174	0.85	-1.9
2,631,300	+		Sama_2174	0.85	-1.9
2,631,301	-		Sama_2174	0.85	-3.1
2,631,317	+		Sama_2174	0.86	+1.2
2,631,317	+		Sama_2174	0.86	-2.1
2,631,317	+		Sama_2174	0.86	-0.8
2,631,318	-		Sama_2174	0.86	-1.3
2,631,340	+		Sama_2174	0.88	-1.8
2,631,346	+		Sama_2174	0.88	-1.9
2,631,346	+		Sama_2174	0.88	-3.4
2,631,356	-		Sama_2174	0.89	+0.2
2,631,403	-				-1.8
2,631,444	+				-3.9
2,631,445	-				-4.0
2,631,445	-				-2.6
2,631,475	-				-1.3
2,631,578	-				+0.2
2,631,641	+				-0.8
2,631,689	+				-0.1
2,631,689	+				+1.3
2,631,690	-				-0.1
2,631,690	-				-0.7
2,631,697	+				-2.6
2,631,698	-				-0.7
2,631,811	-		Sama_2175	0.19	-1.0
2,631,823	-		Sama_2175	0.21	-2.2
2,631,823	-		Sama_2175	0.21	-1.3
2,631,942	-		Sama_2175	0.43	-1.6
2,632,000	+		Sama_2175	0.53	-0.8
2,632,000	+		Sama_2175	0.53	-1.2
2,632,000	+		Sama_2175	0.53	-2.2
2,632,001	-		Sama_2175	0.53	+0.2
2,632,001	-		Sama_2175	0.53	-0.2
2,632,028	-		Sama_2175	0.58	-0.8
2,632,028	-		Sama_2175	0.58	-0.2
2,632,035	-		Sama_2175	0.59	-0.3
2,632,059	+		Sama_2175	0.63	-1.9
2,632,060	-		Sama_2175	0.63	+0.8
2,632,060	-		Sama_2175	0.63	+0.4
2,632,115	-		Sama_2175	0.73	-0.6
2,632,115	-		Sama_2175	0.73	-2.8
2,632,216	+				+0.4
2,632,216	+				-0.2
2,632,217	-				-1.6
2,632,288	+				-0.3
2,632,288	+				-0.3
2,632,371	+		Sama_2176	0.16	+2.8
2,632,439	+		Sama_2176	0.26	-0.3
2,632,439	+		Sama_2176	0.26	-1.4
2,632,597	+		Sama_2176	0.48	-0.3
2,632,606	+		Sama_2176	0.49	-0.3
2,632,606	+		Sama_2176	0.49	-1.6
2,632,634	+		Sama_2176	0.53	-1.8
2,632,634	+		Sama_2176	0.53	-2.8
2,632,634	+		Sama_2176	0.53	-1.3
2,632,729	+		Sama_2176	0.67	+0.2
2,632,856	-		Sama_2176	0.85	-0.6
2,632,864	-		Sama_2176	0.86	-1.5
2,632,888	+		Sama_2176	0.89	-0.3
2,632,888	+		Sama_2176	0.89	-2.1
2,632,888	+		Sama_2176	0.89	-1.9
2,632,957	-				+0.2
2,632,960	+				+0.4
2,632,960	+				+0.9
2,632,960	+				-0.1
2,632,960	+				-2.0
2,632,960	+				+2.0
2,632,960	+				+1.2
2,632,961	-				+0.9
2,632,961	-				-0.3
2,633,041	-				-0.4
2,633,061	+				-0.8
2,633,062	-				-1.3
2,633,062	-				-0.2
2,633,082	-				+0.8
2,633,082	-				-0.3
2,633,136	+				+1.2
2,633,137	-				-0.9
2,633,137	-				-1.3
2,633,185	-				-0.3
2,633,220	+				+1.0
2,633,220	+				-1.6
2,633,221	-				+1.0
2,633,221	-				-0.3
2,633,242	+				+0.9
2,633,242	+				-1.6
2,633,243	-				-0.6
2,633,243	-				-0.6
2,633,243	-				+2.3
2,633,246	+				+0.8
2,633,246	+				+0.1
2,633,246	+				-0.3
2,633,246	+				+1.2
2,633,246	+				-0.9
2,633,246	+				-0.9
2,633,246	+				-0.3
2,633,246	+				+0.3
2,633,246	+				-0.3
2,633,246	+				+1.2
2,633,246	+				-0.8
2,633,246	+				+0.5
2,633,246	+				-0.8
2,633,246	+				-0.8
2,633,246	+				+0.6
2,633,247	-				+0.1
2,633,247	-				-2.2
2,633,247	-				-2.1
2,633,247	-				-1.0
2,633,247	-				+0.4
2,633,247	-				+0.2
2,633,247	-				+0.1
2,633,247	-				-1.4
2,633,247	-				-2.5
2,633,247	-				+2.4
2,633,247	-				-0.9
2,633,247	-				+0.5
2,633,252	+				-0.5
2,633,252	+				-1.1
2,633,252	+				+0.8
2,633,253	-				+0.3
2,633,258	-				-0.1