Strain Fitness in Shewanella amazonensis SB2B around Sama_2174

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
2,628,973	-		Sama_2173	0.55	-0.3
2,628,973	-		Sama_2173	0.55	-1.8
2,629,004	+		Sama_2173	0.56	-1.0
2,629,004	+		Sama_2173	0.56	+0.2
2,629,023	+		Sama_2173	0.57	-2.2
2,629,024	-		Sama_2173	0.57	-3.1
2,629,025	+		Sama_2173	0.57	-1.6
2,629,527	-		Sama_2173	0.81	-1.3
2,629,527	-		Sama_2173	0.81	-2.6
2,629,563	-		Sama_2173	0.83	-1.1
2,629,762	+				-1.6
2,629,763	-				-2.6
2,629,763	-				-1.9
2,629,853	+				-3.2
2,629,854	-				-1.1
2,630,038	+				-3.1
2,630,038	+				-2.4
2,630,039	-				-2.1
2,630,062	-				-1.6
2,630,181	+		Sama_2174	0.16	-0.8
2,630,182	-		Sama_2174	0.16	-3.6
2,630,227	+		Sama_2174	0.19	+0.2
2,630,228	-		Sama_2174	0.19	-1.3
2,630,228	-		Sama_2174	0.19	-0.8
2,630,303	+		Sama_2174	0.24	-2.8
2,630,304	-		Sama_2174	0.24	-2.8
2,630,304	-		Sama_2174	0.24	-1.3
2,630,309	+		Sama_2174	0.24	-0.1
2,630,309	+		Sama_2174	0.24	-2.2
2,630,363	+		Sama_2174	0.28	-2.7
2,630,364	-		Sama_2174	0.28	-0.8
2,630,364	-		Sama_2174	0.28	-0.8
2,630,364	-		Sama_2174	0.28	-1.1
2,630,364	-		Sama_2174	0.28	-1.6
2,630,513	+		Sama_2174	0.37	-2.8
2,630,577	+		Sama_2174	0.41	-2.1
2,630,577	+		Sama_2174	0.41	-1.6
2,630,577	+		Sama_2174	0.41	-1.5
2,630,578	-		Sama_2174	0.41	-3.1
2,630,578	-		Sama_2174	0.41	-2.7
2,630,578	-		Sama_2174	0.41	-2.6
2,630,605	+		Sama_2174	0.42	-3.2
2,630,606	-		Sama_2174	0.43	-3.1
2,630,759	-		Sama_2174	0.52	-1.6
2,630,857	+		Sama_2174	0.58	-3.6
2,630,857	+		Sama_2174	0.58	-1.8
2,630,858	-		Sama_2174	0.58	-0.8
2,630,858	-		Sama_2174	0.58	-1.8
2,630,858	-		Sama_2174	0.58	-1.6
2,630,858	-		Sama_2174	0.58	-2.9
2,630,928	+		Sama_2174	0.62	-1.9
2,630,941	-		Sama_2174	0.63	-2.4
2,631,053	-		Sama_2174	0.70	-3.1
2,631,116	+		Sama_2174	0.74	-1.1
2,631,116	+		Sama_2174	0.74	-0.8
2,631,116	+		Sama_2174	0.74	+0.2
2,631,117	-		Sama_2174	0.74	-1.9
2,631,117	-		Sama_2174	0.74	-3.9
2,631,193	+		Sama_2174	0.79	-1.6
2,631,194	-		Sama_2174	0.79	-2.2
2,631,194	-		Sama_2174	0.79	-0.3
2,631,217	+		Sama_2174	0.80	-1.6
2,631,217	+		Sama_2174	0.80	-0.8
2,631,217	+		Sama_2174	0.80	-3.3
2,631,217	+		Sama_2174	0.80	-2.5
2,631,218	-		Sama_2174	0.80	-1.8
2,631,218	-		Sama_2174	0.80	-2.5
2,631,300	+		Sama_2174	0.85	-3.7
2,631,300	+		Sama_2174	0.85	-1.1
2,631,300	+		Sama_2174	0.85	-1.2
2,631,300	+		Sama_2174	0.85	-1.9
2,631,300	+		Sama_2174	0.85	-1.9
2,631,301	-		Sama_2174	0.85	-3.1
2,631,317	+		Sama_2174	0.86	+1.2
2,631,317	+		Sama_2174	0.86	-2.1
2,631,317	+		Sama_2174	0.86	-0.8
2,631,318	-		Sama_2174	0.86	-1.3
2,631,340	+		Sama_2174	0.88	-1.8
2,631,346	+		Sama_2174	0.88	-1.9
2,631,346	+		Sama_2174	0.88	-3.4
2,631,356	-		Sama_2174	0.89	+0.2
2,631,403	-				-1.8
2,631,444	+				-3.9
2,631,445	-				-4.0
2,631,445	-				-2.6
2,631,475	-				-1.3
2,631,578	-				+0.2
2,631,641	+				-0.8
2,631,689	+				-0.1
2,631,689	+				+1.3
2,631,690	-				-0.1
2,631,690	-				-0.7
2,631,697	+				-2.6
2,631,698	-				-0.7
2,631,811	-		Sama_2175	0.19	-1.0
2,631,823	-		Sama_2175	0.21	-2.2
2,631,823	-		Sama_2175	0.21	-1.3
2,631,942	-		Sama_2175	0.43	-1.6
2,632,000	+		Sama_2175	0.53	-0.8
2,632,000	+		Sama_2175	0.53	-1.2
2,632,000	+		Sama_2175	0.53	-2.2
2,632,001	-		Sama_2175	0.53	+0.2
2,632,001	-		Sama_2175	0.53	-0.2
2,632,028	-		Sama_2175	0.58	-0.8
2,632,028	-		Sama_2175	0.58	-0.2
2,632,035	-		Sama_2175	0.59	-0.3
2,632,059	+		Sama_2175	0.63	-1.9
2,632,060	-		Sama_2175	0.63	+0.8
2,632,060	-		Sama_2175	0.63	+0.4
2,632,115	-		Sama_2175	0.73	-0.6
2,632,115	-		Sama_2175	0.73	-2.8
2,632,216	+				+0.4
2,632,216	+				-0.2
2,632,217	-				-1.6
2,632,288	+				-0.3
2,632,288	+				-0.3
2,632,371	+		Sama_2176	0.16	+2.8
2,632,439	+		Sama_2176	0.26	-0.3
2,632,439	+		Sama_2176	0.26	-1.4